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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20080515C-005168

Length: 1,082

Sequence:  [FASTA format sequence]
GCACTCCAGG AGGACACGCG GGCAGCTGGG GCGTGGGATT CCTGCAGAGA CCTCGGTGGA
GGGTCAGAGG CCCGCGCCGA GCCCGTGTCC ACGGGGGTCG CTCCTCCTCC GCTGGAGGGA
CTGACTTACA ATTTGGGTCC AGAGCGCACA GCGCGGGGCT ACGAGGGTGC GCAGTTCCCC
GGGTCCCCCG AGTCCCCGAC GCCCGGCGAG GAGATCTGGG TTTTCCAGCG CGCCCCGCAA
GACGCCTCTG CTCAGGAGCC CGGCGCCGGG GCCCCGCGAT GGCCGCGGGC CGCAGCCTCA
GGGAGCTGCT GCCGCGTGGG TGCCGGGGCG CCCCTCCCTA GCGGGGCGCA GCCTGCGCCC
GGTCCCCGCC CGACCAGCGG AATGGGGGGC GGAGGGTCTG CCCTGAGGGT CTGCGCGGAC
CACCGCGGGG GCATCAACTG GCTCAGCCTG AGCCCCGACG GGCAGCGCCT GCTGACGGGC
AGCGAGGACG GCACCGCCCG GCTCTGGAGC ACCGCGGACG GCCAGTGCTG CGCCCTCCTG
CAAGGACATG AAAGCTACGT GACCTTCTGC CAGCTGGAGG ACGAAGCTGC CTTCACGTGC
AGCGCTGACT GCACCATCCG GAAGTGGGAC GTGCTGACCG GGCAGTGTCT GCAGGTGTTC
CGGGGACACA CATCCATTGT GAACAGGATC CTGGTCACCA ACAACCAGCT CTTCAGCAGT
TCCTATGACC GGACAGCTCG CGCCTGGAGT GTAGACAAAG GGCAGGTGTC GCGGGAGTTC
CGGGGCCACC GCAACTGTGT GCTGACTCTA GCCTACTCTG CCCCCTGGGA CCTGCCTGGG
GCTCCCTGCG TGGAGGAGGC CGTGGCTGGG GGGCTTCTGG TGACGGGAAG CACAGACGGC
ACAGCCAAGG TGTGGCAAGT GGCCAGTGGC TGCTGCCACC AGACGCTGCG GGGCCACACG
GGCGCCGTGC TCTGCCTGGT GTTGGACACA CCTGGGCACA CAGCCTTCAC CGGCAGCACC
GACGCCACCA TCCGCGCCTG GGACTTCTTG AGTGGGGAGC CGCTGCGCGT GGTTCGGGAG
CA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		WDR86	WD repeat domain 86	457	e-129	O
		WDR38	WD repeat domain 38	129	6e-30	O
		FBXW7	F-box and WD repeat domain containing 7 isoform 2	117	2e-26
		FBXW7	F-box and WD repeat domain containing 7 isoform 1	117	2e-26
		FBXW7	F-box and WD repeat domain containing 7 isoform 3	117	2e-26
		TAF5	TBP-associated factor 5	111	9e-25
		WDR69	WD repeat domain 69	104	1e-22	O
		PAFAH1B1	platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit	103	3e-22
		WDR5	WD repeat domain 5	101	1e-21	O
		WDR5	WD repeat domain 5	101	1e-21	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20080515C-005168 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVR01_0031_F06.b : aggcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0011_G02.b :                                                             


20080515C-005168 : .........................GCACTCCAGGAGGACACGCGGGCAGCTGGGGCGTG
                   ---------+---------+---------+---------+---------+---------+ 35
OVR01_0031_F06.b : xxxxxxxxxxxxxxxxxxxxxxxxxGCACTCCAGGAGGACACGCGGGCAGCTGGGGCGTG
OVR01_0011_G02.b :                                                             


20080515C-005168 : GGATTCCTGCAGAGACCTCGGTGGAGGGTCAGAGGCCCGCGCCGAGCCCGTGTCCACGGG
                   ---------+---------+---------+---------+---------+---------+ 95
OVR01_0031_F06.b : GGATTCCTGCAGAGACCTCGGTGGAGGGTCAGAGGCCCGCGCCGAGCCCGTGTCCACGGG
OVR01_0011_G02.b :    caaaaaattgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20080515C-005168 : GGTCGCTCCTCCTCCGCTGGAGGGACTGACTTACAATTTGGGTCCAGAGCGCACAGCGCG
                   ---------+---------+---------+---------+---------+---------+ 155
OVR01_0031_F06.b : GGTCGCTCCTCCTCCGCTGGAGGGACTGACTTACAATTTGGGTCCAGAGCGCACAGCGCG
OVR01_0011_G02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCACAGCGCG


20080515C-005168 : GGGCTACGAGGGTGCGCAGTTCCCCGGGTCCCCCGAGTCCCCGACGCCCGGCGAGGAGAT
                   ---------+---------+---------+---------+---------+---------+ 215
OVR01_0031_F06.b : GGGCTACGAGGGTGCGCAGTTCCCCGGGTCCCCCGAGTCCCCGACGCCCGGCGAGGAGAT
OVR01_0011_G02.b : GGGCTACGAGGGTGCGCAGTTCCCCGGGTCCCCCGAGTCCCCGACGCCCGGCGAGGAGAT


20080515C-005168 : CTGGGTTTTCCAGCGCGCCCCGCAAGACGCCTCTGCTCAGGAGCCCGGCGCCGGGGCCCC
                   ---------+---------+---------+---------+---------+---------+ 275
OVR01_0031_F06.b : CTGGGTTTTCCAGCGCGCCCCGCAAGACGCCTCTGCTCAGGAgcccggcgccggggcccc
OVR01_0011_G02.b : CTGGGTTTTCCAGCGCGCCCCGCAAGACGCCTCTGCTCAGGAgcccggcgccggggcccc


20080515C-005168 : GCGATGGCCGCGGGCCGCAGCCTCAGGGAGCTGCTGCCGCGTGGGTGCCGGGGCGCCCCT
                   ---------+---------+---------+---------+---------+---------+ 335
OVR01_0031_F06.b : gcgatggccgcgggccgcAGCCTCAGGGAGCTGCTGCCGCGTGGGTGCCGGGGCGCCCCT
OVR01_0011_G02.b : gcgatggccgcgggccgcAGCCTCAGGGAGCTGCTGCCGCGTGGGTGCCGGGGCGCCCCT


20080515C-005168 : CCCTAGCGGGGCGCAGCCTGCGCCCGGTCCCCGCCCGACCAGCGGAATGGGGGGCGGAGG
                   ---------+---------+---------+---------+---------+---------+ 395
OVR01_0031_F06.b : CCCTAGCGGGGCGCAGCCTGCGCCCGGTCCCCGCCCGACCAGCGGAATGGGGGGCGGAGG
OVR01_0011_G02.b : CCCTAGCGGGGCGCAGCCTGCGCCCGGTCCCCGCCCGACCAGCGGAATGGGGGGCGGAGG


20080515C-005168 : GTCTGCCCTGAGGGTCTGCGCGGACCACCGCGGGGGCATCAACTGGCTCAGCCTGAGCCC
                   ---------+---------+---------+---------+---------+---------+ 455
OVR01_0031_F06.b : GTCTGCCCTGAGGGTCTGCGCGGACCACCGCGGGGGCATCAACTGGCTCAGCCTGAGCCC
OVR01_0011_G02.b : GTCTGCCCTGAGGGTCTGCGCGGACCACCGCGGGGGCATCAACTGGCTCAGCCTGAGCCC


20080515C-005168 : CGACGGGCAGCGCCTGCTGACGGGCAGCGAGGACGGCACCGCCCGGCTCTGGAGCACCGC
                   ---------+---------+---------+---------+---------+---------+ 515
OVR01_0031_F06.b : CGACGGGCAGCGCCTGCTGACGGGCAGCGAGGACGGCACCGCCCGGCTCTGGAGCACCGC
OVR01_0011_G02.b : CGACGGGCAGCGCCTGCTGACGGGCAGCGAGGACGGCACCGCCCGGCTCTGGAGCACCGC


20080515C-005168 : GGACGGCCAGTGCTGCGCCCTCCTGCAAGGACATGAAAGCTACGTGACCTTCTGCCAGCT
                   ---------+---------+---------+---------+---------+---------+ 575
OVR01_0031_F06.b : GGACGGCCAGTGCTGCGCCCTCCTGCAAGGACATGAAAGCTACGTGACCTTCTGCCAGCT
OVR01_0011_G02.b : GGACGGCCAGTGCTGCGCCCTCCTGCAAGGACATGAAAGCTACGTGACCTTCTGCCAGCT


20080515C-005168 : GGAGGACGAAGCTGCCTTCACGTGCAGCGCTGACTGCACCATCCGGAAGTGGGACGTGCT
                   ---------+---------+---------+---------+---------+---------+ 635
OVR01_0031_F06.b : GGAGGACGAAGCTGCCTTCACGTGCAGCGCTGACTGCACCATCCGGAAGTGGGACGTGCT
OVR01_0011_G02.b : GGAGGACGAAGCTGCCTTCACGTGCAGCGCTGACTGCACCATCCGGAAGTGGGACGTGCT


20080515C-005168 : GACCGGGCAGTGTCTGCAGGTGTTCCGGGGACACACATCCATTGTGAACAGGATCCTGGT
                   ---------+---------+---------+---------+---------+---------+ 695
OVR01_0031_F06.b : GACCGGGCAGTGTCTGCAGGTGTTCCGGGGACACACATCCATTGTGAACAGGATCCTGGT
OVR01_0011_G02.b : GACCGGGCAGTGTCTGCAGGTGTTCCGGGGACACACATCCATTGTGAACAGGATCCTGGT


20080515C-005168 : CACCAACAACCAGCTCTTCAGCAGTTCCTATGACCGGACAGCTCGCGCCTGGAGTGTAGA
                   ---------+---------+---------+---------+---------+---------+ 755
OVR01_0031_F06.b : CACCAACAACCAGCTCTTCAGCAGTTCCTATGACCGGACAGCTCGCGCCTGGAGTGTAGA
OVR01_0011_G02.b : CACCAACAACCAGCTCTTCAGCAGTTCCTATGACCGGACAGCTCGCGCCTGGAGTGTAGA


20080515C-005168 : CAAAGGGCAGGTGTCGCGGGAGTTCCGGGGCCACCGCAACTGTGTGCTGACTCTAGCCTA
                   ---------+---------+---------+---------+---------+---------+ 815
OVR01_0031_F06.b : CAAAGGGCAGGTGTCGCGGGAGTTCCGGGGCCACCGCAACTGTGTGCTGACTCTAGCCTA
OVR01_0011_G02.b : CAAAGGGCAGGTGTCGCGGGAGTTCCGGGGCCACCGCAACTGTGTGCTGACTCTAGCCTA


20080515C-005168 : CTCTGCCCCCTG*GGACCTGCCTGGGGCTCCCTGCGTGG*AGGAGGCCGTGGCTGGGGGG
                   ---------+---------+---------+---------+---------+---------+ 873
OVR01_0031_F06.b : CTCTGCCCCCTGGGGACCTGCCTGGGGGTCCCTGCGTGGAAGAAGGCCGGGGCTGGGGGG
OVR01_0011_G02.b : CTCTGCCCCCTG*GGACCTGCCTGGGGCTCCCTGCGTGG*AGGAGGCCGTGGCTGGGGGG


20080515C-005168 : CTTCTGGTGACGGGAAGCACAGACGGCACAGCCAAGGTGTGGCAAGTGGCCAGTGGCTGC
                   ---------+---------+---------+---------+---------+---------+ 933
OVR01_0031_F06.b : Ctttctggtgacggggaagcacagacgggacaaccaaggggtgggcaggtgggcagtggg
OVR01_0011_G02.b : CTTCTGGTGACGGGAAGCACAGACGGCACAGCCAAGGTGTGGCAAGTGGCCAGTGGCTGC


20080515C-005168 : TGCCACCAGACGCTGCGGGGCCACACGGGCGCCGTGCTCTGCCTGGTGTTGGACACACCT
                   ---------+---------+---------+---------+---------+---------+ 993
OVR01_0031_F06.b : ctggtgccaccagacgcttgcgggggccacccgggcgcccgggttttgcctggggtttgg
OVR01_0011_G02.b : TGCCACCAGACGCTGCGGGGCCACACGGGCGCCGTGCTCTGCCTGGTGTTGGACACACCT


20080515C-005168 : GGGCACACAGCCTTCACCGGCAGCACCGACGCCACCATCCGCGCCTGGGACTTCTTGAGT
                   ---------+---------+---------+---------+---------+---------+ 1053
OVR01_0031_F06.b : acaaaccttgggcccccaaccctttcccgggcagaaccgaaagcccccctttcccccgcc
OVR01_0011_G02.b : GGGCACACAGCCTTCACCGGCAGCACCGACGCCACCATCCGCGCCTGGGACTTCTTGAGT


20080515C-005168 : GGGGAGCCGCTGCGCGTGGTTCGGGAGCA...............................
                   ---------+---------+---------+---------+---------+---------+ 1082
OVR01_0031_F06.b : ctgggaacatccctgagagggggaagccccttggcccggggttttcgggggaagcccccc
OVR01_0011_G02.b : GGGGAGCCGCTGCGCGTGGTTCGGGAGCAccaggcttcatcatctgtcttggagctggtg


20080515C-005168 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1082
OVR01_0031_F06.b : aggggcttctccctttatttttttttttcgggaagttggttggagaaaccccggggcccc
OVR01_0011_G02.b : acccggaacgtgtactcgggcaacgccgaacgggacggtcaaagtgctgggttggcggga


20080515C-005168 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1082
OVR01_0031_F06.b : ggggggtactcttttgtggggggccaaggcccccccccccaaaaaag            
OVR01_0011_G02.b : ccggggcgaagggcgtggcgccacgtttcccccgccccccaaaaccccggggggaagccc


20080515C-005168 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1082
OVR01_0031_F06.b :                                                             
OVR01_0011_G02.b : ccccttaaagatacccccccgcggggggccc