[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20080515C-005762
Length:
957
Sequence:
[FASTA format sequence]
CTCGCCGTGC CACCTCTCCC TTCCGACACT CTCAGCCCCC CACCCCGCCC CTTCCCAAGC
GTGTCCCGGG CCGCCGCCGC AGAAACCGCA CCATCGCTAC CCCCACATCC TCCACGCGGG
ACACGCAGCC GTGCCTACAA GTGTTCTTAG AGCAGAGATG AATAATACTG CAGCCAGCCC
AATGTCTACT GCCACTTCAA GTAGTGGAAG AAGTACAGGG AAGTCTATAA GCTTTGCAGC
AGAATTGCAG AGTATGATGT TTTCTTTAGG TGATGCCAGG AGGCCTCTTC ATGAAACAGC
AGTTTTGGTA GAAGATGTAG TACACACACA GTTAATTAAT CTGTTACAGC AAGCTGCTGA
AGTTTCTCAG CTTCGGGGAG CAAGAGTAAT CTCTGCTGAA GATCTTCTGT TTTTGATGCG
CAAAGATAAG AAAAAACTTA GAAGACTGCT GAAATACATG TTTTTCCGAG ACTACAAATC
AAAGATCGTC AAAGGCATCG ATGAGGATGA TCTTCTGGAA GACAAAATGA GTGGCAGCAA
TAACGCGAAC AAAAGACAAA AAATCGCTCA AGACTTTCTC AACTCTATTG ACCAAACAGG
AGAACTCTTG GCGATGTTTG AAGAGGATGA AATTGATGAA GTTAAACAAG AAAGGATGGA
GAGAGCAGAA AGACAAACTC GAATTATGGA TTCAGCTCAA TATGCAGAAT TTTGTGAAAG
CCGACAATTA AGTTTCTCCA AAAAAGCCTC TAAATTTCGA GACTGGTTGG ACTGCAGCAG
TATGGAGATA AAACCCAATG TTGTCACCAT GGAAATTTTA GCATATTTGG CATATGAAAC
TGTGGCACAG CTGGTGGATC TGGCTCTTCT TGTGAGGCAG GACATGGTAA CCAAGGCGGG
GGGACCCCTT CAGCCATGCC ATTTCTGCAA CCCTTTATTC AGTATCACAG CTCTGCT
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | SUPT3H | suppressor of Ty 3 homolog isoform 1 | 371 | e-104 | O |
|
| SUPT3H | suppressor of Ty 3 homolog isoform 2 | 353 | 4e-99 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20080515C-005762 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVR01_0063_F02.b : nnnggcattggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TES01_0077_B01.b :
OVRM1_0147_F06.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0019_H08.b : gggggggaacctattagxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20080515C-005762 : .....................CTCGCCGTGCCACCTCTCCCTTCCGACACTCTCAGCCCC
---------+---------+---------+---------+---------+---------+ 39
OVR01_0063_F02.b : xxxxxxxxxxxxxxxxxxxxxCTCGCCGTGCCACCTCTCCCTTCCGACACTCTCAGCCCC
TES01_0077_B01.b :
OVRM1_0147_F06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxgtgccacctctcccttccgacactctcagcccc
OVR01_0019_H08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxgtgaagcccctgctgcaggtgacgaggcagg
20080515C-005762 : CCACCCCGCCCCTTCCCAAGCGTGTCCCGGGCCGCCGCCGCAGAAACCGCACCATCGCTA
---------+---------+---------+---------+---------+---------+ 99
OVR01_0063_F02.b : CCACCCCGCCCCTTCCCAAGCGTGTCCCGGGCCGCCGCCGCAGAAACCGCACCATCGCTA
TES01_0077_B01.b : cgcggtggcccttccagcgtgtcccgggccgccgccgcagaaaccgcaccatcgcta
OVRM1_0147_F06.b : ccaccccgccccttcccaagcgtgtcccgggccgccgccgcagaaaccgcaccatcgcta
OVR01_0019_H08.b : aggaggagatgcaggccaaggaggatgagctgcagaagaccaaggagcggcagcagaagg
20080515C-005762 : CCCCCACATCCTCCACGCGGGACACGCAGCCGTGCCTACAAGTGTTCTTAGAGCAGAGAT
---------+---------+---------+---------+---------+---------+ 159
OVR01_0063_F02.b : CCCCCACATCCTCCACGCGGGACACGCAGCCGTGCCTACAAGTGTTCTTAGAGCAGAGAT
TES01_0077_B01.b : cccccacatcctccacgcgggacacGCAGCCGTGCCTACAAGTGTTCTTAGAGCAGAGAT
OVRM1_0147_F06.b : cccccacatcctccacgcgggacacGCAGCCGTGCCTACAAGTGTTCTTAGAGCAGAGAT
OVR01_0019_H08.b : cagagaatgaactcaaggagctggaGCAGCCGTGCCTACAAGTGTTCTTAGAGCAGAGAT
20080515C-005762 : GAATAATACTGCAGCCAGCCCAATGTCTACTGCCACTTCAAGTAGTGGAAGAAGTACAGG
---------+---------+---------+---------+---------+---------+ 219
OVR01_0063_F02.b : GAATAATACTGCAGCCAGCCCAATGTCTACTGCCACTTCAAGTAGTGGAAGAAGTACAGG
TES01_0077_B01.b : GAATAATACTGCAGCCAGCCCAATGTCTACTGCCACTTCAAGTAGTGGAAGAAGTACAGG
OVRM1_0147_F06.b : GAATAATACTGCAGCCAGCCCAATGTCTACTGCCACTTCAAGTAGTGGAAGAAGTACAGG
OVR01_0019_H08.b : GAATAATACTGCAGCCAGCCCAATGTCTACTGCCACTTCAAGTAGTGGAAGAAGTACAGG
20080515C-005762 : GAAGTCTATAAGCTTTGCAGCAGAATTGCAGAGTATGATGTTTTCTTTAGGTGATGCCAG
---------+---------+---------+---------+---------+---------+ 279
OVR01_0063_F02.b : GAAGTCTATAAGCTTTGCAGCAGAATTGCAGAGTATGATGTTTTCTTTAGGTGATGCCAG
TES01_0077_B01.b : GAAGTCTATAAGCTTTGCAGCAGAATTGCAGAGTATGATGTTTTCTTTAGGTGATGCCAG
OVRM1_0147_F06.b : GAAGTCTATAAGCTTTGCAGCAGAATTGCAGAGTATGATGTTTTCTTTAGGTGATGCCAG
OVR01_0019_H08.b : GAAGTCTATAAGCTTTGCAGCAGAATTGCAGAGTATGATGTTTTCTTTAGGTGATGCCAG
20080515C-005762 : GAGGCCTCTTCATGAAACAGCAGTTTTGGTAGAAGATGTAGTACACACACAGTTAATTAA
---------+---------+---------+---------+---------+---------+ 339
OVR01_0063_F02.b : GAGGCCTCTTCATGAAACAGCAGTTTTGGTAGAAGATGTAGTACACACACAGTTAATTAA
TES01_0077_B01.b : GAGGCCTCTTCATGAAACAGCAGTTTTGGTAGAAGATGTAGTACACACACAGTTAATTAA
OVRM1_0147_F06.b : GAGGCCTCTTCATGAAACAGCAGTTTTGGTAGAAGATGTAGTACACACACAGTTAATTAA
OVR01_0019_H08.b : GAGGCCTCTTCATGAAACAGCAGTTTTGGTAGAAGATGTAGTACACACACAGTTAATTAA
20080515C-005762 : TCTGTTACAGCAAGCTGCTGAAGTTTCTCAGCTTCGGGGAGCAAGAGTAATCTCTGCTGA
---------+---------+---------+---------+---------+---------+ 399
OVR01_0063_F02.b : TCTGTTACAGCAAGTTGCTGAAGTTTCTCAGCTTCGGGGAGCAAGAGTAATCTCTGCTGA
TES01_0077_B01.b : TCTGTTACAGCAAGCTGCTGAAGTTTCTCAGCTTCGGGGAGCAAGAGTAATCTCTGCTGA
OVRM1_0147_F06.b : TCTGTTACAGCAAGCTGCTGAAGTTTCTCAGCTTCGGGGAGCAAGAGTAATCTCTGCTGA
OVR01_0019_H08.b : TCTGTTACAGCAAGCTGCTGAAGTTTCTCAGCTTCGGGGAGCAAGAGTAATCTCTGCTGA
20080515C-005762 : AGATCTTCTGTTTTTGATGCGCAAAGATAAGA*AAAAACTTAGAAGACTGCTGAAATACA
---------+---------+---------+---------+---------+---------+ 458
OVR01_0063_F02.b : AGATCTTCTGTTTTTGATGCGCAAAGATAAGA*AAAAACTTAGAAGACTGCTGAAATACA
TES01_0077_B01.b : AGATCTTCTGTTTTTGATGCGCAAAGATAAGA*AAAAACTTAGAAGACTGCTGAAATACA
OVRM1_0147_F06.b : AGATCTTCTGTTTTTGATGCGCAAAGATAAGAAAAAAACTTAGAAGACTGCTGAAATACA
OVR01_0019_H08.b : AGATCTTCTGTTTTTGATGCGCAAAGATAAGA*AAAAACTTAGAAGACTGCTGAAATACA
20080515C-005762 : TGTTTTTCCGAGACTACAAATCAAAGATCGTCAAAGGCATCGATGAGGATGATCTTCTGG
---------+---------+---------+---------+---------+---------+ 518
OVR01_0063_F02.b : TGTTTTTCCGAGACTACAAATCAAAGATCGTCAAAGGCATCGATGAGGATGATCTTCTGG
TES01_0077_B01.b : TGTTTTTCCGAGACTACAAATCAAAGATCGTCAAAGGCATCGATGAGGATGATCTTCTGG
OVRM1_0147_F06.b : TGTTTTTCCGAGACTACAAATCAAAGATCGTCAAAGGCATCGATGAGGATGATCTTCTGG
OVR01_0019_H08.b : TGTTTTTCCGAGACTACAAATCAAAGATCGTCAAAGGCATCGATGAGGATGATCTTCTGG
20080515C-005762 : AAGACAAAATGAGTGGCAGCAATAACGCGAACAAAAGACAAAAAA*TCGCTCAAGACTTT
---------+---------+---------+---------+---------+---------+ 577
OVR01_0063_F02.b : AAGACAAAATGAGTGGCAGCAATAACGCGAACAAAAGACAAAAAA*TCGCTCAAGACTTT
TES01_0077_B01.b : AAGACAAAATGAGTGGCAGCAATAACGCGAACAAAAGACAAAAAAATCGCTCAAGACTTT
OVRM1_0147_F06.b : AAGACAAAATGAGTGGCAGCAATAACGCGAACAAAAGACAAAAAA*TCGCTCAAGACTTT
OVR01_0019_H08.b : AAGACAAAATGAGTGGCAGCAATAACGCGAACAAAAGACAAAAAA*TCGCTCAAGACTTT
20080515C-005762 : CTCAACTCTATT*GACCAAACAGGAGAACTCTTGGCGATGTTTGAAGAGGATGAAATTGA
---------+---------+---------+---------+---------+---------+ 636
OVR01_0063_F02.b : CTCAACTCTATT*GACCAAACAGGAGAACTCTTGGCGATGTTTGAAGAGGATGAAATTGA
TES01_0077_B01.b : CTCAACTCTATTTGACCAAACAGGAGAACTCTTGGCGATGTTTGAAGAGGATGAAATTGA
OVRM1_0147_F06.b : CTCAACTCTATT*GACCAAACAGGAGAACTCTTGGCGATGTTTGAAGAGGATGAAATTGA
OVR01_0019_H08.b : CTCAACTCTATT*GACCAAACAGGAGAACTCTTGGCGATGTTTGAAGAGGATGAAATTGA
20080515C-005762 : TGAAGTTAAACAAGAAAGGATGGAGAGAGCAGAAAGACAAACTCGAATTATGGATTCAGC
---------+---------+---------+---------+---------+---------+ 696
OVR01_0063_F02.b : TGAAGTTAAACAAGAAAGGATGGAGAGAGCAGAAAGACAAACTCGAATTATGGATTCAGC
TES01_0077_B01.b : TGAAGTTAA*CAAGAAAGGATGGAGGGAGCAGATAGACAAACTCGAAATATGGATTCAGC
OVRM1_0147_F06.b : TGAAGTTAAACAAGAAAGGATGGAGAGAGCAGAAAGACNAACTCGAATTATGGATTCAGC
OVR01_0019_H08.b : TGAAGTTAAACAAGAAAGGATGGAGAGAGCAGAAAGACAAACTCGAATTATGGATTCAGC
20080515C-005762 : TCAATATGCAGAATTTTGTGAAAGCCGACAATTAAGTTTCTCCAAAAAAGCCTCTAAATT
---------+---------+---------+---------+---------+---------+ 756
OVR01_0063_F02.b : TCAATATGCAGAATTTTGTGAAAGCCGACAATTAAGTTTCTCCAAAAAAGCCTCTAAATT
TES01_0077_B01.b : TCAATATGCAGAATTTTGTGAAAGCCGACAATTAAATTTCTCCAAAAAAGCCTCTTAATT
OVRM1_0147_F06.b : TCAATATGCAGAATTTTGTGAAAGCCGACAATTAAg
OVR01_0019_H08.b : TCAATATGCAGAATTTTGTGAAAGCCGACAATTAAGTTTCTCCAAAAAAGCCTCTAAATT
20080515C-005762 : TCGA*GACTGGTTGGACTGCAGCAGTATGGAGATAAAACCCAATGTTGTCACCATGGAAA
---------+---------+---------+---------+---------+---------+ 815
OVR01_0063_F02.b : TCGA*GACTGGTTGGACTGCAGCAGTATGGAGATAAAACCCAATGTTGTCACCATGGAAA
TES01_0077_B01.b : TCCAAAACTGGTTGGACTGCAGCATTATGGAAATAAAACCcaatgttgtcacctgggaaa
OVRM1_0147_F06.b :
OVR01_0019_H08.b : TCGA*GACTGGTTGGACTGCAGCAGTATGGAGATAAAACCCAATGTTGTCACCATGGAAA
20080515C-005762 : TTTTAGCATATTTGGCATATGAAACTGTGGCACAGCTGGT*GGATCTGGCTCTTCTTGTG
---------+---------+---------+---------+---------+---------+ 874
OVR01_0063_F02.b : TTTTAGCATATTTGGCATATGAAACTGTGGCACACCTGGTTGGATCTGGCTCTTCTGGTG
TES01_0077_B01.b : ttttagcatatttgggatatgaaactgtggcaacacctgggggaaactggctcctcttgg
OVRM1_0147_F06.b :
OVR01_0019_H08.b : TTTTAGCATATTTGGCATATGAAACTGTGGCACAGCTGGT*GGATCTGGCTCTTCTTGTG
20080515C-005762 : AGGCAGGACATGGTAACCAAGGCGGGGGGAC*CCCTTCAGCCA*TGCCATTTCTGCAACC
---------+---------+---------+---------+---------+---------+ 932
OVR01_0063_F02.b : AGGCCAGACATGGTTACCAAGGGCGGGGGACCCCCTTCAGCCAGTGCCATTTCTGGCACC
TES01_0077_B01.b : gggggctgaacatggtataccagggcggggggaaccccttaaaccttgccattttttgca
OVRM1_0147_F06.b :
OVR01_0019_H08.b : AGGCAGGACATGGTAACCAAGGCGGGGGGAC*CCCTTCAGCCA*TGCCATTTCTGCAACC
20080515C-005762 : CTTTATTCAGTATCACAGCTCTGCT...................................
---------+---------+---------+---------+---------+---------+ 957
OVR01_0063_F02.b : CTTTATTCcagaatcccagcctcttgcttaaaggggccttggcatgaaagtccttacccc
TES01_0077_B01.b : accctttattccaatttccaaacctctgctcaaggggtctgtggatgaaatcccatcccc
OVRM1_0147_F06.b :
OVR01_0019_H08.b : CTTTATTCAGTATCACAGCTCTGCTgaaggggtctggcatgaagtcctacccagactctc
20080515C-005762 : ............................................................
---------+---------+---------+---------+---------+---------+ 957
OVR01_0063_F02.b : agaactctccctgaaaaaacacaccttccccccttaaacccaaaaggcttccattaatct
TES01_0077_B01.b : aaacccccctggaaaaatacacttccctcgtaacacaaaggtttcctatatttgggatct
OVRM1_0147_F06.b :
OVR01_0019_H08.b : ctgaaaaccccacctccccctaccccaacagctccatcatctgggatcccagcactcagg
20080515C-005762 : ............................................................
---------+---------+---------+---------+---------+---------+ 957
OVR01_0063_F02.b : ggggattccacagcccttcccggggaaaacctccaatt
TES01_0077_B01.b : aagcccttccggggaaaaccccctttgggcccctttggggatggggagttgtgtgcaaaa
OVRM1_0147_F06.b :
OVR01_0019_H08.b : ggaaaaccaccatcagggaccccttaagggaaatggggaatgggctgggaacaaaaaccc
20080515C-005762 : ............................................................
---------+---------+---------+---------+---------+---------+ 957
OVR01_0063_F02.b :
TES01_0077_B01.b : aatccctcccatacctcaccatggtgaaataatataaaaacccccccgccctggggtgtt
OVRM1_0147_F06.b :
OVR01_0019_H08.b : ccccttaaaaacccaaaaccaaagggaaaaaaaaaaaaaaaaaaaaaccccccccccggg
20080515C-005762 : ............................................................
---------+---------+---------+---------+---------+---------+ 957
OVR01_0063_F02.b :
TES01_0077_B01.b : tagagtctccaatgaaatctttccccccctgtgcctaactaaataagagcccttctaaac
OVRM1_0147_F06.b :
OVR01_0019_H08.b : ggcccctgggggggggggggttttgaagggggcccctcaccccaaggccgaaaagtgtgc
20080515C-005762 : ............................................................
---------+---------+---------+---------+---------+---------+ 957
OVR01_0063_F02.b :
TES01_0077_B01.b : tttttgacctaaaaatgggccccctctccccttttaatataggcgcaccgccgggagagg
OVRM1_0147_F06.b :
OVR01_0019_H08.b : cc
20080515C-005762 : ............................................................
---------+---------+---------+---------+---------+---------+ 957
OVR01_0063_F02.b :
TES01_0077_B01.b : gggtatttattttctggccccgcaatataaaaattggctgccaactattagaaatagcgt
OVRM1_0147_F06.b :
OVR01_0019_H08.b :
20080515C-005762 : ............................................................
---------+---------+---------+---------+---------+---------+ 957
OVR01_0063_F02.b :
TES01_0077_B01.b : ttatataaaaggattttcctttctctcctcc
OVRM1_0147_F06.b :
OVR01_0019_H08.b :
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