[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20080515C-006250
Length:
908
Sequence:
[FASTA format sequence]
CTCACTGCTC TTCTGCTCCC TGAAACTCAG CTGCCAGGGG AGCCGGGGCT GCCCTACGAA
GCCGTCCCCT CCATACTGGA CCCCTACAGG GAGCCACGTG TGCCCAGCGG GGGCACCGCC
CCAGCTGATG CCCCAGAGGG GCCACCCATC TCAAGAGGGG CTCCGGGTCC TGCCTGGCCT
CCTCATGGCA CATGAGCCAG AGCCTGAGGC TGATGGGTTA CTGGACCTCA GCTTCCTGAC
GGAGGAGGAA CAGGAAGCCA TTGCTGAGGT CCTGAAGCGA GATGCCCACC TACGGCAGCT
GGAGGAGGGA CGGGTCAGAA AGCTCCGGGC ATCACTGGAA GACCCTGGGC AGCTGAAGAT
CCTAACAGGG GACTGGTTCC AGGAAGCACG CTCCCAGAGG CACCACCACA CCCACCTGGG
TTCTGACCTA GTCCGAGCCT CCATCCGCAG AAAGAAGGGC TCCAGGGGAG ACCAGGCTCG
GGGCAGCAAT GGGGAGGCTG AGGCTGCTGG GAAAGAGACC GAAGAGGCGC TGGAGCCCAG
GCTCCCCATA GACAAGGCCC CCCAAGAGAG TCTCAGCGAG GCTGAGGGAC CTGATTTCCC
CTCACCATAT GTCCCCACTA AGGCATCAGA TAATGAAGAG GAGCCCCCGG CCCAGGAAGC
GCCTGGGCCG GCGGACGTTC AGGTCCCAGC CGCGGAGGAG GCGGACCCGG AGCCAAAGCC
GCCGTCGGGG GCGGAGGAGG AGCCGCAGCC CAGGCCTGCT CAGACCCAGG AGGCGTCCGA
AATCCTGGAG AATGGGGAGG AGGCCCCGGG GCCTGACCCC TCACTGGACC GTATGCTCAG
CACCAGCTCC TCCATGGTCA GCCTCAACTC CTCCACGCTG AGCGGCAGCC AGATGAGACC
TGTCGGGG
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | SYTL1 | synaptotagmin-like 1 | 263 | 1e-70 | O |
|
| SYTL2 | synaptotagmin-like 2 isoform a | 90.1 | 2e-18 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20080515C-006250 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVR01_0048_B04.b : ggggttttttttagcattggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0039_H04.b : gagttgtcxxxxxxxxxxxxxxxxx
SMG01_0063_B05.b : nttcttaatnnnnggctatagcagcggta
SMG01_0042_A03.b : nnnggcctgtaaaag
20080515C-006250 : .................................CTCACTGCTCTTCTGCTCCCTGAAACT
---------+---------+---------+---------+---------+---------+ 27
LVR01_0048_B04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCACTGCTCTTCTGCTCCCTGAAACT
LVRM1_0039_H04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGCTCTTCTGCTCCCTGAAACT
SMG01_0063_B05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGCTCTTCTGCCCCCTGAAACT
SMG01_0042_A03.b : cagataaacaggcgtgtacggtxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtttcct
20080515C-006250 : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
---------+---------+---------+---------+---------+---------+ 87
LVR01_0048_B04.b : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
LVRM1_0039_H04.b : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
SMG01_0063_B05.b : CAGCTGCCAGGGGAGCTGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
SMG01_0042_A03.b : tccgtcataaaagggtacctggtctgctttgcagcacttggccccctctgaggagacccC
20080515C-006250 : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
---------+---------+---------+---------+---------+---------+ 147
LVR01_0048_B04.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
LVRM1_0039_H04.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
SMG01_0063_B05.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
SMG01_0042_A03.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
20080515C-006250 : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
---------+---------+---------+---------+---------+---------+ 207
LVR01_0048_B04.b : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
LVRM1_0039_H04.b : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
SMG01_0063_B05.b : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
SMG01_0042_A03.b : CTCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
20080515C-006250 : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
---------+---------+---------+---------+---------+---------+ 267
LVR01_0048_B04.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
LVRM1_0039_H04.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
SMG01_0063_B05.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
SMG01_0042_A03.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
20080515C-006250 : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
---------+---------+---------+---------+---------+---------+ 327
LVR01_0048_B04.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
LVRM1_0039_H04.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
SMG01_0063_B05.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
SMG01_0042_A03.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAAGAGGGACGGGTCAGAAAGCTCCG
20080515C-006250 : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
---------+---------+---------+---------+---------+---------+ 387
LVR01_0048_B04.b : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
LVRM1_0039_H04.b : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
SMG01_0063_B05.b : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
SMG01_0042_A03.b : GGCATCACTGGAAGACCCTGGGCAGCTGAATATCCTAACAGGGGACTGGTTCCAGGAAGC
20080515C-006250 : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
---------+---------+---------+---------+---------+---------+ 447
LVR01_0048_B04.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
LVRM1_0039_H04.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
SMG01_0063_B05.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
SMG01_0042_A03.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
20080515C-006250 : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
---------+---------+---------+---------+---------+---------+ 507
LVR01_0048_B04.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
LVRM1_0039_H04.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
SMG01_0063_B05.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
SMG01_0042_A03.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
20080515C-006250 : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
---------+---------+---------+---------+---------+---------+ 567
LVR01_0048_B04.b : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
LVRM1_0039_H04.b : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
SMG01_0063_B05.b : TGGGAAAGAGACCGAAGAGGTGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
SMG01_0042_A03.b : TGGGAAAGAGACCGAAGAGGTGCTGGAGCCCAGGCTCCACATAGACAAGGCCCCCCAAGA
20080515C-006250 : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
---------+---------+---------+---------+---------+---------+ 627
LVR01_0048_B04.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
LVRM1_0039_H04.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
SMG01_0063_B05.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
SMG01_0042_A03.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
20080515C-006250 : AGATAATGAAGAGGAGCCCCCGGCCCAGGAAGCGCCTGGGCCGGCGGACGTTCAGGTCCC
---------+---------+---------+---------+---------+---------+ 687
LVR01_0048_B04.b : AGATAATGAAGAGGAGCCCCCGGCCCAGGAAGCGCCTGGGCCGGCGGACGTTCAGGTCCC
LVRM1_0039_H04.b : AGATAATGAAGAGGAGCCCCCGGCCCAGGAAGCGCCTGGGCCGGCGGACGTTCCAGTCCC
SMG01_0063_B05.b : AGATAATGAAGAGGAGCCCCCGGCCCAGGAAGCGCCTGGGCCGGCGGACGTTCAGGTCCC
SMG01_0042_A03.b : AGATAATGAAGAAGAGCCCCCGGCCCAAGAAGCGCCTGGGGCCGCGGACGTTCAGGTCCC
20080515C-006250 : AGCCGCGGAGGAGGCGGACCCGGAGCCAAAGCCGCCGTCGGGGGCGGAGGAGGAGCCGCA
---------+---------+---------+---------+---------+---------+ 747
LVR01_0048_B04.b : AGCCGCGGAGGAGGCGGACCCGGAGCCAAAGCCGCCGTCGGGGGCGGAGGAGGAGCCGCA
LVRM1_0039_H04.b : AGCCGCGGAGGAGGCGGACCCGGAGCC*AAGCCGCCGTCGGGGGCGGAG
SMG01_0063_B05.b : AGCCGCGGAGGAGGCGGACCCGGAGCCTAAGCCGCCGTCGGGGGCGGAGGAGGAGCCGCA
SMG01_0042_A03.b : AGCCGCGGAGGAGGCGGACCCGGAcctaaccccccctcgggggcgaagaagaccccaacc
20080515C-006250 : GCCCAGGCCTGCTCAGACCCAGGAGGCGTCCGAAATCCTGGAGAATGGGGAGGAGGCCCC
---------+---------+---------+---------+---------+---------+ 807
LVR01_0048_B04.b : ACCCAGGCCTGCTCAGACCCAGGAGGCGTCCGAAATCCTGGAGAATGGGGAGGAGGCCCC
LVRM1_0039_H04.b :
SMG01_0063_B05.b : GCCCAGGCCTGCTCAGACCCAGGAAGCGTCCGAGATCCTGGAGAATGGGGAGGAAGCCCC
SMG01_0042_A03.b : caagcctgctcaaacccgagaagcgtcgaaattctgaaaatggggaggaagccccggggc
20080515C-006250 : GGGGCCTGACCCCTCACTGGACCGTATGCTCAGCACCAGCTCCTCCATGGTCAGCCTCAA
---------+---------+---------+---------+---------+---------+ 867
LVR01_0048_B04.b : GGGGCCTGACCCCTCACTGGACCGTATGCTCAGCACCAGCTCCTCAATGGTCAGCCTCAA
LVRM1_0039_H04.b :
SMG01_0063_B05.b : GGGGCCNGACCCCTCACTGGACCGTATGCTCAGCAGCAGCTCCTCCATGGTCAGCCTCAA
SMG01_0042_A03.b : cccacccctcctgggccgtatgctcaaaagaacctctccttgtcaggctaaactcttcca
20080515C-006250 : CTCCTCCACGCT*GAGCGGCAGCCAGATGAGACCTGTCGGGG..................
---------+---------+---------+---------+---------+---------+ 908
LVR01_0048_B04.b : CTCCTCCACGCTTGAGCGGCAGCCAGATGAGCCCTGTCGGGGgaagcggaaggcgccggc
LVRM1_0039_H04.b :
SMG01_0063_B05.b : CTCCTCCACGCT*GAGCGGCAACCAGATGA*ACCTGTCGGGGaangcggaaggcgcgnca
SMG01_0042_A03.b : gctaaagggcaccaaaataacctgttgggggaagggaaggggccccatttaaggtgcccg
20080515C-006250 : ............................................................
---------+---------+---------+---------+---------+---------+ 908
LVR01_0048_B04.b : agtgcaggtgcgccgcctcccttgcacttcgccgctgcccttacgaccctggcgcccgcc
LVRM1_0039_H04.b :
SMG01_0063_B05.b : nttcaagtgcccggctcctgcactcgcgctgcactacgagcctgggccccggactgccct
SMG01_0042_A03.b : ccctctttctttcgcgggaaaaaaaaccgggcccccagaatttcccttggctttaataag
20080515C-006250 : ............................................................
---------+---------+---------+---------+---------+---------+ 908
LVR01_0048_B04.b : gaaccttcccggtgccccttgatcccattggccaggggcctggcccgccccccccccccc
LVRM1_0039_H04.b :
SMG01_0063_B05.b : ggcactgatcagtgcaaggctggccgccgccgcccccccctcaaccctagttaaagtact
SMG01_0042_A03.b : ggcggggggtggccccccccccccccctttaaaaccttttaaaaaaaatccccccgaaaa
20080515C-006250 : ............................................................
---------+---------+---------+---------+---------+---------+ 908
LVR01_0048_B04.b : cccccccgccttcaaaaccc
LVRM1_0039_H04.b :
SMG01_0063_B05.b : cttccgaaaaccaacaagcccaacaactggaaaacgaatcgaaccaatttaagaaatttc
SMG01_0042_A03.b : aaaaaacgggcaaaaaccggtaaaaaaggatttaaccctttttttaaagtcttggttttt
20080515C-006250 : ............................................................
---------+---------+---------+---------+---------+---------+ 908
LVR01_0048_B04.b :
LVRM1_0039_H04.b :
SMG01_0063_B05.b : gtatctttcccaggtaacccaggcgggtgttaccaccggggacccaaaccgggccaattt
SMG01_0042_A03.b : ttcccggggaaacccgggggggtgtgtacaaatgggggccaaaaaaggggggaaaatttt
20080515C-006250 : ............................................................
---------+---------+---------+---------+---------+---------+ 908
LVR01_0048_B04.b :
LVRM1_0039_H04.b :
SMG01_0063_B05.b : ttgggaaaaaaccctgaaagaaatgatcaaacctggtcctgacaaggcccgttccagctt
SMG01_0042_A03.b : tgggaaaaaaaatccgcaaaaaaaaagaaaaacaaccttttcctccgagaaggcgccgcc
20080515C-006250 : ............................................................
---------+---------+---------+---------+---------+---------+ 908
LVR01_0048_B04.b :
LVRM1_0039_H04.b :
SMG01_0063_B05.b : cccgggggtttttctcaaatccccgctagggaaactcaggggctcttggaggaaaatccc
SMG01_0042_A03.b : aacaatactccggggttttttttttgattatctcgccggaggt
20080515C-006250 : ............................................................
---------+---------+---------+---------+---------+---------+ 908
LVR01_0048_B04.b :
LVRM1_0039_H04.b :
SMG01_0063_B05.b : cccatattaaaaaattccagaaccccccagaggggcccccccccttatttttnnnttttt
SMG01_0042_A03.b :
20080515C-006250 : ............................................................
---------+---------+---------+---------+---------+---------+ 908
LVR01_0048_B04.b :
LVRM1_0039_H04.b :
SMG01_0063_B05.b : gaannngnaccannnntgaaaaatggtggtccccccaat
SMG01_0042_A03.b :
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