[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20080515C-006486
Length:
933
Sequence:
[FASTA format sequence]
GCAGCGTCAT GGCGCGCTTC TTCCGCGCGG GCCCGGGCTT ACCCTTCCGA GAGGTGCTCT
CGCGGGCAGT GTGGGGTCGT GCCGACAATG GCGGCCTCAG CCCGAAGGTC GGAACCGGAG
ACGCAGGGTC CCTTACAAAG CGTGAGCCGT TCCTCTCCAA GAGTGAGTGG CAAAAGAAGC
TGACTCCAGA GCAATTCCAC GTCACGAGAG AAAAAGGGAC AGAACCGCCT TTCAGTGGGA
CCTACCTGAA TAACAAGGAA GCAGGAATGT ATCACTGTGT GTGCTGTGAC AGCCCACTCT
TCAGCTCTGA GAAAAAGTAC TGCTCTGGCA CTGGATGGCC TTCATTTTCT GAGGCTCACG
GCACATCTGG CTCTGATGAG AGTGACACAG GGATCCTGAG ACGTGTGGAC ACCTCGCTGG
GAACAGCTCG CACGGAGGTT GTCTGCAAGC AGTGCGAAGC TCACCTTGGC CATGTGTTTC
CTGATGGACC TGGGCCTACA GGTCAGAGGT TTTGCATCAA CAGTGTGGCA CTCAAGTTCA
AACCAAGGAA ACACTGACCA TCGCCAGGAG TCCCTTTCTC TTCCACCCTC TCATTTCCAA
ACTCGATTTT CATAATTTAT GCAAATGACT AGTTTTATTA ATGACCAAAC TAGGCTAAGC
TTGCTGGCGT ACCTTCTCTA ATTCATTACC TGGAGTCAGC TCCACCCTGG CTCTGGCTCT
GACTAGAATT TCACGGAATG ACAGAGGGGC AGTCCTTTCC CTTAAATCAA CATCTGTGGG
CTTTGCCAGG ACCAGAGGGC ATGACTCTTT GGGGACATTA GGAGGCTGAT GGATAAGCCA
AAGAACTCCT ATAAAACTAT GCTGAATTTT CCATTGCAGT CAAGTGTTTC ACAGACATGT
ATAGGTGGAA AGGTCAACGA GAAGAGGAAT GAA
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | MSRB2 | methionine sulfoxide reductase B2 | 299 | 3e-81 | O |
|
| MSRB3 | methionine sulfoxide reductase B3 isoform 1 | 144 | 8e-35 | O |
|
| MSRB3 | methionine sulfoxide reductase B3 isoform 2 | 142 | 3e-34 | O |
|
| SEPX1 | selenoprotein X, 1 | 51.6 | 9e-07 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20080515C-006486 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVR01_0027_F12.b : cgggcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0043_A11.b : tttttggctagtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
UTR01_0081_F12.b :
20080515C-006486 : .............................GCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
---------+---------+---------+---------+---------+---------+ 31
OVR01_0027_F12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
TCH01_0043_A11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
UTR01_0081_F12.b : nttttgctagg
20080515C-006486 : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
---------+---------+---------+---------+---------+---------+ 91
OVR01_0027_F12.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
TCH01_0043_A11.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
UTR01_0081_F12.b : actatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20080515C-006486 : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
---------+---------+---------+---------+---------+---------+ 151
OVR01_0027_F12.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
TCH01_0043_A11.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
UTR01_0081_F12.b : xxxxxxxxxxgtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccgg
20080515C-006486 : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA
---------+---------+---------+---------+---------+---------+ 211
OVR01_0027_F12.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCGATTCCACGTCACGAGAGA
TCH01_0043_A11.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA
UTR01_0081_F12.b : agacgcagggtcccttacaaagcgtgagccgttcctctccaagagtgagtggcaaaagaa
20080515C-006486 : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
---------+---------+---------+---------+---------+---------+ 271
OVR01_0027_F12.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
TCH01_0043_A11.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
UTR01_0081_F12.b : gctgactcCAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
20080515C-006486 : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
---------+---------+---------+---------+---------+---------+ 331
OVR01_0027_F12.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
TCH01_0043_A11.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
UTR01_0081_F12.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
20080515C-006486 : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
---------+---------+---------+---------+---------+---------+ 391
OVR01_0027_F12.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
TCH01_0043_A11.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
UTR01_0081_F12.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
20080515C-006486 : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
---------+---------+---------+---------+---------+---------+ 451
OVR01_0027_F12.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
TCH01_0043_A11.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
UTR01_0081_F12.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
20080515C-006486 : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
---------+---------+---------+---------+---------+---------+ 511
OVR01_0027_F12.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
TCH01_0043_A11.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
UTR01_0081_F12.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
20080515C-006486 : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
---------+---------+---------+---------+---------+---------+ 571
OVR01_0027_F12.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
TCH01_0043_A11.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
UTR01_0081_F12.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
20080515C-006486 : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
---------+---------+---------+---------+---------+---------+ 631
OVR01_0027_F12.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
TCH01_0043_A11.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
UTR01_0081_F12.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
20080515C-006486 : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCGTACCTTCTCTAATTCATTACCT
---------+---------+---------+---------+---------+---------+ 691
OVR01_0027_F12.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
TCH01_0043_A11.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
UTR01_0081_F12.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCGTACCTTCTCTAATTCATTACCT
20080515C-006486 : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAATTTCACGGAATGACAGAGGGGCA
---------+---------+---------+---------+---------+---------+ 751
OVR01_0027_F12.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAATTTCACGGAATGACAGAGGGGCA
TCH01_0043_A11.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGGCTAGAATTTCACGGAATGACAGAGGGGCA
UTR01_0081_F12.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAATTTCACGGAATGACAGAGGGGCA
20080515C-006486 : GTCCTTTCCCTTAAATCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTC*T
---------+---------+---------+---------+---------+---------+ 808
OVR01_0027_F12.b : GTCCTTTCCCTTAAATCAACATCTGTGGGCTTTTGCCCAGGACCAGAGGGCATGACTCTT
TCH01_0043_A11.b : GTCCTTTCCCTTAAATCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTC*T
UTR01_0081_F12.b : GTCCTTTCCCTTAAATCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTC*T
20080515C-006486 : TTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
---------+---------+---------+---------+---------+---------+ 868
OVR01_0027_F12.b : TTGGGGACATTANGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
TCH01_0043_A11.b : TTGGGGACATTAGGAGGCTGATGGATAAGCC*AAGAACTCCTATAAAACTATGCTGAATT
UTR01_0081_F12.b : TTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
20080515C-006486 : TTCCATTGCAGTCAAGTGTTTCACAGACATGTATAGGTGGAAAGGTCA*ACGAGAAGAGG
---------+---------+---------+---------+---------+---------+ 927
OVR01_0027_F12.b : TTCCATTGCAgtcaagtgtttcacaaacttgtataggtgagaggttcaaacgaaaagagg
TCH01_0043_A11.b : TTCCATTGCAGTCAAGTGTTTCACAGACATGTATAGGTGGAAAGGTCA*ACGAGGAGAGG
UTR01_0081_F12.b : TTCCATTGCAGTCAAGTGTTTCACAGACATGTATAGGTG*AGAGGTCAAACGAGAAGAGG
20080515C-006486 : AATGAA......................................................
---------+---------+---------+---------+---------+---------+ 933
OVR01_0027_F12.b : aatgaaaatacgggatgaagattatccacagtcccagtggtggaaaaaggcaattaagga
TCH01_0043_A11.b : AATGAAatacgggatgaggatgatccacagtcccagtgggaaaaagcaaaaggaggcagg
UTR01_0081_F12.b : AATGAAaatccgggatgaggatgatccacagtccccagtgtggaaaaggcaaataaggag
20080515C-006486 : ............................................................
---------+---------+---------+---------+---------+---------+ 933
OVR01_0027_F12.b : gggagggtttggggaccaaccttgggttttgggggaaggcccattgtggggggatccccc
TCH01_0043_A11.b : ttgtggacaccttcttttgggaagcccttgtggggatcccgggaggcagaaatttttcca
UTR01_0081_F12.b : gcaggttggtggaacaactgccttttgggggagggacatgtgggggaatccccgggaagc
20080515C-006486 : ............................................................
---------+---------+---------+---------+---------+---------+ 933
OVR01_0027_F12.b : ggggaaaggccggggaaaattttttttccccaaaaac
TCH01_0043_A11.b : aaccttaaaggtcttaaaatctaattccacctctctaccggaattattttaagggccgtt
UTR01_0081_F12.b : caggaagaatttttccccaaaaccctttaaaattggccttgaaacatt
20080515C-006486 : ............................................................
---------+---------+---------+---------+---------+---------+ 933
OVR01_0027_F12.b :
TCH01_0043_A11.b : gtaaacttttgtaaagaaaaaaggggctaaagttaactttaaatggtaaataaa
UTR01_0081_F12.b :
TOP
TOP