[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20080515C-006795
Length:
1,015
Sequence:
[FASTA format sequence]
CATGCGCCAC AAAAGGTTCC GATCCGGAAA CTACCCATCC TCGTTAAGCA ACGAGACAGA
CCGCCTGGTA CACTGGTGCC ACGGGGCGCC CGGCGTCATC CACACGCTCA TGCAGGCGTA
CAAGGTGTTT AAGGAGGAGA AGTACCTGAG GGACGCCGTG GAGTGCAGCG ACGTGATTTG
GCAGCGGGGC CTGCTGCGCA AGGGCTACGG CATCTGCCAC GGGACTGCGG GCAACGGCTA
CTCCTTCCTC TCCCTTTACC GCCTCACGCA GGACAAGAAG TACCTCTACC GAGCTTGCAA
GTTTGCAGAG TGGTGTCTGG AGTACGGAGC ACATGGTTGC CGCATTCCCG ACAGGCCCTA
CTCTCTCTTC GAAGGCATGG CCGGCGCCAT TCACTTCCTC TCCGACATCC TGGCCCCCGA
GACAGCACGG TTTCCAGCAT TTGAACTCGG CTCTTCAGAG AGGGATCCAA AGGTGCAAAA
AGACTCCTAA GGGACCCGAC GGGACCACAG GCCGCCAGGT TGCCTGGCGC CTGACACAGA
AGCCACCGTG CATCCTGAGG AAGGGAGGAC GGAGGGAGCA GAGCCCCGCA GACCCCCGCC
CCGCCAGCCT GCTGTGCTCC CCTCGCTGGT GTCAGCGTGA CGTCTCCGTG TCCAGTGCTG
CGTAATGTTT GCATGTCCCT CGGTGTTTGC TCTCCGTAGG CGTAGGTTGT TCTCAGCGGA
AGCCCTTCTC TGTCCATGAG CCCGAGCTGG CCGTGCATGA GGGCACACAG CAGCCCCTTC
TCCGTACCCA ATAAAGCGGG GTGCTTCTGT ATTGGCAGAC AGGACACAGG CAGGTGGTGT
CTCTCTTATG TACCAGAAAG ACTCTCTTTT AAGATGCCAT CCCAGTGTGA GACTTTTCCC
AGCATTTCCT GTGGGACCCT TTTGGGGGAG CTTGAGAGAA AGACTGCTCC AGAAATGAAA
AGAAATAGCG GAGGTAGAGG GGCTTTCGCT GGANGGGGGC TGGGGAGCCT TGGCC
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | LANCL2 | LanC lantibiotic synthetase component C-like 2 | 315 | 3e-86 | |
|
| LANCL1 | lanthionine synthetase C-like protein 1 | 244 | 8e-65 | |
|
| LANCL3 | LanC lantibiotic synthetase component C-like 3 | 108 | 6e-24 |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20080515C-006795 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
SPL01_0057_B02.b : nnnnggcatgtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_H03.b : gagagctcttggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0028_D05.b :
20080515C-006795 : .....................CATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
---------+---------+---------+---------+---------+---------+ 39
SPL01_0057_B02.b : xxxxxxxxxxxxxxxxxxxxxCATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
OVR01_0037_H03.b : xxxxxxxxxxxxxxxxxxxxxxctgttcaactggAGGTTCCGATCCGGAAACTACCCATC
TCH01_0028_D05.b :
20080515C-006795 : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
---------+---------+---------+---------+---------+---------+ 99
SPL01_0057_B02.b : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
OVR01_0037_H03.b : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
TCH01_0028_D05.b :
20080515C-006795 : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
---------+---------+---------+---------+---------+---------+ 159
SPL01_0057_B02.b : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
OVR01_0037_H03.b : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
TCH01_0028_D05.b : nntttcggtagtgacatgac
20080515C-006795 : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
---------+---------+---------+---------+---------+---------+ 219
SPL01_0057_B02.b : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
OVR01_0037_H03.b : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
TCH01_0028_D05.b : agtttgtacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxA
20080515C-006795 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
---------+---------+---------+---------+---------+---------+ 279
SPL01_0057_B02.b : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
OVR01_0037_H03.b : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
TCH01_0028_D05.b : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
20080515C-006795 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
---------+---------+---------+---------+---------+---------+ 339
SPL01_0057_B02.b : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
OVR01_0037_H03.b : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
TCH01_0028_D05.b : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
20080515C-006795 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
---------+---------+---------+---------+---------+---------+ 399
SPL01_0057_B02.b : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
OVR01_0037_H03.b : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
TCH01_0028_D05.b : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
20080515C-006795 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
---------+---------+---------+---------+---------+---------+ 459
SPL01_0057_B02.b : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
OVR01_0037_H03.b : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
TCH01_0028_D05.b : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
20080515C-006795 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
---------+---------+---------+---------+---------+---------+ 519
SPL01_0057_B02.b : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
OVR01_0037_H03.b : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
TCH01_0028_D05.b : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
20080515C-006795 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
---------+---------+---------+---------+---------+---------+ 579
SPL01_0057_B02.b : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
OVR01_0037_H03.b : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
TCH01_0028_D05.b : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
20080515C-006795 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
---------+---------+---------+---------+---------+---------+ 633
SPL01_0057_B02.b : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
OVR01_0037_H03.b : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTGACCGTGCTCCCCTCGCTGGTGTC
TCH01_0028_D05.b : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
20080515C-006795 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
---------+---------+---------+---------+---------+---------+ 693
SPL01_0057_B02.b : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
OVR01_0037_H03.b : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
TCH01_0028_D05.b : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
20080515C-006795 : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAGCCCGAGCTGGCCG
---------+---------+---------+---------+---------+---------+ 753
SPL01_0057_B02.b : CCGTANGCGTANGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAGCCCGAGCTGGCCG
OVR01_0037_H03.b : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAGCCCGAGCTGGCCG
TCH01_0028_D05.b : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAGCCCGAGCTGGCCG
20080515C-006795 : TGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTATT
---------+---------+---------+---------+---------+---------+ 813
SPL01_0057_B02.b : TGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCCATAAAGCGGGGTGCTTCTGTATT
OVR01_0037_H03.b : TGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTATT
TCH01_0028_D05.b : TGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTATT
20080515C-006795 : GGCAGACAGGACACAGGCAGGTGGTG*TCTCTCTTATGTACCAGAAAGACTCTCTTTTAA
---------+---------+---------+---------+---------+---------+ 872
SPL01_0057_B02.b : GGCAGACAGGACACAGGCAGGGGGTGGTCTCTCTTATGTACCAAAAAGACTCccttttaa
OVR01_0037_H03.b : GGCAAACAGGACACAGGCAGGTGGTG*TCTCTCTTATGTACCAAAAAAACTCTCTTTTAA
TCH01_0028_D05.b : GGCAGACAGGACACAGGCAGGTGGTG*TCTCTCTTATGTACCAGAAAGACTCTCTTTTAA
20080515C-006795 : GATGCCATCCCAGTGTGAGACTTTTCCCAGCATTTCCT*GTGGGACCCTTTTGGGGGAGC
---------+---------+---------+---------+---------+---------+ 931
SPL01_0057_B02.b : gaagccatccccgtggtgaaacttttccccagcattttctggtgggaacctttttggggg
OVR01_0037_H03.b : GATGCCATCCCAGGGTGAAATTTTTCCCA*CATTTCCTTGTGGAACCCTTTTGGGGGgag
TCH01_0028_D05.b : GATGCCATCCCAGTGTGAGACTTTTCCCAGCATTTCCT*GTGGGACCCTTTTGGGGGAGC
20080515C-006795 : TTGAGAGAAAGACTGCTCCAGAAATGAAAAGAAATAGCGGAGGTAGAGGGGCTTTCGCTG
---------+---------+---------+---------+---------+---------+ 991
SPL01_0057_B02.b : aaacctggaaaaaaaaaactgcctcccgaaatgtaaaaagaaatataccgaaaggtaaaa
OVR01_0037_H03.b : ctttgaaaaaaaaattgctcccaaaaatggaaaaaaaaaaccggaaggtaaaaggggttt
TCH01_0028_D05.b : TTGAGAGAAAGACTGCTCCAGAAATGAAAAGAAATAGCGGAGGTAGAGGGGCTTTCGCTG
20080515C-006795 : GANGGGGGCTGGGGAGCCTTGGCC....................................
---------+---------+---------+---------+---------+---------+ 1015
SPL01_0057_B02.b : gggggctttctccctggaaaaggggggcttgggggaaaact
OVR01_0037_H03.b : ttccttggaaggggggtttggggaagcctttgggcccccgtttggaaccaaccccctctt
TCH01_0028_D05.b : GANGGGGGCTGGGGAGCCTTGGCCccagttggaccagcccctctgtggggtctatgctca
20080515C-006795 : ............................................................
---------+---------+---------+---------+---------+---------+ 1015
SPL01_0057_B02.b :
OVR01_0037_H03.b : tgggggttttttattgttctcccttttcgggggttttttagagaaaacccgcaagggggg
TCH01_0028_D05.b : ccttcggggtttaggaagcccgagggggggcgtggcaactctgccgggctcccctcgcaa
20080515C-006795 : ............................................................
---------+---------+---------+---------+---------+---------+ 1015
SPL01_0057_B02.b :
OVR01_0037_H03.b : ggccgcggggggggaaacttttctttcccccggggtttccccccccctttctccccaggg
TCH01_0028_D05.b : gctcttaatgtgaagttccaaaccttgaaatcagggcagtccgtgccctggggaggggaa
20080515C-006795 : ............................................................
---------+---------+---------+---------+---------+---------+ 1015
SPL01_0057_B02.b :
OVR01_0037_H03.b : gctcttttttttttttaggggggggttaaagaaaaatttttt
TCH01_0028_D05.b : cgatggaccggtgacggcggtttcgggggaacccttgtattggcccaggcaaacaagcaa
20080515C-006795 : ............................................................
---------+---------+---------+---------+---------+---------+ 1015
SPL01_0057_B02.b :
OVR01_0037_H03.b :
TCH01_0028_D05.b : aatgccgttgttgttataaaagaatggccctcattttttaccatcgtaacgtctgttcca
20080515C-006795 : ............................................................
---------+---------+---------+---------+---------+---------+ 1015
SPL01_0057_B02.b :
OVR01_0037_H03.b :
TCH01_0028_D05.b : gttcacaaaaacatttccgaagggcataagaaaaaaaaattcgctttcccagccccccaa
20080515C-006795 : ............................................................
---------+---------+---------+---------+---------+---------+ 1015
SPL01_0057_B02.b :
OVR01_0037_H03.b :
TCH01_0028_D05.b : taaactttttaaatttcgaaannacaaaaaaactaaaaaaaagggggcagtgttctaact
20080515C-006795 : ............................................................
---------+---------+---------+---------+---------+---------+ 1015
SPL01_0057_B02.b :
OVR01_0037_H03.b :
TCH01_0028_D05.b : cggggcgggccctcataatatcctgggggcccaatatctt
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