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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20080515C-006818

Length: 1,372

Sequence:  [FASTA format sequence]
TAGAAGGCAG TGGCTGCAGG TGGCTGTCGG TTTAAGCAGT TGCGTGCGCT CTCTCTCTCT
CTCTCTCTTC TGGGACTCTC GGGAGCTGCG GCTCCGGCGC CAGGTGGCAA GACGCGGGTC
TCGGAGACGC CAGCCTCCGT GCATCCCACT GTGGTTCGGG GGTGGTGGTT TTTAAGTACG
GAAGGGCCCT TGGTTCCACC GGAGGAATCT GCCGTGGGTC CCCGAGTTCC TGGAGCTGTC
TTCCGTATAC CTGAGTCAGA CCAGAGCACA GTCCGAAGGG CGGGCAGGAG GGCTCATCTG
TGTACTGTGT GCAGTAAAAC ATTCCAACCA TCTGTCAGGA AAGTGTTCCC ACTATGGATT
TCAAGTCTGT CTCAAAGCAG CAGTCCAGGA CCAGGACCTC TTCTAGGGAG GAGCGAGTGC
CTGATCAGAA TGGCTGTGGG ATGGTTTTAC CTGTCGGCCC TGGCGCTGTT CTCCCTGGGC
TCCATGTGCA TCCTCTCCAC CATCTATTGG ATGCGGTACT GGCACAAAGG CTTTGCCTGG
GATGGCACCA TACTCACGTT CAACTGGCAC CCGGTGCTCA TGGTGACTGG CATGGTGGTG
CTCTACAGTG CTGCGTCGCT GGCGTACCGC CTGCCCCAGT CATGGGTAGG GCCCAAGCTG
CCCTGGAAGT TGGGCCACGC AGCCATGCAC CTGATGGCCT TCATCCTGAC TGTGCTGGGG
CTGGCGGCCG TCTTTAACTT TCACAACCAC GAGAAGATCC CCAACCTCTA CTCCCTGCAC
AGCTGGCTGG GCATCACCAC CGTCTTCCTC TTCGCCTGCC AGTGGTTCTT GGGCTTTGTG
GTCTTTCTGC TGCCCTGGGC GTCTGTGCGG CTGCGCAGCC TCCTTAAACC CATCCACGTC
TTCTTTGGAG CCTCCATTCT CTCTCTGGCC ATTGCGTCTG TCATTTCCGG CATCAATGAG
AAGCTCTTCT TCAGTCTGAA AAATGGCACC ACTTCATACT CCAACCTGCC CGATGAGGCC
GTCTTCGCGA ACAGTGCGGG GATGCTGGTG GTGGTCTTTG GGCTGCTGGT GCTCTATATC
TTACAGGCCT CGTCTTGGAA ACGCCCAGAG CCAGGGCTCC AGGCCGAAAG ACAGACCCTG
TTGCACGGGG AGGAGTGAAG CAGGAGGGGG TTCCAGGAGC AGTTGCCAGG CGGTCTTCAG
AAGCTCTGCT TTTCCGGGGG CTCCCGTCTG GTTGGGGGCC CCAGTCCCCC TCGCCTCTGT
GCTGGGCCTG CTCTCCCCAC AGCCTGCTGC CCACCCCCTC TCCATGGTGG CTTTGGCTGC
TCCAGCCCCT CCTGGCATTG ACTTTCCCAG GCCTCTGTTT ACCCCGGGCC CC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CYBASC3	cytochrome b, ascorbate dependent 3	347	2e-95	O
		CYBRD1	cytochrome b reductase 1 isoform 1	178	1e-44	O
		CYB561	cytochrome b-561	135	6e-32	O
		CYB561	cytochrome b-561	135	6e-32	O
		CYB561	cytochrome b-561	135	6e-32	O
		CYBRD1	cytochrome b reductase 1 isoform 2	60.5	3e-09	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20080515C-006818 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SPL01_0104_H12.b : ntttggcatgtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PCT01_0025_H11.b :                                                             
PCT01_0018_A07.b :                                                             


20080515C-006818 : .....................TAGAAGGCAGTGGCTGCAGGTGGCTGTCGGTTTAAGCAG
                   ---------+---------+---------+---------+---------+---------+ 39
SPL01_0104_H12.b : xxxxxxxxxxxxxxxxxxxxxTAGAAGGCAGTGGCTGCAGGTGGCTGTCGGTTTAAGCAG
PCT01_0025_H11.b :                                                             
PCT01_0018_A07.b :                                                             


20080515C-006818 : TTGCGTGCGCTCTCTCTCTCTCTCTCTCTTCTGGGACTCTCGGGAGCTGCGGCTCCGGCG
                   ---------+---------+---------+---------+---------+---------+ 99
SPL01_0104_H12.b : TTGCGTGCGctctctctctctctctctctTCTGGGACTCTCGGGAGCTGCGGCTCCGGCG
PCT01_0025_H11.b :                                                             
PCT01_0018_A07.b :                                                             


20080515C-006818 : CCAGGTGGCAAGACGCGGGTCTCGGAGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGG
                   ---------+---------+---------+---------+---------+---------+ 159
SPL01_0104_H12.b : CCAGGTGGCAAGACGCGGGTCTCGGAGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGG
PCT01_0025_H11.b :                                                             
PCT01_0018_A07.b :                                                             


20080515C-006818 : GGGTGGTGGTTTTTAAGTACGGAAGGGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGT
                   ---------+---------+---------+---------+---------+---------+ 219
SPL01_0104_H12.b : GGGTGGTGGTTTTTAAGTACGGAAGGGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGT
PCT01_0025_H11.b :                                                             
PCT01_0018_A07.b :                                                             


20080515C-006818 : CCCCGAGTTCCTGGAGCTGTCTTCCGTATACCTGAGTCAGACCAGAGCACAGTCCGAAGG
                   ---------+---------+---------+---------+---------+---------+ 279
SPL01_0104_H12.b : CCCCGAGTTCCTGGAGCTGTCTTCCGTATACCTGAGTCAGACCAGAGCACAGTCCGAAGG
PCT01_0025_H11.b :                                                             
PCT01_0018_A07.b :                                                             


20080515C-006818 : GCGGGCAGGAGGGCTCATCTGTGTACTGTGTGCAGTAAAACATTCCAACCATCTGTCAGG
                   ---------+---------+---------+---------+---------+---------+ 339
SPL01_0104_H12.b : GCGGGCAGGAGGGCTCATCTGTGTACTGTGTGCAGTAAAACATTCCAACCATCTGTCAGG
PCT01_0025_H11.b :                                                             
PCT01_0018_A07.b :                                                             


20080515C-006818 : AAAGTGTTCCCACTATGGATTTCAAGTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCT
                   ---------+---------+---------+---------+---------+---------+ 399
SPL01_0104_H12.b : AAAGTGTTCCCACTATGGATTTCAAGTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCT
PCT01_0025_H11.b :                                                             
PCT01_0018_A07.b :                                                             


20080515C-006818 : CTTCTAGGGAGGAGCGAGTGCCTGATCAGAATGGCTGTGGGATGGTTTTACCTGTCGGCC
                   ---------+---------+---------+---------+---------+---------+ 459
SPL01_0104_H12.b : CTTCTAGGGAGGAGCGAGTGCCTGATCAGAATGGCTGTGGGATGGTTTTACCTGTCGGCC
PCT01_0025_H11.b :                        nnnagcattnnnncaaactacggtgcctaggtgtcgC
PCT01_0018_A07.b :                                      nnncccgttatannnnncctacg


20080515C-006818 : CTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCTCCACCATCTATTGGATGCGGTAC
                   ---------+---------+---------+---------+---------+---------+ 519
SPL01_0104_H12.b : CTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCTCCACCATCTATTGGATGCGGTAC
PCT01_0025_H11.b : CTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCTCCACCATCTATTGGATGCGGTAC
PCT01_0018_A07.b : gttccacggggtctCCTGGGCTCC*TGTGCATCCTCTCCACCATCTATTGGATGCGGTAC


20080515C-006818 : TGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCACGTTCAACTGGCACCCGGTGCTC
                   ---------+---------+---------+---------+---------+---------+ 579
SPL01_0104_H12.b : TGGCACGAAGGCTTTGCCTGAGATGGCACCATACTCACGTTCAACTGGCACCCGGTGCTC
PCT01_0025_H11.b : TGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCACGTTCAACTGGCACCCGGTGCTC
PCT01_0018_A07.b : TGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCACGTTCAACTGGCACCCGGTGCTC


20080515C-006818 : ATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGTCGCTGGCGTACCGCCTGCCCCAG
                   ---------+---------+---------+---------+---------+---------+ 639
SPL01_0104_H12.b : ATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGTCACTGGCGTACCGCCTGCCCCAG
PCT01_0025_H11.b : ATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGTCGCTGGCGTACCGCCTGCCCCAG
PCT01_0018_A07.b : ATGGTGACTGGCATGGTGGCGCTCTACAGTGCTGCGTCGCTGGCGTACCGCCTGCCCCAG


20080515C-006818 : TCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCCACGCAGCCATGCACCTGATGGCC
                   ---------+---------+---------+---------+---------+---------+ 699
SPL01_0104_H12.b : TCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCCACGCAGCCATGCACCTGATGGCC
PCT01_0025_H11.b : TCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCCACGCAGCCATGCACCTGATGGCC
PCT01_0018_A07.b : TCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCCACGCAGCCATGCACCTGATGGCC


20080515C-006818 : TTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTAACTTTCACAACCACGAGAAGATC
                   ---------+---------+---------+---------+---------+---------+ 759
SPL01_0104_H12.b : TTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTAACTCTCACAACCACGAGAAGATC
PCT01_0025_H11.b : TTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTAACTTTCACAACCACGAGAAGATC
PCT01_0018_A07.b : TTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTAACTTTCACAACCACGAGAAGATC


20080515C-006818 : CCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCACCACCGTCTTCCTCTTCGCCTGC
                   ---------+---------+---------+---------+---------+---------+ 819
SPL01_0104_H12.b : CCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCACCACCGTCTTTCTCTTCGCCTGC
PCT01_0025_H11.b : CCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCACCACCGTCTTCCTCTTCGCCTGC
PCT01_0018_A07.b : CCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCACCACCGTCTTCCTCTTCGCCTGC


20080515C-006818 : CAGTGGTTCTTGGGCTTTGTGGTCTTTCTGCTGCCC*TGGGCGTCTGTGCGGCTGCGCAG
                   ---------+---------+---------+---------+---------+---------+ 878
SPL01_0104_H12.b : CAGTGGTTCTTGGGCTTTGTGGTCTTTCTGCTGCCCCTGGGCGTCTGTGCGGCTGCGCAG
PCT01_0025_H11.b : CAGTGGTTCTTGGGCTTTGTGGTCTTTCTGCTGCCC*TGGGCGTCTGTGCGGCTGCGCAG
PCT01_0018_A07.b : CAGTGGTTCTTGGGCTTTGTGGTCTTTCTGCTGCCC*TGGGCGTCTGTGCGGCTGCGCAG


20080515C-006818 : CCTCCTTAAACCCATCCACGTCTTCTTTGGAGCCTCCATTCTCTCTCTGGCCATTGCGTC
                   ---------+---------+---------+---------+---------+---------+ 938
SPL01_0104_H12.b : CCTCCTTAAAC*CATCCACGTCTTCTTTGGAGCCTCCATTCTCTCTCTGGCCATTGCGTC
PCT01_0025_H11.b : CCTCCTTAAACCCATCCACGTCTTCTTTGGAGCCTCCATTCTCTCTCTGGCCATTGCGTC
PCT01_0018_A07.b : CCTCCTTAAACCCATCCACGTCTTCTTTGGAGCCTCCATTCTCTCTCTGGCCATTGCGTC


20080515C-006818 : TGTCATTTCCGGCATCAATGAGAAGCTCTTCTTCAGTCTGAAAAATGGCACCACTTCATA
                   ---------+---------+---------+---------+---------+---------+ 998
SPL01_0104_H12.b : TGTCATTTCCGGCATCAATGAGAAACTCTTCCTCAGTTTGAAAAAAGGGACCACTTTATA
PCT01_0025_H11.b : TGTCATTTCCGGCATCAATGAGAAGCTCTTCTTCAGTCTGAAAAATGGCACCACTTCATA
PCT01_0018_A07.b : TGTCATTTCCGGCATCAATGAGAAGCTCTTCTTCAGTCTGAAAAATGGCACCACTTCATA


20080515C-006818 : CTCCAACCTGCCCGATGAGGCCGTCTTCGCGAACAGTGCGGGGATGCTGGTGGTGGTCTT
                   ---------+---------+---------+---------+---------+---------+ 1058
SPL01_0104_H12.b : TTCCAACCGGCCCaataa                                         
PCT01_0025_H11.b : CTCCAACCTGCCCGATGAGGCCGTCTTCGCGAACAGTGCGGGGATGCTGGTGGTGGTCTT
PCT01_0018_A07.b : CTCCAACCTGCCCGATGAGGCCGTCTTCGCGAACAGTGCGGGGATGCTGGTGGTGGTCTT


20080515C-006818 : TGGGCTGCTGGTGCTCTATATCTTACAGGCCTCGTCTTGGAAACGCCCAGAGCCAGGGCT
                   ---------+---------+---------+---------+---------+---------+ 1118
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : TGGGCTGCTGGTGCTCTATATCTTACAGGCCTCGTCTTGGAAACGCCCAGAGCCAGTGCT
PCT01_0018_A07.b : TGGGCTGCTGGTGCTCTATATCTTACAGGCCTCGTCTTGGAAACGCCCAGAGCCAGGGCT


20080515C-006818 : CCAGGCCGAAAGACAGACCCTGTTGCACGGGGAGGAGTGAAGCAGGAGGGGGTTCCAGGA
                   ---------+---------+---------+---------+---------+---------+ 1178
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : CCAAGCCGAAAGACAGACCCTGTTGCACGGGGAGGAGTGAATCAGGAAGGGGTTCCAGGA
PCT01_0018_A07.b : CCAGGCCGAAAGACAGACCCTGTTGCACGGGGAGGAGTGAAGCAGGAGGGGGTTCCAGGA


20080515C-006818 : GCAGTTGCCAGGCGGTCTTCAGAAGCTCTGCTTTTCCGGGGGCTCCCGTCTGGTTGGGGG
                   ---------+---------+---------+---------+---------+---------+ 1238
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : GCAGTTGCCAGGCGGTCTTCAGAAGCTCTGCTTTTTCGGGGGCTCCCGTCTGGTTGGGGG
PCT01_0018_A07.b : GCAGTTGCCAGGCGGTCTTCAGAAGCTCTGCTTTTCCGGGGACTCCCGTCTGGTTTNGGG


20080515C-006818 : CCCCAGTCCCCCTCGCCTCTGTGCTGGGCCTGCTCTCCCCACAGCCTGCTGCCCACCCCC
                   ---------+---------+---------+---------+---------+---------+ 1298
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : CCCCAGTCCACCTCGCCTCTGTGCTGGACCTGCTCTCCCCACAGCCTGCTGCCAACCCCC
PCT01_0018_A07.b : CCCCAGTCCCCCTCGCCTCTGTGCTGGGCCTGCTCTCCCCACAGCCTGCTGCCCACCCCC


20080515C-006818 : TCTCCATGGTGGCTTTGGCTGCTCCAGCCCCTCCTGGCATTGACTTTCCCAGGCCTCTGT
                   ---------+---------+---------+---------+---------+---------+ 1358
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : TCTCCATGGTGGCTTTGGCTGCTTCAGCCCTTCTTGGCATTGACTTCCCCAGGTCTCTGG
PCT01_0018_A07.b : TCTCCATGGNTGCTTTGGCTGCTCCAGCCCCTTCTGNCATTGACTTTCCCAGTCTTCTGT


20080515C-006818 : TTACCCCGGGCCCC..............................................
                   ---------+---------+---------+---------+---------+---------+ 1372
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : TTACCCCGGGCCCCcttggcttggtttccccctcctgccaattcgtgctaaaaggaataa
PCT01_0018_A07.b : TTACCCCGGGCCCCcttgccctgnctgcccgcgccctgcactcttgttaaaaagagtcaa


20080515C-006818 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1372
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : gggtcattccccttctaaaccccgggaattgggaaaaaaacctaaagctcaaaaaaactg
PCT01_0018_A07.b : agtcaattcccctcagaccccccgggatgttggaaaaaacctgatgctcaaagaactggg


20080515C-006818 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1372
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : gaaatgaaccccanctggcctttaaatagggggaagcaaagttcttttatttttcccgga
PCT01_0018_A07.b : attgaacgcacctggcctggaataggggaagcaagcttcatacctttccgtgcagtaagg


20080515C-006818 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1372
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : aagtcagggccccccccggtttccattttttgtttggttttcttccgcccccccgaaggg
PCT01_0018_A07.b : cccccccgggttgcctcttcggcgggtccgcccaccctccgaatgaaggggggaaacctt


20080515C-006818 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1372
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : aagggggccaaaccctcccctttgggaaaagaaaggccaagggctcaactttccccaaaa
PCT01_0018_A07.b : cccttgaaaggaagggcaaggaaatttccccaaaataaagcccgtctttgccggttaaca


20080515C-006818 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1372
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : attaaagccccctttcccgtccccagtattaaaaaactcttttgtggtttaaaacggggg
PCT01_0018_A07.b : accctttttggtaaagggggaaaccctttttggaaaccccccccaaatttaaaggggggt


20080515C-006818 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1372
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : agaacccccttcccgggaaaaaccccccccggaaaatctctcacggggggcctgtaaaaa
PCT01_0018_A07.b : gaacaaaaatttttcccccgggaacatatttttggggggtttttttcccaaaaaaaatgg


20080515C-006818 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1372
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : agaaaaatttttctctccctttgggagagccttttttttttttagacccccgagtgttcc
PCT01_0018_A07.b : ccaacaaccccttttttatcacccccacaannnnannnnttgnnttttttctctccaacg


20080515C-006818 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1372
SPL01_0104_H12.b :                                                             
PCT01_0025_H11.b : acaca                                                      
PCT01_0018_A07.b : ggggctccgcttaaaaatt