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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20080515C-009318

Length: 852

Sequence:  [FASTA format sequence]
GCTTTTATGA TTTAACGTTA CTGTGTAAGT ACTTTCCCAC ATTGCTACAC TTGCTTGGTG
GTTCTCATGG AAATTCCATT TTCCATGATC TTGACATTCT GGCTGGTGTT TCTGTCATCG
TCGACTCTGG CTTTCTGTTA CCTGAGTCAG GGTGTCTCTC CGGTCTGAGC TCTCGATCAC
ACTTAGCTTT CCTCTTGCAT GTCCTGTGTC AAGCAGCTTC TTCTTCGTCC ACTCTTGTGA
AACCTTCTGA CCGGAGGCTG CTACAGCCTT GCCACTTCCT TTACGGGGCT CAAGCCCCCT
CACACCCGTC ATGCTCACTA GTACCCGATC ATCCTCTGCC CGGGAGTGCC ACCCCAGTTA
ACTGCCCAGG GATTCCGTCT CCACCAAAGA GCCTCTGCAA ACCCTGCCTC CTGGAAAAAC
CTCTTCCCTA TTGGTAATCC ATGAATGCTA AGATGCATTG TAGATATAAT TTATATTCAC
GGCCATTTAT GCCCTGCCTT ATGTAGGCAG TTCAGCACCA AGGAGAGTGC CTGTTTGCTT
TTGCTTGGGT GCAAGGTCAG TGGAGGATTT ACTGTGTTTA GGGCTCTGTA GTGCTGTTGG
CACGATGTAA TTTTTCCATA ATAGATGAAA AGCCAAACCC TGTATAAACA CACTTTAATA
ATGGTGAAGG CACTGGCAGA GTTGTGTGCC GAGGAAATAT TAAAGTTCAC ACTCCTGTAG
CTTAGACTTA ATTGAAGCCA GTAGTCTTCG TATTTACATT TGGGTTGTTT GTTTGAATGT
CAAACCTGGA GTGCTTCATC AGATGTCTTC CACTCCTCTA CGTATAACTG CTTAACCACC
TGCGCCAGGA TT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20080515C-009318 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SPL01_0053_F08.b :   nnnttgctaggactatnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPL01_0053_F09.b : nnnaagcataggactaagacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20080515C-009318 : ......................GCTTTTATGATTTAACGTTACTGTGTAAGTACTTTCCC
                   ---------+---------+---------+---------+---------+---------+ 38
SPL01_0053_F08.b : xxxxxxxxxxxxxxxxxxxxxxGCTTTTATGATTTAACGTTACTGTGTAAGTACTTTCCC
SPL01_0053_F09.b : xxxxxxxxxxxxxxxxxxxxxxGCTTTTATGATTTAACGTTACTGTGTAAGTACTTTCCC


20080515C-009318 : ACATTGCTACACTTGCTTGGTGGTTCTCATGGAAATTCCATTTTCCATGATCTTGACATT
                   ---------+---------+---------+---------+---------+---------+ 98
SPL01_0053_F08.b : ACATTGCTACACTTGCTTGGTGGTTCTCATGGAAATTCCATTTTCCATGATCTTGACATT
SPL01_0053_F09.b : ACATTGCTACACTTGCTTGGTGGTTCTCATGGAAATTCCATTTTCCATGATCTTGACATT


20080515C-009318 : CTGGCTGGTGTTTCTGTCATCGTCGACTCTGGCTTTCTGTTACCTGAGTCAGGGTGTCTC
                   ---------+---------+---------+---------+---------+---------+ 158
SPL01_0053_F08.b : CTGGCTGGTGTTTCTGTCATCGTCGACTCTGGCTTTCTGTTACCTGAGTCAGGGTGTCTC
SPL01_0053_F09.b : CTGGCTGGTGTTTCTGTCATCGTCGACTCTGGCTTTCTGTTACCTGAGTCAGGGTGTCTC


20080515C-009318 : TCCGGTCTGAGCTCTCGATCACACTTAGCTTTCCTCTTGCATGTCCTGTGTCAAGCAGCT
                   ---------+---------+---------+---------+---------+---------+ 218
SPL01_0053_F08.b : TCCGGTCTGAGCTCTCGATCACACTTAGCTTTCCTCTTGCATGTCCTGTGTCAAGCAGCT
SPL01_0053_F09.b : TCCGGTCTGAGCTCTCGATCACACTTAGCTTTCCTCTTGCATGTCCTGTGTCAAGCAGCT


20080515C-009318 : TCTTCTTCGTCCACTCTTGTGAAACCTTCTGACCGGAGGCTGCTACAGCCTTGCCACTTC
                   ---------+---------+---------+---------+---------+---------+ 278
SPL01_0053_F08.b : TCTTCTTCGTCCACTCTTGTGAAACCTTCTGACCGGAGGCTGCTACAGCCTTGCCACTTC
SPL01_0053_F09.b : TCTTCTTCGTCCACTCTTGTGAAACCTTCTGACCGGAGGCTGCTACAGCCTTGCCACTTC


20080515C-009318 : CTTTACGGGGCTCAAGCCCCCTCACACCCGTCATGCTCACTAGTACCCGATCATCCTCTG
                   ---------+---------+---------+---------+---------+---------+ 338
SPL01_0053_F08.b : CTTTACGGGGCTCAAGCCCCCTCACACCCGTCATGCTCACTAGTACCCGATCATCCTCTG
SPL01_0053_F09.b : CTTTACGGGGCTCAAGCCCCCTCACACCCGTCATGCTCACTAGTACCCGATCATCCTCTG


20080515C-009318 : CCCGGGAGTGCCACCCCAGTTAACTGCCCAGGGATTCCGTCTCCACCAAAGAGCCTCTGC
                   ---------+---------+---------+---------+---------+---------+ 398
SPL01_0053_F08.b : CCCGGGAGTGCCACCCCAGTTAACTGCCCAGGGATTCCGTCTCCACCAAAGAGCCTCTGC
SPL01_0053_F09.b : CCCGGGAGTGCCACCCCAGTTAACTGCCCAGGGATTCCGTCTCCACCAAAGAGCCTCTGC


20080515C-009318 : AAACCCTGCCTCCTGGAAAAACCTCTTCCCTATTGGTAATCCATGAATGCTAAGATGCAT
                   ---------+---------+---------+---------+---------+---------+ 458
SPL01_0053_F08.b : AAACCCTGCCTCCTGGAAAAACCTCTTCCCTATTGGTAATCCATGAATGCTAAGATGCAT
SPL01_0053_F09.b : AAACCCTGCCTCCTGGAAAAACCTCTTCCCTATTGGTAATCCATGAATGCTAAGATGCAT


20080515C-009318 : TGTAGATATAATTTATATTCACGGCCATTTATGCCCTGCCTTATGTAGGCAGTTCAGCAC
                   ---------+---------+---------+---------+---------+---------+ 518
SPL01_0053_F08.b : TGTAGATATAATTTATATTCACGGCCATTTATGCCCTGCCTTATGTAGGCAGTTCAGCAC
SPL01_0053_F09.b : TGTAGATATAATTTATATTCACGGCCATTTATGCCCTGCCTTATGTAGGCAGTTCAGCAC


20080515C-009318 : CAAGGAGAGTGCCTGTTTGCTTTTGCTTGGGTGCAAGGTCAGTGGAGGATTTACTGTGTT
                   ---------+---------+---------+---------+---------+---------+ 578
SPL01_0053_F08.b : CAAGGAGAGTGCCTGTTTGCTTTTGCTTGGGTGCAAGGTCAGTGGAGGATTTACTGTGTT
SPL01_0053_F09.b : CAAGGAGAGTGCCTGTTTGCTTTTGCTTGGGTGCAAGGTCAGTGGAGGATTTACTGTGTT


20080515C-009318 : TAGGGCTCTGTAGTGCTGTTGGCACGATGTAATTTTTCCATAATAGATGAAAAGCCAAAC
                   ---------+---------+---------+---------+---------+---------+ 638
SPL01_0053_F08.b : TAGGGCTCTGTAGTGCTGTTGGCACGATGTAATTTTTCCATAATAGATGAAAAGCCAAAC
SPL01_0053_F09.b : TAGGGCTCTGTAGTGCTGTTGGCACGATGTAATTTTTCCATAATAGATGAAAAGCCAAAC


20080515C-009318 : CCTGTATAAACACACTTTAATAATGGTGAAGGCACTGGCAGAGTTGTGTGCCGAGGAAAT
                   ---------+---------+---------+---------+---------+---------+ 698
SPL01_0053_F08.b : CCTGTATAAACACACTTTAATAATGGTGAAGGCACTGGCAGAGTTGTGTGCCGAGGAAAT
SPL01_0053_F09.b : CCTGTATAAACACACTTTAATAATGGTGAAGGCACTGGCAGAGTTGTGTGCCGAGGAAAT


20080515C-009318 : ATTAAAGTTCACACTCCTGTAGCTTAGACTTAATTGAAGCCAGTAGTCTTCGTATTTACA
                   ---------+---------+---------+---------+---------+---------+ 758
SPL01_0053_F08.b : ATTAAAGTTCACACTCCTGTAGCTTAGACTTTATTGAAGCCAGTAGTCTTCGTATTTACA
SPL01_0053_F09.b : ATTAAAGTTCACACTCCTGTAGCTTAGACTTAATTGAAGCCAGTAGTCTTCGTATTTACA


20080515C-009318 : TTTGGGTTGTTTGTTTGAATGTCAAACCTGGAGTGCTTCATCAGATGTCTTCCACTCCTC
                   ---------+---------+---------+---------+---------+---------+ 818
SPL01_0053_F08.b : TTTGGGGTGTTTGTTTGAATGTCAAACCTGNAGTGCTTCATCAGATGTCTTCCACTCCTC
SPL01_0053_F09.b : TTTGGGTTGTTTGTTTGAATGTCAGACCTGGAGTGCTTCATCAGATGTCTTCCACTCCTC


20080515C-009318 : TACGTATAACTGCT*TAACCACCTGCGCCAGGATT.........................
                   ---------+---------+---------+---------+---------+---------+ 852
SPL01_0053_F08.b : TACGTATAACTGCTTTAACCACCTGCGCCAGGATTcccctttggtctctatcttgtctcc
SPL01_0053_F09.b : TACGTATAACTGCT*TAACCACCTGCGCCAGGATTccctttggtctctatcttgtctccc


20080515C-009318 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 852
SPL01_0053_F08.b : gggcccanggacagaagtcccattttcttttgggtgccttggacttccctgacatggtgc
SPL01_0053_F09.b : ggccccaggacgaagtcgcattttccctttgggtgcctttggaaatcccgaacatggtgc


20080515C-009318 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 852
SPL01_0053_F08.b : ctggcttcctttgctcccattaactctagggctgaaaaggcaaaaattcctcattaactg
SPL01_0053_F09.b : cctggcttccctttgcctccaattatctctaatgcctgagaggccaaagattcttcatta


20080515C-009318 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 852
SPL01_0053_F08.b : tttgcttccctgacccaaaaaaaaaaaaaaaaaaaaaaggccccactgtgccccaaacct
SPL01_0053_F09.b : acctggtgcttcccctgaacccaaaaaaaaaaaaaaaaaaaaaaggccccattggggtcc


20080515C-009318 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 852
SPL01_0053_F08.b : gcaagct                                                    
SPL01_0053_F09.b :