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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20080515C-009713

Length: 1,039

Sequence:  [FASTA format sequence]
TAGAAGGCAG TGGCTGCAGG TGGCTGTCGG TTTAAGCAGT TGCGTGCGCT CTCTCTCTCT
CTCTCTCTCT TCTGGGACTC TCGGGAGCTG CGGCTCCGGC GCCAGGTGGC AAGACGCGGG
TCTCGGAGAC GCCAGCCTCC GTGCATCCCA CTGTGGTTCG GGGGTGGTGG TTTTTAAGTA
CGGAAGGGCC CTTGGTTCCA CCGGAGGAAT CTGCCGTGGG TCCCCGAGTT CCTGGAGCTG
TCTTCCGTAT ACCTGAGTCA GACCAGAGCA CAGTCCGAAG GGCGGGCAGG AGGGCTCATC
TGTGTACTGT GTGCAGTAAA ACATTCCAGC CATCTGTCAG GAAAGTGTTC CCACTATGGA
TTTCAAGTCT GTCTCAAAGC AGCAGTCCAG GACCAGGACC TCTTCTAGGG AGATGAGAAG
ACTGAGTCCT ACAAACATTA AATGATTTTC TCAAGCAGCC TCAGTGCATA AGAATTGGGG
TCCAGGCCAC CACTCCGTCA GCCTGCCTCT AGGTGTGAAG GAGCGAGTGC CTGATCAGAA
TGGCTGTGGG ATGGTTTTAC CTGTCGGCCC TGGCGCTGTT CTCCCTGGGC TCCATGTGCA
TCCTCTCCAC CATCTATTGG ATGCGGTACT GGCACAAAGG CTTTGCCTGG GATGGCACCA
TACTCACGTT CAACTGGCAC CCGGTGCTCA TGGTGACTGG CATGGTGGTG CTCTACAGTG
CTGCGTCGCT GGCGTACCGC CTGCCCCAGT CATGGGTAGG GCCCAAGCTG CCCTGGAAGT
TGGGCCACGC AGCCATGCAC CTGATGGCCT TCATCCTGAC TGTGCTGGGG CTGGCGGCCG
TCTTTAACTT TCACAACCAC GAGAAGATCC CCAACCTCTA CTCCCTGCAC AGCTGGCTGG
GCATCACCAC CGTCTTCCTC TTCCCCGGCC AGTGGTTCTT GGGCTTTGTG GTCTTTCTGC
TGCCCTGGGC GTCTGTGCGG GTGCGCAGCC TCTTAAACCC ATCCACGTCT TCTTTGGACC
CTCATTCTCT CTCTGGCCT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CYBASC3	cytochrome b, ascorbate dependent 3	251	3e-67	O
		CYBRD1	cytochrome b reductase 1 isoform 1	135	4e-32	O
		CYB561	cytochrome b-561	99.8	3e-21	O
		CYB561	cytochrome b-561	99.8	3e-21	O
		CYB561	cytochrome b-561	99.8	3e-21	O
		CYBRD1	cytochrome b reductase 1 isoform 2	60.5	2e-09	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20080515C-009713 : ......................................................TAGAAG
                   ---------+---------+---------+---------+---------+---------+ 6
ITT01_0029_H11.b : nagatgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAGAAG
MLN01_0058_B11.b :                                                             


20080515C-009713 : GCAGTGGCTGCAGGTGGCTGTCGGTTTAAGCAGTTGCGTGCGCTCTCTCTCTCTCTCTCT
                   ---------+---------+---------+---------+---------+---------+ 66
ITT01_0029_H11.b : GCAGTGGCTGCAGGTGGCTGTCGGTTTAAGCAGTTGCGTGCGctctctctctctctctct
MLN01_0058_B11.b :                                            nggctaggacttgacag


20080515C-009713 : CTCTTCTGGGACTCTCGGGAGCTGCGGCTCCGGCGCCAGGTGGCAAGACGCGGGTCTCGG
                   ---------+---------+---------+---------+---------+---------+ 126
ITT01_0029_H11.b : ctctTCTGGGACTCTCGGGAGCTGCGGCTCCGGCGCCAGGTGGCAAGACGCGGGTCTCGG
MLN01_0058_B11.b : tttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxt


20080515C-009713 : AGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGGGGGTGGTGGTTTTTAAGTACGGAAG
                   ---------+---------+---------+---------+---------+---------+ 186
ITT01_0029_H11.b : AGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGGGGGTGGTGGTTTTTAAGTACGGAAG
MLN01_0058_B11.b : agaaggcagtggctgcaggtggctgtcggtttaagcaGTGGTGGTTTTTAAGTACGGAAG


20080515C-009713 : GGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGTCCCCGAGTTCCTGGAGCTGTCTTCC
                   ---------+---------+---------+---------+---------+---------+ 246
ITT01_0029_H11.b : GGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGTCCCCGAGTTCCTGGAGCTGTCTTCC
MLN01_0058_B11.b : GGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGTCCCCGAGTTCCTGGAGCTGTCTTCC


20080515C-009713 : GTATACCTGAGTCAGACCAGAGCACAGTCCGAAGGGCGGGCAGGAGGGCTCATCTGTGTA
                   ---------+---------+---------+---------+---------+---------+ 306
ITT01_0029_H11.b : GTATACCTGAGTCAGACCAGAGCACAGTCCGAAGGGCGGGCAGGAGGGCTCATCTGTGTA
MLN01_0058_B11.b : GTATACCTGAGTCAGACCAGAGCACAGTCCGAAGGGCGGGCAGGAGGGCTCATCTGTGTA


20080515C-009713 : CTGTGTGCAGTAAAACATTCCAGCCATCTGTCAGGAAAGTGTTCCCACTATGGATTTCAA
                   ---------+---------+---------+---------+---------+---------+ 366
ITT01_0029_H11.b : CTGTGTGCAGTAAAACATTCCAGCCATCTGTCAGGAAAGTGTTCCCACTATGGATTTCAA
MLN01_0058_B11.b : CTGTGTGCAGTAAAACATTCCAGCCATCTGTCAGGAAAGTGTTCCCACTATGGATTTCAA


20080515C-009713 : GTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCTCTTCTAGGGAGATGAGAAGACTGAG
                   ---------+---------+---------+---------+---------+---------+ 426
ITT01_0029_H11.b : GTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCTCTTCTAGGGAGATGAGAAGACTGAG
MLN01_0058_B11.b : GTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCTCTTCTAGGGAGATGAGAAGACTGAG


20080515C-009713 : TCCTACAAACATTAAATGATTTTCTCAAGCAGCCTCAGTGCATAAGAATTGGGGTCCAGG
                   ---------+---------+---------+---------+---------+---------+ 486
ITT01_0029_H11.b : TCCTACAAACATTAAATGATTTTCTCAAGCAGCCTCAGTGCATAAGAATTGGGGTCCAGG
MLN01_0058_B11.b : TCCTACAAACATTAAATGATTTTCTCAAGCAGCCTCAGTGCATAAGAATTGGGGTCCAGG


20080515C-009713 : CCACCACTCCGTCAGCCTGCCTCTAGGTGTGAAGGAGCGAGTGCCTGATCAGAATGGCTG
                   ---------+---------+---------+---------+---------+---------+ 546
ITT01_0029_H11.b : CCACCACTCCGTCAGCCTGCCTCTAGGTGTGAAGGAGCGAGTGCCTGATCAGAATGGCTG
MLN01_0058_B11.b : CCACCACTCCGTCAGCCTGCCTCTAGGTGTGAAGGAGCGAGTGCCTGATCAGAATGGCTG


20080515C-009713 : TGGGATGGTTTTACCTGTCGGCCCTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCT
                   ---------+---------+---------+---------+---------+---------+ 606
ITT01_0029_H11.b : TGGGATGGTTTTACCTGTCGGCCCTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCT
MLN01_0058_B11.b : TGGGATGGTTTTACCTGTCGGCCCTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCT


20080515C-009713 : CCACCATCTATTGGATGCGGTACTGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCA
                   ---------+---------+---------+---------+---------+---------+ 666
ITT01_0029_H11.b : CCACCATCTATTGGATGCGGTACTGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCA
MLN01_0058_B11.b : CCACCATCTATTGGATGCGGTACTGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCA


20080515C-009713 : CGTTCAACTGGCACCCGGTGCTCATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGT
                   ---------+---------+---------+---------+---------+---------+ 726
ITT01_0029_H11.b : CGTTCAACTGGCACCCGGTGCTCATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGT
MLN01_0058_B11.b : CGTTCAACTGGCACCCGGTGCTCATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGT


20080515C-009713 : CGCTGGCGTACCGCCTGCCCCAGTCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCC
                   ---------+---------+---------+---------+---------+---------+ 786
ITT01_0029_H11.b : CGCTGGCGTACCGCCTGCCCCAGTCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCC
MLN01_0058_B11.b : CGCTGGCGTACCGCCTGCCCCAGTCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCC


20080515C-009713 : ACGCAGCCATGCACCTGATGGCCTTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTA
                   ---------+---------+---------+---------+---------+---------+ 846
ITT01_0029_H11.b : ACGCAGCCATGCACCTGATGGCCTTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTA
MLN01_0058_B11.b : ACGCAGCCATGCACCTGATGGCCTTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTA


20080515C-009713 : ACTTTCACAACCACGAGAAGATCCCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCA
                   ---------+---------+---------+---------+---------+---------+ 906
ITT01_0029_H11.b : ACTTTCACAACCCCGAAGAGATCCCCAACCTCTACTCCCTGCAAAGCTGGCTGGGCATCA
MLN01_0058_B11.b : ACTTTCACAACCACGAGAAGATCCCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCA


20080515C-009713 : CCACCGTC*TTCCTCTTCCCCGGCCAGTGGTTCTTGGGCTTTGTGGTCTTTCTGCTGCCC
                   ---------+---------+---------+---------+---------+---------+ 965
ITT01_0029_H11.b : CCACCGTCCTTCCTCTTCCCCGGCCA*TGGTTCTTGGGCTTTGGGGTCTTTCGGCTGCCC
MLN01_0058_B11.b : CCACCGTC*TTCCTCTTCGCCTGGCAGTGGGTCTTGGGCTTTGTGGTCTTTCTGCTGCCC


20080515C-009713 : TGGGCGTCTGTGCGGGTGCGCAGCCTCTTAAACCCATCCACGTCTTCTTTGGACCCTCAT
                   ---------+---------+---------+---------+---------+---------+ 1025
ITT01_0029_H11.b : TGGGCGTttggtgcggttcccaaccctccttaaacccttccacgtccttctttggagcct
MLN01_0058_B11.b : TGGGCGTCTGTGCGGGTGCGCAGCCTCTTAAACCCATCCACGTCTTCTTTGGACCCTCAT


20080515C-009713 : TCTCTCTCTGGCCT..............................................
                   ---------+---------+---------+---------+---------+---------+ 1039
ITT01_0029_H11.b : cctttctctccctggccatttggttcggtcatttcgggaatcatggaaaacctccttttc
MLN01_0058_B11.b : TCTCTCTCTGGCCTtgcctctgtcatttccggcatccatgaaaactcttcttcagtttga


20080515C-009713 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1039
ITT01_0029_H11.b : atttttgaaaaaggggcccactttcatactccaacctggccggggagaggccttcttcgc
MLN01_0058_B11.b : aaaagggcaccatttcttattccacctgccccgtggagccgtctttccaaacatgccggg


20080515C-009713 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1039
ITT01_0029_H11.b : caaaaatgtcgggaatacctggggggggtcttttgggctcgggggggctcaaatttaaag
MLN01_0058_B11.b : aatctggggggggtctttgagcttctgggggtctatatcttaaggccctcttcttgaaac


20080515C-009713 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1039
ITT01_0029_H11.b : gggccctccttttgtgaacaccccaagaacgcgggctctcggcccaaaaaaaacatcctg
MLN01_0058_B11.b : ccccaaaccagggctccaggccaaagaaaaaaccgt                       


20080515C-009713 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1039
ITT01_0029_H11.b : gt                                                         
MLN01_0058_B11.b :