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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20080515C-010572

Length: 812

Sequence:  [FASTA format sequence]
CTGTTAGCCG TTAGAGCGTG GTGGGGATGG CAGTGTTTCA GGGAACTTAG CCTACTTCTG
GGGCTTTTGT GTCTTTTGGC AGTTTGGTGA CTCTTATTCG ACATCCGTCC GAATTAATGA
ACGTTCCTCT TCATCAGCAA CAAAACAAAT GCACAACACT GGTGAAAAAC AAGACTGCTG
CGGCCGCTAC TGCTTTGCAG TTTACATGCC CTCTGTTCAC TGCAAATGCG TGCTCTGCTG
CTGGGACTTC GAGTCTCTCA CAAACACAGA GCTCTAGTAA CTCATGTTCT GTACTTGAAG
CTGCCAAGCA TCAGGATATT GGATTGCCTC GAGCGTTTTC CTTCTGCTAT CAGCAAGAAA
TTGAATCCAC TAAACAGACT CTGGGGAGTA GAAACAAAGC TTTGCCTGAG CAGGTTTGGA
TTAAAGTAGG AGAAGAAGCG CTCTGTAAAC AGGCCTTAAA CAGGAGGAAC CGGAGCAGGC
TACGCCAGCT GGACGCCAGC GGGGAGCGCC GGGCGCTCGG AGAGATTCAG AACGTGGGCG
AAGGCCCCGT GGCCGCGCAG GGCCCCTGGC AGCCCGAGTC CTCGCAGTCC AGCCTCGGGG
AGCAGCCGCA GGGCGGGCCC CAGGGAGGGA GGTCCCAGCG GCGGGAGAGG CACACCGCAT
GGAAAGAGAC AGGAGGCGCA GGATCCGCAT CTGCTGTGAC GAGCTGAAAC TCTTGGTCCC
GTTCTGCAAC GCCGAGACGG ACAAGGCGAC CACCCTGCAG TGGAACACGG CCTTTCCTCA
GTACATTCAG GAGAGACACC GGGACTCTCT TA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TCFL5	transcription factor-like 5 protein	223	1e-58

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20080515C-010572 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LVRM1_0160_D07.b : tagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0082_G07.b :               ntttgatgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20080515C-010572 : .CTGTTAGCCGTTAGAGCGTGGTGGGGATGGCAGTGTTTCAGGGAACTTAGCCTACTTCT
                   ---------+---------+---------+---------+---------+---------+ 59
LVRM1_0160_D07.b : xCTGTTAGCCGTTAGAGCGTGGTGGGGATGGCAGTGTTTCAGGGAACTTAGCCTACTTCT
ITT01_0082_G07.b : xxxxxxxxxxGTTAGAGCGTGGTGGGGATGGCAGTGTTTCAGGGAACTTAGCCTACTTCT


20080515C-010572 : GGGGCTTTTGTGTCTTTTGGCAGTTTGGTGACTCTTATTCGACATCCGTCCGAATTAATG
                   ---------+---------+---------+---------+---------+---------+ 119
LVRM1_0160_D07.b : GGGGCTTTTGTGTCTTTTGGCAGTTTGGTGACTCTTATTCGACATCCGTCCGAATTAATG
ITT01_0082_G07.b : GGGGCTTTTGTGTCTTTTGGCAGTTTGGTGACTCTTATTCGACATCCGTCCGAATTAATG


20080515C-010572 : AACGTTCCTCTTCATCAGCAACAAAACAAATGCACAACACTGGTGAAAAACAAGACTGCT
                   ---------+---------+---------+---------+---------+---------+ 179
LVRM1_0160_D07.b : AACGTTCCTCTTCATCAGCAACAAAACAAATGCACAACACTGGTGAAAAACAAGACCGCT
ITT01_0082_G07.b : AACGTTCCTCTTCATCAGCAACAAAACAAATGCACAACACTGGTGAAAAACAAGACTGCT


20080515C-010572 : GCGGCCGCTACTGCTTTGCAGTTTACATGCCCTCTGTTCACTGCAAATGCGTGCTCTGCT
                   ---------+---------+---------+---------+---------+---------+ 239
LVRM1_0160_D07.b : GCGGCCGCTACTGCTTTGCAGTTTACATGCCCTCTGTTCACTGCAAATGCGTGCTCTGCT
ITT01_0082_G07.b : GCGGCCGCTACTGCTTTGCAGTTTACATGCCCTCTGTTCACTGCAAATGCGTGCTCTGCT


20080515C-010572 : GCTGGGACTTCGAGTCTCTCACAAACACAGAGCTCTAGTAACTCATGTTCTGTACTTGAA
                   ---------+---------+---------+---------+---------+---------+ 299
LVRM1_0160_D07.b : GCTGGGACTTCGAGTCTCTCACAAACACAGAGCTCTAGTAACTCATGTTCTGTACTTGAA
ITT01_0082_G07.b : GCTGGGACTTCGAGTCTCTCACAAACACAGAGCTCTAGTAACTCATGTTCTGTACTTGAA


20080515C-010572 : GCTGCCAAGCATCAGGATATTGGATTGCCTCGAGCGTTTTCCTTCTGCTATCAGCAAGAA
                   ---------+---------+---------+---------+---------+---------+ 359
LVRM1_0160_D07.b : GCTGCCAAGCATCAGGATATTGGATTGCCTCGAGCGTTTTCCTTCTGCTATCAGCAAGAA
ITT01_0082_G07.b : GCTGCCAAGCATCAGGATATTGGATTGCCTCGAGCGTTTTCCTTCTGCTATCAGCAAGAA


20080515C-010572 : ATTGAATCCACTAAACAGACTCTGGGGAGTAGAAACAAAGCTTTGCCTGAGCAGGTTTGG
                   ---------+---------+---------+---------+---------+---------+ 419
LVRM1_0160_D07.b : ATTGAATCCACTAAACAGACTCTGGGGAGTAGAAACAAAGCTTTGCCTGAGCAGGTTTGG
ITT01_0082_G07.b : ATTGAATCCACTAAACAGACTCTGGGGAGTAGAAACAAAGCTTTGCCTGAGCAGGTTTGG


20080515C-010572 : ATTAAAGTAGGAGAAGAAGCGCTCTGTAAACAGGCCTTAAACAGGAGGAACCGGAGCAGG
                   ---------+---------+---------+---------+---------+---------+ 479
LVRM1_0160_D07.b : ATTAAAGTAGGAGAAGAAGCGCTCTGTAAACAGGCCCTAAACAGGAGGAACCGGAGCAGG
ITT01_0082_G07.b : ATTAAAGTAGGAGAAGAAGCGCTCTGTAAACAGGCCTTAAACAGGAGGAACCGGAGCAGG


20080515C-010572 : CTACGCCAGCTGGACGCCAGCGGGGAGCGCCGGGCGCTCGGAGAGATTCAGAACGTGGGC
                   ---------+---------+---------+---------+---------+---------+ 539
LVRM1_0160_D07.b : CTACGCCAGCTGGACGCCAGCGGGGAGCGCCGGGCGCTCGGAGAGATTCATAACATGGGC
ITT01_0082_G07.b : CTACGCCAGCTGGACGCCAGCGGGGAGCGCCGGGCGCTCGGAGAGATTCAGAACGTGGGC


20080515C-010572 : GAAGGCCCCGTGGCCGCGCAGGGCCCCTGGCAGCCCGAGTCCTCGCAGTCCAGCCTCGGG
                   ---------+---------+---------+---------+---------+---------+ 599
LVRM1_0160_D07.b : GAAAGCCCCGCGGCCGCGCAGGGCCCCTGGCAGCCCGAGTCCTCGCAGTCCAGCCTCGGG
ITT01_0082_G07.b : GAAGGCCCCGTGGCCGCGCAGGGCCCCTGGCAGCCCGAGTCCTCGCAGTCCAGCCTCGGG


20080515C-010572 : GAGCAGCCGCAGGGCGGGCCCCAGGGAGGGAGGTCCCAGCGGCGGGAGAGGCACA*CCGC
                   ---------+---------+---------+---------+---------+---------+ 658
LVRM1_0160_D07.b : GAGCAGCCGCAGGGCGGCCCCCACGGAGGGAGGTCCCACCGGCGGGAGAGGCACA*CCGC
ITT01_0082_G07.b : GAGCAGCCGCAGGGCGGGCCCCAGGGAGGGAGGTCCCAGCGGCGGGAGAGGCACAACCGC


20080515C-010572 : ATGGAAAGAGACAGGAGGCGCAGGATCCGCATCTGCTGTGACGAGCTGAAACTCTTGGTC
                   ---------+---------+---------+---------+---------+---------+ 718
LVRM1_0160_D07.b : ATGGAAAGAGACAGGAGGCGCAGGATTCGCATCTGCTGTGACGAGCTGAAACTCTTGGTT
ITT01_0082_G07.b : ATGGAAAGAGACAGGANGCGCAGGATCCGCATCTGCTGTGACGAGCTGAACCTCTTGGTC


20080515C-010572 : CCGTTCTGCAACGCCGAGACGGACAAGGCGACCACCCTGCAGTGGAACACGGCCTTTCCT
                   ---------+---------+---------+---------+---------+---------+ 778
LVRM1_0160_D07.b : CCCTTCTGCAACGCCGAGACAGACAAGGCGACCACCCTGn                   
ITT01_0082_G07.b : CCGTTCTGCAACGCCGAGACGGACAAAGCGACCACCCTGCAGTGGAACACGGCCTTTCCT


20080515C-010572 : CAGTACATTCAGGAGAGACACCGGGACTCTCTTA..........................
                   ---------+---------+---------+---------+---------+---------+ 812
LVRM1_0160_D07.b :                                                             
ITT01_0082_G07.b : CAGTACATTCAGGAGAGACACCGGGACTCTCTTAagaggaaattgagagtgtgttttgcg


20080515C-010572 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 812
LVRM1_0160_D07.b :                                                             
ITT01_0082_G07.b : taaaaacggcagacggctaagctgaccagatcggattccctggtgacgtgtcccgcacag


20080515C-010572 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 812
LVRM1_0160_D07.b :                                                             
ITT01_0082_G07.b : gagactctacagagcaccccgcgacggagaagcagtgactggaccggacccccgctcccg


20080515C-010572 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 812
LVRM1_0160_D07.b :                                                             
ITT01_0082_G07.b : gggagcgagtgccgtcctcggtggccaaaaagtccccaggcctgaactcggttctaaggg


20080515C-010572 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 812
LVRM1_0160_D07.b :                                                             
ITT01_0082_G07.b : ctcactgaaggacgtgccccgtgaatggaatcccgtgggggatctgaaagcgcattttgt


20080515C-010572 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 812
LVRM1_0160_D07.b :                                                             
ITT01_0082_G07.b : gggaagtttaccaagccatggtgtccctccccccactggggaagaagacacctgacctta


20080515C-010572 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 812
LVRM1_0160_D07.b :                                                             
ITT01_0082_G07.b : aaaaaaaatttcaatacctgccgaatccccaggttttctaaagggaaactaaaaaaaata


20080515C-010572 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 812
LVRM1_0160_D07.b :                                                             
ITT01_0082_G07.b : acctcttgtattgcttatcggaaaggaaggccttcccttttttatacatttaaaagccct


20080515C-010572 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 812
LVRM1_0160_D07.b :                                                             
ITT01_0082_G07.b : cttaacccgaaaaataatttcccccgaaaaattggaaatttcccctggctcccctctcct


20080515C-010572 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 812
LVRM1_0160_D07.b :                                                             
ITT01_0082_G07.b : taaaacccggcgcaaaaattttataagg