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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20080515C-010635

Length: 983

Sequence:  [FASTA format sequence]
GTGTTCGTGT AGGGGAGGCT GGAAGCCGCA GGAGCGGGAG ACGGTGGAGG GGATTTTGAG
AAGAAAACTG CGGTAGCGAC CTCACTCGGT GGTACAAGAG GGGAACGCTA GTCCCTCCGA
AAGCCGGGTT ACTGCGAACG CACCAGCTGA GCCCTTAGTA CTGCAACCCC CACCCTCCTT
TGGTTTGTGG AGGAGCCTGA CCACTCTGCC TCTTATGGCC ACAATGCTGA CCGCCCGCCT
CTCCAGACCC CTGTCGCAGC TCCCAAGGAA AACCCTGAAT TTCTCTGAGA GAGAAAATGG
AGCAAGAGGC TCGCTGCTGT TTTACTCTCC CTCCTTTGTC CCTGGCAGCC GTCGGACTTA
TGCTGATTCG GTGAACCCGG TTGGCAGCAA AGCTGTCCTG GTCACAGGCT GTGACTCTGG
ATTTGGGTTC TCACTGGCCA AGCATCTGCA TTCAAAAGGC TTCCTTGTAT TTGCTGGCTG
CTTGATGAAG GACAAAGGGC ATGACGGGGT CAAGGAACTG GACAGCTTGA AGAGTGATCG
ATTAAGAACC GTCCAGCTCA ATGTCTGCAA AAGTGAAGAA GTAGAGAAAG TGGTGGAGAC
CATCCGCTCG AGCTTGCAGG ACCCTGAGAA AGGCTTGTGG GGCCTGGTTA ACAATGCAGG
CATCTCAACG TTCGGGGACG TGGAATTCAC CAGCATGGAG ACCTACAAGG AGGTGGCAGA
AGTGAACCTC TGGGGCACGG TGCGGGTGAC AAAATCCTTT CTCCCTCTCA TCCGGAGGGC
CAAAGATTTC CAAGAAACAA CAACCTCAAA ATGTCCAAGT CATCAAGGAC CCCATCTGGA
CGGGAAAGCT TGGTACTGCT CGCTGTTTTA CTACCCAGTT CCCTTGTCAC CTGGGCAAGT
CCCTTCTCCA TTTTCCACCT CACTCTCCTC ATTTAAAAAT AGCAGTAATG ACAACAATCA
TAACCATTCC TAACACGCTG TGA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		BDH1	3-hydroxybutyrate dehydrogenase precursor	287	8e-78	O
		BDH1	3-hydroxybutyrate dehydrogenase precursor	287	8e-78	O
		BDH1	3-hydroxybutyrate dehydrogenase precursor	287	8e-78	O
		HSD17B2	hydroxysteroid (17-beta) dehydrogenase 2	99.4	4e-21	O
		RDH16	retinol dehydrogenase 16	94.7	1e-19	O
		DHRS9	NADP-dependent retinol dehydrogenase/reductase	93.2	3e-19	O
		DHRS9	NADP-dependent retinol dehydrogenase/reductase	93.2	3e-19	O
		HSD17B6	hydroxysteroid (17-beta) dehydrogenase 6	92.4	5e-19	O
		HSD11B2	hydroxysteroid (11-beta) dehydrogenase 2	87.8	1e-17	O
		SDR-O	orphan short-chain dehydrogenase / reductase	82	7e-16	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20080515C-010635 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LVRM1_0109_C11.b :                     nagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0026_B11.b : ctttgggtgaatatanngacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20080515C-010635 : ......................GTGTTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG
                   ---------+---------+---------+---------+---------+---------+ 38
LVRM1_0109_C11.b : xxxxxxxxxxxxxxxxxxxxxxGTGTTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG
LVR01_0026_B11.b : xxxxxxxxxxxxxxxxxxxxxxGTGTTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG


20080515C-010635 : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG
                   ---------+---------+---------+---------+---------+---------+ 98
LVRM1_0109_C11.b : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG
LVR01_0026_B11.b : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG


20080515C-010635 : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG
                   ---------+---------+---------+---------+---------+---------+ 158
LVRM1_0109_C11.b : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG
LVR01_0026_B11.b : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG


20080515C-010635 : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG
                   ---------+---------+---------+---------+---------+---------+ 218
LVRM1_0109_C11.b : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG
LVR01_0026_B11.b : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG


20080515C-010635 : CCACAATGCTGACCGCCCGCCTCTCCAGACCCCTGTCGCAGCTCCCAAGGAAAACCCTGA
                   ---------+---------+---------+---------+---------+---------+ 278
LVRM1_0109_C11.b : CCACAATGCTGACCGCCCGCCTCTCCAGGCCCCTGTCACAGCTCCCAAGGAAAACCCTGA
LVR01_0026_B11.b : CCACAATGCTGACCGCCCGCCTCTCCAGACCCCTGTCGCAGCTCCCAAGGAAAACCCTGA


20080515C-010635 : ATTTCTCTGAGAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG
                   ---------+---------+---------+---------+---------+---------+ 338
LVRM1_0109_C11.b : ATTTCTCTGACAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG
LVR01_0026_B11.b : ATTTCTCTGAGAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG


20080515C-010635 : TCCCTGGCAGCCGTCGGACTTATGCTGATTCGGTGAACCCGGTTGGCAGCAAAGCTGTCC
                   ---------+---------+---------+---------+---------+---------+ 398
LVRM1_0109_C11.b : TCCCTGGCGGCCGTCGGACTTATGCTGATTCGGTGAACCCGGTTGGTAGCAAAGCTGTCC
LVR01_0026_B11.b : TCCCTGGCAGCCGTCGGACTTATGCTGATTCGGTGAACCCGGTTGGCAGCAAAGCTGTCC


20080515C-010635 : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG
                   ---------+---------+---------+---------+---------+---------+ 458
LVRM1_0109_C11.b : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG
LVR01_0026_B11.b : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG


20080515C-010635 : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAGGACAAAGGGCATGACGGGGTCAAGGAAC
                   ---------+---------+---------+---------+---------+---------+ 518
LVRM1_0109_C11.b : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAAGACAAAGGGCATGACGGGGTCAAGGAAC
LVR01_0026_B11.b : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAGGACAAAGGGCATGACGGGGTCAAGGAAC


20080515C-010635 : TGGACAGCTTGAAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCAAAAGTGAAG
                   ---------+---------+---------+---------+---------+---------+ 578
LVRM1_0109_C11.b : TGGACAGCTTGTAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCTAAAGTGAAG
LVR01_0026_B11.b : TGGACAGCTTGAAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCAAAAGTGAAG


20080515C-010635 : AAGTAGAGAAAGTGGTGGAGACCATCCGCTCGAGCTTGCAGGACCCTGAGAAAGGCTTGT
                   ---------+---------+---------+---------+---------+---------+ 638
LVRM1_0109_C11.b : AAGTAGACAAAGTGGTGGAGACCATCCGCCCGAGCTTGCAGGACCCTGAGAAAGGCTCGT
LVR01_0026_B11.b : AAGTAGAGAAAGTGGTGGAGACCATCCGCTCGAGCTTGCAGGACCCTGAGAAAGGCTTGT


20080515C-010635 : GGGGCCTGGTTAACAATGCAGGCATCTCAACGTTCGGGGACGTGGAATTCACCAGCATGG
                   ---------+---------+---------+---------+---------+---------+ 698
LVRM1_0109_C11.b : GGGGCCTGGTTAACATTGCATGCATCTCAACGTTCGGGGACGTGGCATTCACCACCATGG
LVR01_0026_B11.b : GGGGCCTGGTTAACAATGCAGGCATCTCAACGTTCGGGGACGTGGAATTCACCAGCATGG


20080515C-010635 : AGACCTACAAGGAGGTGGCAGAAGTGAACCTCTGGGGCACGGTGCGGGTGACAAAATCCT
                   ---------+---------+---------+---------+---------+---------+ 758
LVRM1_0109_C11.b : AGATCTACAAA*ATGTGGCAGAAGTGATCCTCTGGGGCACAGTGCAGGTGACAAAATCtt
LVR01_0026_B11.b : AGACCTACAAGGAGGTGGCAGAAGTGAACCTCTGGGGCACGGTGCGGGTGACAAAATCCT


20080515C-010635 : TTCTCCCTCTCATCCGGAGGGCCAAAGATTTCCAAGAAACAACAACCTCAAAATGTCCAA
                   ---------+---------+---------+---------+---------+---------+ 818
LVRM1_0109_C11.b : t                                                          
LVR01_0026_B11.b : TTCTCCCTCTCATCCGGAGGGCCAAAGATTTCCAAGAAACAACAACCTCAAAATGTCCAA


20080515C-010635 : GTCATCAAGGACCCCATCTGGACGGGAAAGCTTGGTACTGCTCGCTGTTTTACTACCCAG
                   ---------+---------+---------+---------+---------+---------+ 878
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : GTCATCAAGGACCCCATCTGGAcgggaaagcttggtactgctcgctgttttactacccag


20080515C-010635 : TTCCCTTGTCACCTGGGCAAGTCCCTTCTCCATTTTCCACCTCACTCTCCTCATTTAAAA
                   ---------+---------+---------+---------+---------+---------+ 938
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : ttcccttgtcacctgggcaagtcccttctccattttccacctcactctcctcatttaaaa


20080515C-010635 : ATAGCAGTAATGACAACAATCATAACCATTCCTAACACGCTGTGA...............
                   ---------+---------+---------+---------+---------+---------+ 983
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : atAGCAGTAATGACAACAATCATAACCATTCCTAACACGCTGTGAcccaggcagaacatg


20080515C-010635 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 983
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : ctctaaaaccactgcctgcttaatttcttacaccccttttaagggaaacagcagttattt


20080515C-010635 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 983
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : tttatttccgggaaaaaccccaaaaacaccccaagggtttttttcatttttgccccccaa


20080515C-010635 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 983
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : gggttccccccccccaaccaaaaaagttctaaaaaaatgggaagaaaaaaaacttttttt


20080515C-010635 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 983
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : aaaaaaaaaaaaacaaaaaccccc