[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20101001C-004102
Length:
880
Sequence:
[FASTA format sequence]
CTCACTGCTC TTCTGCTCCC TGAAACTCAG CTGCCAGGGG AGCCGGGGCT GCCCTACGAA
GCCGTCCCCT CCATACTGGA CCCCTACAGG GAGCCACGTG TGCCCAGCGG GGGCACCGCC
CCAGCTGATG CCCCAGAGGG GCCACCCATC TCAAGAGGGG CTCCGGGTCC TGCCTGGCCT
CCTCATGGCA CATGAGCCAG AGCCTGAGGC TGATGGGTTA CTGGACCTCA GCTTCCTGAC
GGAGGAGGAA CAGGAAGCCA TTGCTGAGGT CCTGAAGCGA GATGCCCACC TACGGCAGCT
GGAGGAGGGA CGGGTCAGAA AGCTCCGGGC ATCACTGGAA GACCCTGGGC AGCTGAAGAT
CCTAACAGGG GACTGGTTCC AGGAAGCACG CTCCCAGAGG CACCACCACA CCCACCTGGG
TTCTGACCTA GTCCGAGCCT CCATCCGCAG AAAGAAGGGC TCCAGGGGAG ACCAGGCTCG
GGGCAGCAAT GGGGAGGCTG AGGCTGCTGG GAAAGAGACC GAAGAGGCGC TGGAGCCCAG
GCTCCCCATA GACAAGGCCC CCCAAGAGAG TCTCAGCGAG GCTGAGGGAC CTGATTTCCC
CTCACCATAT GTCCCCACTA AGGCATCAGA TAATGAAGAG GAGCCCCCGG CCCAGGAAGC
GCCTGGGCCG GCGGACGTTC AGGTCCCAGC CGCGGAGGAG GCGGACCCGG AGCCAAAGCC
GCCGTCGGGG GCGGAGGAGG AGCCGCAGCC CAGGCCTGCT CAGACCCAGG AGGCGTCCGA
AATCCTGGGA GAATGGGGAG GAGGCCCCGG GCCTGACCCC TCACTGGACC GTATGCTCAG
CACCAGCTCC TCCCATGTCA GCCCTCACTC CTCCACGCTG
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | SYTL1 | PREDICTED: synaptotagmin-like protein 1-like isoform 1 [Sus scrofa]. | 367 | e-102 | O |
|
| SYTL1 | PREDICTED: synaptotagmin-like protein 1-like isoform 2 [Sus scrofa]. | 331 | 2e-91 | O |
|
| LOC100516923 | PREDICTED: synaptotagmin-like protein 2-like [Sus scrofa]. | 90.1 | 1e-18 | O |
|
| EXPH5 | PREDICTED: exophilin-5-like [Sus scrofa]. | 50.4 | 1e-06 | O |
|
20101001C-004102 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVR01_0048_B04.b : gggggtttttttagcattggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0039_H04.b : gagttgtcxxxxxxxxxxxxxxxxxx
SMG01_0063_B05.b : ncccttgttnnnnggactaacagctgga
SMG01_0042_A03.b : nnnncccctgtaaaa
20101001C-004102 : .................................CTCACTGCTCTTCTGCTCCCTGAAACT
---------+---------+---------+---------+---------+---------+ 27
LVR01_0048_B04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCACTGCTCTTCTGCTCCCTGAAACT
LVRM1_0039_H04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtaCTGCTCTTCTGCTCCCTGAAACT
SMG01_0063_B05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGCTCTTCTGCCCCCTGAAACT
SMG01_0042_A03.b : cagataaacaggcgtgtacggtxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtttcct
20101001C-004102 : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
---------+---------+---------+---------+---------+---------+ 87
LVR01_0048_B04.b : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
LVRM1_0039_H04.b : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
SMG01_0063_B05.b : CAGCTGCCAGGGGAGCTGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
SMG01_0042_A03.b : tccgtcataaaagggtacctggtctgctttgcagcacttggccccctctgaggagacccC
20101001C-004102 : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
---------+---------+---------+---------+---------+---------+ 147
LVR01_0048_B04.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
LVRM1_0039_H04.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
SMG01_0063_B05.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
SMG01_0042_A03.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
20101001C-004102 : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
---------+---------+---------+---------+---------+---------+ 207
LVR01_0048_B04.b : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
LVRM1_0039_H04.b : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
SMG01_0063_B05.b : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
SMG01_0042_A03.b : CTCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
20101001C-004102 : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
---------+---------+---------+---------+---------+---------+ 267
LVR01_0048_B04.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
LVRM1_0039_H04.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
SMG01_0063_B05.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
SMG01_0042_A03.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
20101001C-004102 : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
---------+---------+---------+---------+---------+---------+ 327
LVR01_0048_B04.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
LVRM1_0039_H04.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
SMG01_0063_B05.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
SMG01_0042_A03.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAAGAGGGACGGGTCAGAAAGCTCCG
20101001C-004102 : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
---------+---------+---------+---------+---------+---------+ 387
LVR01_0048_B04.b : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
LVRM1_0039_H04.b : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
SMG01_0063_B05.b : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
SMG01_0042_A03.b : GGCATCACTGGAAGACCCTGGGCAGCTGAATATCCTAACAGGGGACTGGTTCCAGGAAGC
20101001C-004102 : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
---------+---------+---------+---------+---------+---------+ 447
LVR01_0048_B04.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
LVRM1_0039_H04.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
SMG01_0063_B05.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
SMG01_0042_A03.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
20101001C-004102 : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
---------+---------+---------+---------+---------+---------+ 507
LVR01_0048_B04.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
LVRM1_0039_H04.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
SMG01_0063_B05.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
SMG01_0042_A03.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGACGCTGC
20101001C-004102 : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
---------+---------+---------+---------+---------+---------+ 567
LVR01_0048_B04.b : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
LVRM1_0039_H04.b : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
SMG01_0063_B05.b : TGGGAAAGAGACCGAAGAGGTGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
SMG01_0042_A03.b : TGGGAAAGAGACCGAAGAGGTGCTGGAGCCCAGGCTCCACATAGACAAGGCCCCCCAAGA
20101001C-004102 : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
---------+---------+---------+---------+---------+---------+ 627
LVR01_0048_B04.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
LVRM1_0039_H04.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
SMG01_0063_B05.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
SMG01_0042_A03.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
20101001C-004102 : AGATAATGAAGAGGAGCCCCCGGCCCAGGAAGCGCCTGGGCCGGCGGACGTTCAGGTCCC
---------+---------+---------+---------+---------+---------+ 687
LVR01_0048_B04.b : AGATAATGAAGAGGAGCCCCCGGCCCAGGAAGCGCCTGGGCCGGCGGACGTTCAGGTCCC
LVRM1_0039_H04.b : AGATAATGAAGAGGAGCCCCCGGCCCAGGTAGCGCCTGGGCCGGCGGACGTTCAAGTCCC
SMG01_0063_B05.b : AGATAATGAAGAGGAGCCCCCGGCCCAGGAAGCGCCTGGGCCGGCGGACGTTCAGGTCCC
SMG01_0042_A03.b : AGATAATGAAGAAGAGCCCCCGGCCCAAGAAGCGCCTGGGGCGGCGGACGTTCAGGTCCC
20101001C-004102 : AGCCGCGGAGGAGGCGGACCCGGAGCCAAAGCCGCCGTCGGGGGCGGAGGAGGAGCCGCA
---------+---------+---------+---------+---------+---------+ 747
LVR01_0048_B04.b : AGCCGCGGAGGAGGCGGACCCGGAGCCAAAGCCGCCGTCGGGGGCGGAGGAGGAGCCGCA
LVRM1_0039_H04.b : AGCCGCGGAGGAGGCGGACCCGGAGCC*AAGCCGCCGTCGGGGGCGGAG
SMG01_0063_B05.b : AGCCGCGGAGGAGGCGGACCCGGAGCCTAAGCCGCCGTCGGGGGCGGAGGAGGAGCCGCA
SMG01_0042_A03.b : AGCCGCGGAGGAGGCAGACCGGGAGCCtagccgccctcgggggcgaaggaagaacccaac
20101001C-004102 : GCCCAGGCCTGCTCAGACCCAGGAGGCGTCCGAAATCCTGGGAGAATGGGGAGGAGGCCC
---------+---------+---------+---------+---------+---------+ 807
LVR01_0048_B04.b : ACCCAGGCCTGCTCAGACCCAGGAGGCGTCCGAAATCCTGGGAGAATGGGGAGGAGGCCC
LVRM1_0039_H04.b :
SMG01_0063_B05.b : GCCCAGGCCTGCTCAGACCCAGGAGGCGTCCGAGATCCTGG*AGAATGGGGAGGAGGCCC
SMG01_0042_A03.b : ccaagcctgctcaaacccaggagcctccgaattctgaaaagggggaaagaagcccggggc
20101001C-004102 : CGGG*CCTGACCCCTCACTGGACCGTATGCTCAGCACCAGCTCCTCCCATGTCAGCCCTC
---------+---------+---------+---------+---------+---------+ 866
LVR01_0048_B04.b : CGGGGCCTGACCCCTCACTGGACCGTATGCTCAGCACCAGCTCCctcatggtccagcctc
LVRM1_0039_H04.b :
SMG01_0063_B05.b : CGGG*CCCGACCCCTCACTGGNACGTATGCTCAGCAGCAGCTCCTCCCATGTCAGCCCTC
SMG01_0042_A03.b : ccgaccccttctgggacgtattgctaaaagaacctctccttgtcaggctaaattctccac
20101001C-004102 : ACTCCTCCACGCTG..............................................
---------+---------+---------+---------+---------+---------+ 880
LVR01_0048_B04.b : aactcctccacgcttgagcggcagccagatgagccctgtcgggggaagcggaaggcggcg
LVRM1_0039_H04.b :
SMG01_0063_B05.b : ACTCCTCCACGCTGagcggcaaccagatgaacctgtcggggaangcggaagcnggcgnca
SMG01_0042_A03.b : cctaaagggcaccaaaataacccgttgggggagggggaggggccccattttaggtgcccg
20101001C-004102 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
LVR01_0048_B04.b : gcagtgcaggtgcgccgcctcccttgcacttcgccgctgccctacgagccctggcgcccg
LVRM1_0039_H04.b :
SMG01_0063_B05.b : atgcaagtgcccggctccgtgcacttcgcgctgcactatcaacctggggccccgaactgc
SMG01_0042_A03.b : ccttctttttttcgcgggaaaaaaaaacgggccccagaatttccttggctttaataattc
20101001C-004102 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
LVR01_0048_B04.b : ccgaaccttcccggtgcccctgaatcccattgcccaggggcctggcccgccccccccccc
LVRM1_0039_H04.b :
SMG01_0063_B05.b : ccctgcacttgattcattgcaagggctggccgccgccgccgcccccctaaaaccctagtt
SMG01_0042_A03.b : cgggggttggccccccccccccccccttaaaacttatttaaaaaactccccccgaaaaga
20101001C-004102 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
LVR01_0048_B04.b : cccccccccgccttcaaaaccc
LVRM1_0039_H04.b :
SMG01_0063_B05.b : aaaagtactcctcccgaaaaccaacaagcccaaacaacgtggaaaaggatttgaaccaat
SMG01_0042_A03.b : aaaacggccaaaaaaaggtgaaaaaggaattgaccctttttttaaaatctcgtgtttttc
20101001C-004102 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
LVR01_0048_B04.b :
LVRM1_0039_H04.b :
SMG01_0063_B05.b : cttacgaaactctcgtattttccccagggaacttccggcggggtgtaccatcgggggacc
SMG01_0042_A03.b : ccggggaaacccgggggggtgtgtacaaatgggggcccaaaaatgtgggaaatttttggg
20101001C-004102 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
LVR01_0048_B04.b :
LVRM1_0039_H04.b :
SMG01_0063_B05.b : aaaaaccggtccaatatttttgggaaataaagccctgaaccgaaatgaatcaaccctgtt
SMG01_0042_A03.b : aaaaaaaatcccgaaaaaaaaaaaaaacaacttttcctccgagagagcgccgccaaaaat
20101001C-004102 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
LVR01_0048_B04.b :
LVRM1_0039_H04.b :
SMG01_0063_B05.b : ccctgacaaggcccgttccatacttcccggggttttttcctaaattccccggcagaggaa
SMG01_0042_A03.b : actccgggtgttttttttattattcggcggagg
20101001C-004102 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
LVR01_0048_B04.b :
LVRM1_0039_H04.b :
SMG01_0063_B05.b : actacaggggctcttggggaggaaaatcctccccaattaaataaagttttgaaccccccc
SMG01_0042_A03.b :
20101001C-004102 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
LVR01_0048_B04.b :
LVRM1_0039_H04.b :
SMG01_0063_B05.b : aagagccccccatcccttatttntannnttcttgaannnngnaccannnntggaaaaatg
SMG01_0042_A03.b :
20101001C-004102 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
LVR01_0048_B04.b :
LVRM1_0039_H04.b :
SMG01_0063_B05.b : ggtggctctttcaat
SMG01_0042_A03.b :
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