[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20101001C-004330
Length:
919
Sequence:
[FASTA format sequence]
GGTGCGCAGC AGCGTCATGG CGCGCTTCTT CCGCGCGGGC CCGGGCTTAC CCTTCCGAGA
GGTGCTCTCG CGGGCAGTGT GGGGTCGTGC CGACAATGGC GGCCTCAGCC CGAAGGTCGG
AACCGGAGAC GCAGGGTCCC TTACAAAGCG TGAGCCGTTC CTCTCCAAGA GTGAGTGGCA
AAAGAAGCTG ACTCCAGAGC AATTCCACGT CACGAGAGAA AAAGGGACAG AACCGCCTTT
CAGTGGGACC TACCTGAATA ACAAGGAAGC AGGAATGTAT CACTGTGTGT GCTGTGACAG
CCCACTCTTC AGCTCTGAGA AAAAGTACTG CTCTGGCACT GGATGGCCTT CATTTTCTGA
GGCTCACGGC ACATCTGGCT CTGATGAGAG TGACACAGGG ATCCTGAGAC GTGTGGACAC
CTCGCTGGGA ACAGCTCGCA CGGAGGTTGT CTGCAAGCAG TGCGAAGCTC ACCTTGGCCA
TGTGTTTCCT GATGGACCTG GGCCTACAGG TCAGAGGTTT TGCATCAACA GTGTGGCACT
CAAGTTCAAA CCAAGGAAAC ACTGACCATC GCCAGGAGTC CCTTTCTCTT CCACCCTCTC
ATTTCCAAAC TCGATTTTCA TAATTTATGC AAATGACTAG TTTTATTAAT GACCAAACTA
GGCTAAGCTT GCTGGCATAC CTTCTCTAAT TCATTACCTG GAGTCAGCTC CACCCTGGCT
CTGGCTCTGA CTAGAATTTC ACGGAATGAC AGAGGGGCAG TCCTTTCCCT TAAATCAACA
TCTGTGGGCT TTGCCAGGAC CAGAGGGCAT GACTCTTTGG GGACATTAGG AGGCTGATGG
ATAAGCCAAA GAACTCCTAT AAAACTATGC TGAATTTTCA TTGCAGTCAA GTGTTTCACA
GACATGTATA GGTGAGAGG
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | LOC100520263 | "PREDICTED: methionine-R-sulfoxide reductase B2, mitochondrial-like [Sus scrofa]. " | 389 | e-108 | O |
|
| LOC100511693 | "PREDICTED: methionine-R-sulfoxide reductase B3, mitochondrial-like [Sus scrofa]. " | 64.3 | 8e-11 | O |
|
| LOC100512103 | "PREDICTED: methionine-R-sulfoxide reductase B3, mitochondrial-like [Sus scrofa]. " | 62.8 | 2e-10 | O |
|
| SEPX1 | methionine-R-sulfoxide reductase B1 [Sus scrofa]. | 56.6 | 2e-08 | O |
|
20101001C-004330 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
HTMT1_0046_H11.b : tttttggacggtagaggccgtaxxxxxxxxxxxxxxxxx
TCH01_0043_A11.b : tttttggctagtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0027_F12.b : ggggcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20101001C-004330 : .....................GGTGCGCAGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
---------+---------+---------+---------+---------+---------+ 39
HTMT1_0046_H11.b : xxxxxxxxxxxxxxxxxxxxxGGTGCGCAGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
TCH01_0043_A11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
OVR01_0027_F12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
20101001C-004330 : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
---------+---------+---------+---------+---------+---------+ 99
HTMT1_0046_H11.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
TCH01_0043_A11.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
OVR01_0027_F12.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
20101001C-004330 : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
---------+---------+---------+---------+---------+---------+ 159
HTMT1_0046_H11.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
TCH01_0043_A11.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
OVR01_0027_F12.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
20101001C-004330 : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA
---------+---------+---------+---------+---------+---------+ 219
HTMT1_0046_H11.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA
TCH01_0043_A11.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA
OVR01_0027_F12.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCGATTCCACGTCACGAGAGA
20101001C-004330 : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
---------+---------+---------+---------+---------+---------+ 279
HTMT1_0046_H11.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
TCH01_0043_A11.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
OVR01_0027_F12.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
20101001C-004330 : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
---------+---------+---------+---------+---------+---------+ 339
HTMT1_0046_H11.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
TCH01_0043_A11.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
OVR01_0027_F12.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
20101001C-004330 : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
---------+---------+---------+---------+---------+---------+ 399
HTMT1_0046_H11.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
TCH01_0043_A11.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
OVR01_0027_F12.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
20101001C-004330 : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
---------+---------+---------+---------+---------+---------+ 459
HTMT1_0046_H11.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
TCH01_0043_A11.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
OVR01_0027_F12.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
20101001C-004330 : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
---------+---------+---------+---------+---------+---------+ 519
HTMT1_0046_H11.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
TCH01_0043_A11.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
OVR01_0027_F12.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
20101001C-004330 : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
---------+---------+---------+---------+---------+---------+ 579
HTMT1_0046_H11.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
TCH01_0043_A11.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
OVR01_0027_F12.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
20101001C-004330 : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
---------+---------+---------+---------+---------+---------+ 639
HTMT1_0046_H11.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
TCH01_0043_A11.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
OVR01_0027_F12.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
20101001C-004330 : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
---------+---------+---------+---------+---------+---------+ 699
HTMT1_0046_H11.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
TCH01_0043_A11.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
OVR01_0027_F12.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
20101001C-004330 : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAATTTCACGGAATGACAGAGGGGCA
---------+---------+---------+---------+---------+---------+ 759
HTMT1_0046_H11.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAATTTCACGGAATGACAGAGGGGCA
TCH01_0043_A11.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGGCTAGAATTTCACGGAATGACAGAGGGGCA
OVR01_0027_F12.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAATTTCACGGAATGACAGAGGGGCA
20101001C-004330 : GTCCTTTCCCTTAAATCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTCT*
---------+---------+---------+---------+---------+---------+ 816
HTMT1_0046_H11.b : GTCCTTTCCCTTAAATCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTCT*
TCH01_0043_A11.b : GTCCTTTCCCTTAA*TCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTCT*
OVR01_0027_F12.b : GTCCTTTCCCTTAAATCAACATCTGTGGGCTTTTGCCCAGGACCAGAGGGCATGACTCTT
20101001C-004330 : TTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
---------+---------+---------+---------+---------+---------+ 876
HTMT1_0046_H11.b : TTGGGGACATTTAGGAGCTGATGGATNAGCCAAAGAACTCCTATAAAACTATGCTGAATT
TCH01_0043_A11.b : TTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
OVR01_0027_F12.b : TTGGGGACATTANGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
20101001C-004330 : TTC*ATTGCAGTCAAGTGTTTCACAGACATGTATAGGTGAGAGG................
---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : TTC*ATTGCAGTCAAGTGTTTCACAGACATGTATAGGTGAGAGGgtcaacgagaagagga
TCH01_0043_A11.b : TTCcattgcagtcaagtggttcacagacatgtataggtgagagggtcaacgagaagaggg
OVR01_0027_F12.b : TTCCATTGCAgtcaagtgtttcacaaacttgtataggtgagaaggtcaaacgaaaagagg
20101001C-004330 : ............................................................
---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : atggaaatacggggatgaggatgatccaccagtccagtgtggaaaaaggcaataagaggc
TCH01_0043_A11.b : atgaaaatacgggatgaggatgatccaccgtcccagtgtggaaaagcaataaggaggcag
OVR01_0027_F12.b : aatgaaaatacgggatgaagattatccacagtcccagtggtgaaaaaggcaattaaggag
20101001C-004330 : ............................................................
---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : aggttgtggacaancgcnttttgggaaggcacttgtggggaatcacgggatgcaggaaaa
TCH01_0043_A11.b : gtttgtggaccacctgcttttgggaaggccatggtggggatcccggggaagcaggaaatt
OVR01_0027_F12.b : ggagggtttggggaccaaacttgcgttttgggggagggcccattgtggggggatcccccg
20101001C-004330 : ............................................................
---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : ttttccacaaaccttaaactggcttggaaattttaattcaaaccttcttactggcactaa
TCH01_0043_A11.b : tttccaaaacctttaacggtcttaaaattcaattccacctctctaccgcaactattttaa
OVR01_0027_F12.b : gggaaatgccggggaaaattttttttccccaaaaac
20101001C-004330 : ............................................................
---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : ttttcaggggggtttggtaacttttgggaaaagaaacacagggggccacaaattaacttt
TCH01_0043_A11.b : ggggcgttgtaaaccttaggaaaagaaaacaagggctcaaaagttacctttaaaggtcaa
OVR01_0027_F12.b :
20101001C-004330 : ............................................................
---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : taagggttcaaaaaaaattaattttggggnnnnnnngnnnnngaggaaagagaaaaaaca
TCH01_0043_A11.b : taaa
OVR01_0027_F12.b :
20101001C-004330 : ............................................................
---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : aacaagcca
TCH01_0043_A11.b :
OVR01_0027_F12.b :
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