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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20101001C-006352

Length: 982

Sequence:  [FASTA format sequence]
CGGCTCTTGA GTCACCCCCC GCGCAGCCTT GTTCTGGCGT GAGAGCCGGA GGCAGTCCTT
CCCCGCTCAG CTTTGTGGTG TTTGTGATCC TTATCCTTTA AGATGCCTGA GGAAGTGCAC
CATGGCGAGG AGGAAGTGGA GACTTTTGCC TTCCAGGCAG AAATCGCCCA GCTCATGTCT
CTCATCATCA ATACCTTTTA TTCCAACAAG GAGATTTTTC TTCGGGAGTT GATCAGTAAT
GCTTCTGATG CCTTGGACAA GATTCGCTAT GAGAGCCTGA CAGACCCTTC CAAATTGGAC
AGTGGTAAAG AGCTGAAAAT TGACATCATC CCCAACCCCC AGGAGCGCAC CCTGACTCTG
GTAGACACAG GCATTGGCAT GACCAAAGCT GATCTCATAA ATAATTTGGG AACCATTGCC
AAGTCTGGTA CTAAAGCATT TATGGAGGCT CTTCAGGCTG GTGCAGACAT CTCCATGATT
GGACAGTTTG GTGTTGGCTT CTATTCTGCC TACCTGGTGG CAGAGAAAGT GGTTGTGATC
ACAAAGCACA ATGATGATGA ACAGTATGCC TGGGAGTCTT CTGCTGGGGG CTCCTTCACA
GTTCGTGCTG ACCATGGTGA GCCCATTGGC CGAGGTACCA AGGTCATTCT GCATCTTTAG
GAGGACCAGA CAGAATACTT AGAAGAGAGA CGGGTGAAAG AGGTGGTAAA GAAGCACTCA
CAGTTCATAG GTTATCCCAT CACACTTTAT CTGGAGAAGG AAACGTGAGA AGAAATCAGT
GATGATGAGG CAGAGGAAGA GAAAGGGTGA TAAGAGGAGG AAAGATAAGA TGATGAGGAG
AAGCCCCAGA TTTGAGATGT GGGCTCAGAA TGAGAGGATG ATNGTGGGCA AGATAGAAAA
AGAAGACAAA AAGATCAGGG AGAAGTATAT TGATCANGGA GAAAACTGAC AGACCAGCCC
ATCTGGACCA GNAACCTGAT GA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20101001C-006352 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
ADR01_0084_A02.b : nttaaaaagatttnnnggacaacagctggtxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PTG01_0108_D08.b :                  nnnggtcttttnnnnnngggtaaagcagcggntcggntccxxx


20101001C-006352 : ..CGGCTCTTGAGTCACCCCCCGCGCAGCCTTGTTCTGGCGTGAGAGCCGGAGGCAGTCC
                   ---------+---------+---------+---------+---------+---------+ 58
ADR01_0084_A02.b : xxCGGCTCTTGAGTCACCCCCCGCGCAGCCTTGTTCTGGCGTGAGAGCCGGAGGCAGTCC
PTG01_0108_D08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxGCCTTGTTCTGGCGTGAGAGCCGGAGGCAGTCC


20101001C-006352 : TTCCCCGCTCAGCTTTGTGGTGTTTGTGATCCTTATCCTTTAAGATGCCTGAGGAAGTGC
                   ---------+---------+---------+---------+---------+---------+ 118
ADR01_0084_A02.b : TTCCCCGCTCAGCTTTGTGGTGTTTGTGATCCTTATCCTTTAAGATGCCTGAGGAAGTGC
PTG01_0108_D08.b : TTCCCCGCTCAGCTTTGTGGTGTTTGTGATCCTTATCCTTTAAGATGCCTGAGGAAGTGC


20101001C-006352 : ACCATGGCGAGGAGGAAGTGGAGACTTTTGCCTTCCAGGCAGAAATCGCCCAGCTCATGT
                   ---------+---------+---------+---------+---------+---------+ 178
ADR01_0084_A02.b : ACCATGGCGAGGAGGAAGTGGAGACTTTTGCCTTCCAGGCAGAAATCGCCCAGCTCATGT
PTG01_0108_D08.b : ACCATGGCGAGGAGGAAGTGGAGACTTTTGCCTTCCAGGCAGAAATCGCCCAGCTCATGT


20101001C-006352 : CTCTCATCATCAATACCTTTTATTCCAACAAGGAGATTTTTCTTCGGGAGTTGATCAGTA
                   ---------+---------+---------+---------+---------+---------+ 238
ADR01_0084_A02.b : CTCTCATCATCAATACCTTTTATTCCAACAAGGAGATTTTTCTTCGGGAGTTGATCAGTA
PTG01_0108_D08.b : CTCTCATCATCAATACCTTTTATTCCAACAAGGAGATTTTTCTTCGGGAGTTGATCAGTA


20101001C-006352 : ATGCTTCTGATGCCTTGGACAAGATTCGCTATGAGAGCCTGACAGACCCTTCCAAATTGG
                   ---------+---------+---------+---------+---------+---------+ 298
ADR01_0084_A02.b : ATGCTTCTGATGCCTTGGACAAGATTCGCTATGAGAGCCTGACAGACCCTTCCAAATTGG
PTG01_0108_D08.b : ATGCTTCTGATGCCTTGGACAAGATTCGCTATGAGAGCCTGACAGACCCTTCCAAATTGG


20101001C-006352 : ACAGTGGTAAAGAGCTGAAAATTGACATCATCCCCAACCCCCAGGAGCGCACCCTGACTC
                   ---------+---------+---------+---------+---------+---------+ 358
ADR01_0084_A02.b : ACAGTGGTAAAGAGCTGAAAATTGACATCATCCCCAACCCCCAGGAGCGCACCCTGACTC
PTG01_0108_D08.b : ACAGTGGTAAAGAGCTGAAAATTGACATCATCCCCAACCCCCAGGAGCGCACCCTGACTC


20101001C-006352 : TGGTAGACACAGGCATTGGCATGACCAAAGCTGATCTCATAAATAATTTGGGAACCATTG
                   ---------+---------+---------+---------+---------+---------+ 418
ADR01_0084_A02.b : TGGTAGACACAGGCATTGGCATGACCAAAGCTGATCTCATAAATAATTTGGGAACCATTG
PTG01_0108_D08.b : TGGTAGACACAGGCATTGGCATGACCAAAGCTGATCTCATAAATAATTTGGGAACCATTG


20101001C-006352 : CCAAGTCTGGTACTAAAGCATTTATGGAGGCTCTTCAGGCTGGTGCAGACATCTCCATGA
                   ---------+---------+---------+---------+---------+---------+ 478
ADR01_0084_A02.b : CCAAGTCTGGTACTAAAGCATTTATGGAGGCTCTTCAGGCTGGTGCAGACATCTCCATGA
PTG01_0108_D08.b : CCAAGTCTGGTACTAAAGCATTTATGGAGGCTCTTCAGGCTGGTGCAGACATCTCCATGA


20101001C-006352 : TTGGACAGTTTGGTGTTGGCTTCTATTCTGCCTACCTGGTGGCAGAGAAAGTGGTTGTGA
                   ---------+---------+---------+---------+---------+---------+ 538
ADR01_0084_A02.b : TTGGACAGTTTGGTGTTGGCTTCTATTCTGCCTACCTGGTGGCAGAGAAAGTGGTTGTGA
PTG01_0108_D08.b : TTGGACAGTTTGGTGTTGGCTTCTATTCTGCCTACCTGGTGGCAGAGAAAGTGGTTGTGA


20101001C-006352 : TCACAAAGCACAATGATGATGAACAGTATGCCTGGGAGTCTTCTGCTGGGGGCTCCTTCA
                   ---------+---------+---------+---------+---------+---------+ 598
ADR01_0084_A02.b : TCACAAAGCACAATGATGATGAACAGTATGCCTGGGAGTCTTCTGCTGGGGGCTCCTTCA
PTG01_0108_D08.b : TCACAAAGCACAATGATGATGAACAGTATGCCTGGGAGTCTTCTGCTGGGGGCTCCTTCA


20101001C-006352 : CAGTTCGTGCTGACCATGGTGAGCCCATTGGCCGAGGTACCAAGGTCATTCTGCATCTTT
                   ---------+---------+---------+---------+---------+---------+ 658
ADR01_0084_A02.b : CAGTTCGTGCTGACCATGGTGAGCCCATTGGCCGAGGTACCAAGGTCATTCTGCATCTTT
PTG01_0108_D08.b : CAGTTCGTGCTGACCATGGTGAGCCCATTGGCCGAGGTACCAAGGTCATTCTGCATNCTT


20101001C-006352 : AGGAGGACCAGACAGAATACTT*AGAAGAGAGACGGGTGAAAGAGGTGGTAAAGAAGCAC
                   ---------+---------+---------+---------+---------+---------+ 717
ADR01_0084_A02.b : AGGAGGACCAGACAGAATACTT*AGAAGAGAGACGGGTGAAAGAGGTGGTAAAGAAGCAC
PTG01_0108_D08.b : ANGAGGACCAGACCGAATACTTTAAAAGAGAGACGGGTGAAAGAAGTtggtaagaaagcc


20101001C-006352 : TCACAGTTCATAGGTTATCCCATCACACTTTATCTGGAGAAGGAAACGTGAGAAGAAATC
                   ---------+---------+---------+---------+---------+---------+ 777
ADR01_0084_A02.b : TCACAGTTCATAGGTTATCCCATCACACTTTATCTGGAGAAGGAAACGTGAGAAGAAATC
PTG01_0108_D08.b : ctcccaggtcctaaggtatccccntcacacttatctggagaaaggacgtgaaaaaaaaat


20101001C-006352 : AGTGATGATGAGGCAGAGGAAGAGAAAGGGTGATAAGAGGAGGAAAGATAAGATGATGAG
                   ---------+---------+---------+---------+---------+---------+ 837
ADR01_0084_A02.b : AGTGATGATGAGGCAGAGGAAGAGAAAGGGTGATAAGAGGAGGAAAGATAAGATGATGAG
PTG01_0108_D08.b : ccttgttgataaggccaagaaaaaaaaagtgtttagggggaggaaaattaggatgtttgg


20101001C-006352 : GAGAAGCCCCAGATTTGAGATGTGGGCTCAGAATGAGAGGATGATNGTGGGCAAGATAGA
                   ---------+---------+---------+---------+---------+---------+ 897
ADR01_0084_A02.b : GAGAAGCCCCAGATTTGAGATGTGGGCTCAGAATGAGAGGATGATNGTGGGCAAGATAGA
PTG01_0108_D08.b : ggaaacccccnaatttgaaattggggcctccattaagaggaaaaaatgggcaaaattttt


20101001C-006352 : AAAAGAAGACAAAAAGATCAGGGAGAAGTATATTGATCANGGAGAAAACTGACAGACCAG
                   ---------+---------+---------+---------+---------+---------+ 957
ADR01_0084_A02.b : AAAAGAAGACAAAAAGATCAGGGAGAAGTATATTGATCANGGAGAAAACTGACAGACCAG
PTG01_0108_D08.b : aaaaagaaacccccaatgttccgggggaaatttttttgtttggggaaaatttaaaaaaac


20101001C-006352 : CCCATCTGGACCAGNAACCTGATGA...................................
                   ---------+---------+---------+---------+---------+---------+ 982
ADR01_0084_A02.b : CCCATCTGGACCAGNAACCTGATGAcataccccagaggaatatgagagtctacaaagcct
PTG01_0108_D08.b : ccaacccctttgggacgagaaccctttttaaatcccccccgggggaaattgggaagtttc


20101001C-006352 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 982
ADR01_0084_A02.b : gaccatgactggaagatcactggcagtaagcacttcctgtagaagtcagttgaattcaag
PTG01_0108_D08.b : caaaaaccctaaacagagggggggaaaaaaccccggggntaaacccttttttgttaagag


20101001C-006352 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 982
ADR01_0084_A02.b : catgctgttcatccccgtcgggctctttggactttttgaaacaaaagaaaagacaacttc
PTG01_0108_D08.b : ggcttgggtataaaaaatttgttttttcccccccgcgggggcctttttttccttttttaa


20101001C-006352 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 982
ADR01_0084_A02.b : aactacctttccgggggttccatgacacctcaatgacgaaccaaataccaccttttcccg
PTG01_0108_D08.b : aaaaaaaaaaaaacaaacccccttttttttcccccggggtttttctaggagccgggggaa


20101001C-006352 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 982
ADR01_0084_A02.b : gggggtgacttaaacctccctgaatctcccaatgtccccaaaaaaatttaggcttccaaa
PTG01_0108_D08.b : agaaaaacaaaaacaccccttccccccgggggggggatataaaaaatcccccccaccccc


20101001C-006352 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 982
ADR01_0084_A02.b : catttaaaggctgggctttggggggaaaagggaaacaatttgggtttcaa         
PTG01_0108_D08.b : ccaaaaattcccccaaaaaatattatgggtctctcccaaatttttaaaaagggcggcctt


20101001C-006352 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 982
ADR01_0084_A02.b :                                                             
PTG01_0108_D08.b : ctctctgggaaaaaaagaaaaaaaaaaataaatcgtttctcttaaaaaggttgggagagc


20101001C-006352 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 982
ADR01_0084_A02.b :                                                             
PTG01_0108_D08.b : cccacacacccccccttt