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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20101001C-006603

Length: 981

Sequence:  [FASTA format sequence]
GTCGTCCGGA AGGCGCCGCA GTGGGTGCCG GGAGAGGAAG GAAAGTCAGG AAGTAAACAT
TGACGCTCCG CTTCCTTCGT GTCCGGCTGT TTTGGGGTCA GCAACTGCGC GACTTCGTGA
CCAGAGGAGA CCGGATAACC ATGTCAGCTG CAGCTGTGGA TGCAGTTAAT GCTACCCCCA
TGTCGGGGTC CAAAGAAATG AGTTTGGAGG AACCAAAGAA GATGACCCGA GAGGACTGGA
GAAAGAAGAA GGAGCTAGAA GAACAGCGAA AATTGGGTAA TGCCCCTGCA GAAGTTGATG
AAGAAGGAAA AGACATCAAT CCTCATATCC CTCAGTATAT TTCTTCAGTG CCATGGTATA
TTGATCCATC AAAAAGACCT ACCTTAAAGC ACCAGAGACC ACAGCCAGAG AAACAGAAGC
AGTATAGCTC ATCTGGAGAA TGGTACAAGA GGGGCGTGAA AGAGAATTCC ATAACTACTA
AGTACCGCAA AGGAGCATGT GAAAACTGTG GAGCCATGAC ACACAAAAAA AAAGACTGCT
TTGAGAGACC TAGACGTGTT GGAGCAAAAT TTACAGGTAC TAATATAGCT CCAGACGAAC
ATATCCAGCC TCAGCTAATG TTTGACTACG ATGGAAAGAG GGATCGGTGG AACGGCTACA
ATCCAGAAGA ACACATGAAA ATTGTAGAAG AATATGCCAA AGTTGATCTG GCAAAACGAA
CACTGAAAGC CCAAAAACTC CAAGAAGAAT TAGCCTCAGG AAAGTTAGTG GAACAGGCTA
ATTCTCCAAA ACACCAGTGG GGAGAAAAAG AACCCAATTT CTCAACGGAA AAAGATCATA
ATAGTGAAGA TGAAGATGAA GATAAATATG CNGATGATAT TGACATGCCT GGACAGATTT
TGACCCCTAG AGACGAAATA CTGTCCGGAA TCTCAAAATC GAAAAGATAT AGCAAAATAT
TTGCGGGATT TAAGATCAAA T

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20101001C-006603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
BFLT1_0081_H05.b :                                                             
AMP01_0003_E07.b : attccgatatcaagggctxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0029_G06.b :               nnncctatctaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0001_D10.b :     gtatgtataxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRT1_0145_A02.b :                                                             


20101001C-006603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
BFLT1_0081_H05.b :       ntttccgtcagcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0003_E07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0029_G06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0001_D10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRT1_0145_A02.b :                                                             


20101001C-006603 : .................GTCGTCCGGAAGGCGCCGCAGTGGGTGCCGGGAGAGGAAGGAA
                   ---------+---------+---------+---------+---------+---------+ 43
BFLT1_0081_H05.b : xxxxxxxxxxxxxxxxxGTCGTCCGGAAGGCGCCGCAGTGGGTGCCGGGAGAGGAAGGAA
AMP01_0003_E07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCCGGGAGAGGAAGGAA
DCI01_0029_G06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGAAGGAA
AMP01_0001_D10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGGAA
OVRT1_0145_A02.b :    nnnnnccgttagcgtaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20101001C-006603 : AGTCAGGAAGTAAACATTGACGCTCCGCTTCCTTCGTGTCCGGCTGTTTTGGGGTCAGCA
                   ---------+---------+---------+---------+---------+---------+ 103
BFLT1_0081_H05.b : AGTCAGGAAGTAAACATTGACGCTCCGCTTCCTTCGTGTCCGGCTGTTTTGGGGTCAGCA
AMP01_0003_E07.b : AGTCAGGAAGTAAACATTGACGCTCCGCTTCCTTCGTGTCCGGCTGTTTTGGGGTCAGCA
DCI01_0029_G06.b : AGTCAGGAAGTAAACATTGACGCTCCGCTTCCTTCGTGTCCGGCTGCTTTGGGGTCAGCA
AMP01_0001_D10.b : AGTCAGGAAGTAAACATTGACGCTCCGCTTCCTTCGTGTCCGGCTGTTTTGGGGTCAGCA
OVRT1_0145_A02.b : xxxxxxxxxxxxxxxxTTGACGCTCCGCTTCCTTCGTGTCCGGCTGTTTTGGGGTCAGCA


20101001C-006603 : ACTGCGCGACTTCGTGACCAGAGGAGACCGGATAACCATGTCAGCTGCAGCTGTGGATGC
                   ---------+---------+---------+---------+---------+---------+ 163
BFLT1_0081_H05.b : ACTGCGCGACTTCGTGACCAGAGGAGACCGGATAACCATGTCAGCTGCAGCTGTGGATGC
AMP01_0003_E07.b : ACTGCGCGACTTCGTGACCAGAGGAGACCGGATAACCATGTCAGCTGCAGCTGTGGATGC
DCI01_0029_G06.b : ACTGCGCGACTTCGTGACCAGAGGAGACCGGATAACCATGTCAGCTGCAGCTGTGGATGC
AMP01_0001_D10.b : ACTGCGCGACTTCGTGACCAGAGGAGACCGGATAACCATGTCAGCTGCAGCTGTGGATGC
OVRT1_0145_A02.b : ACTGCGCGACTTCGTGACCAGAGGAGACCGGATAACCATGTCAGCTGCAGCTGTGGATGC


20101001C-006603 : AGTTAATGCTACCCCCATGTCGGGGTCCAAAGAAATGAGTTTGGAGGAACCAAAGAAGAT
                   ---------+---------+---------+---------+---------+---------+ 223
BFLT1_0081_H05.b : AGTTAATGCTACCCCCATGTCGGGGTCCAAAGAAATGAGTTTGGAGGAACCAAAGAAGAT
AMP01_0003_E07.b : AGTTAATGCTACCCCCATGTCGGGGTCCAAAGAAATGAGTTTGGAGGAACCAAAGAAGAT
DCI01_0029_G06.b : AGTTAATGCTACCCCCATGTCGGGGTCCAAAGAAATGAGTTTGGAGGAACCAAAGAAGAT
AMP01_0001_D10.b : AGTTAATGCTACCCCCATGTCGGGGTCCAAAGAAATGAGTTTGGAGGAACCAAAGAAGAT
OVRT1_0145_A02.b : AGTTAATGCTACCCCCATGTCGGGGTCCAAAGAAATGAGTTTGGAGGAACCAAAGAAGAT


20101001C-006603 : GACCCGAGAGGACTGGAGAAAGAAGAAGGAGCTAGAAGAACAGCGAAAATTGGGTAATGC
                   ---------+---------+---------+---------+---------+---------+ 283
BFLT1_0081_H05.b : GACCCGAGAGGACTGGAGAAAGAAGAAGGAGCTAGAAGAACAGCGAAAATTGGGTAATGC
AMP01_0003_E07.b : GACCCGAGAGGACTGGAGAAAGAAGAAGGAGCTAGAAGAACAGCGAAAATTGGGTAATGC
DCI01_0029_G06.b : GACCCGAGAGGACTGGAGAAAGAAGAAGGAGCTAGAAGAACAGCGAAAATTGGGTAATGC
AMP01_0001_D10.b : GACCCGAGAGGACTGGAGAAAGAAGAAGGAGCTAGAAGAACAGCGAAAATTGGGTAATGC
OVRT1_0145_A02.b : GACCCGAGAGGACTGGAGAAAGAAGAAGGAGCTAGAAGAACAGCGAAAATTGGGTAATGC


20101001C-006603 : CCCTGCAGAAGTTGATGAAGAAGGAAAAGACATCAATCCTCATATCCCTCAGTATATTTC
                   ---------+---------+---------+---------+---------+---------+ 343
BFLT1_0081_H05.b : CCCTGCAGAAGTTGATGAAGAAGGAAAAGACATCAATCCTCATATCCCTCAGTATATTTC
AMP01_0003_E07.b : CCCTGCAGAAGTTGATGAAGAAGGAAAAGACATCAATCCTCATATCCCTCAGTATATTTC
DCI01_0029_G06.b : CCCTGCAGAAGTTGATGAAGAAGGAAAAGACATCAATCCTCATATCCCTCAGTATATTTC
AMP01_0001_D10.b : CCCTGCAGAAGTTGATGAAGAAGGAAAAGACATCAATCCTCATATCCCTCAGTATATTTC
OVRT1_0145_A02.b : CCCTGCAGAAGTTGATGAAGAAGGAAAAGACATCAATCCTCATATCCCTCAGTATATTTC


20101001C-006603 : TTCAGTGCCATGGTATATTGATCCATCAAAAAGACCTACCTTAAAGCACCAGAGACCACA
                   ---------+---------+---------+---------+---------+---------+ 403
BFLT1_0081_H05.b : TTCAGTGCCATGGTATATTGATCCATCAAAAAGACCTACCTTAAAGCACCAGAGACCACA
AMP01_0003_E07.b : TTCAGTGCCATGGTGTATTGATCCATCAAAAAGACCTACCTTAAAGCACCAGAGACCACA
DCI01_0029_G06.b : TTCAGTGCCATGGTATATTGATCCATCAAAAAGACCTACCTTAAAGCACCAGAGACCACA
AMP01_0001_D10.b : TTCAGTGCCATGGTATATTGATCCATCAAAAAGACCTACCTTAAAGCACCAGAGACCACA
OVRT1_0145_A02.b : TTCAGTGCCATGGTATATTGATCCATCAAAAAGACCTACCTTAAAGCACCAGAGACCACA


20101001C-006603 : GCCAGAGAAACAGAAGCAGTATAGCTCATCTGGAGAATGGTACAAGAGGGGCGTGAAAGA
                   ---------+---------+---------+---------+---------+---------+ 463
BFLT1_0081_H05.b : GCCAGAGAAACAGAAGCAGTATAGCTCATCTGGAGAATGGTACAAGAGGGGCGTGAAAGA
AMP01_0003_E07.b : GCCAGAGAAACAGAAGCAGTATAGCTCATCTGGAGAATGGTACAAGAGGGGCGTGAAAGA
DCI01_0029_G06.b : GCCAGAGAAACAGAAGCAGTATAGCTCATCTGGAGAATGGTACAAGAGGGGCGTGAAAGA
AMP01_0001_D10.b : GCCAGAGAAACAGAAGCAGTATAGCTCATCTGGAGAATGGTACAAGAGGGGCGTGAAAGA
OVRT1_0145_A02.b : GCCAGAGAAACAGAAGCAGTATAGCTCATCTGGAGAATGGTACAAGAGGGGCGTGAAAGA


20101001C-006603 : GAATTCCATAACTACTAAGTACCGCAAAGGAGCATGTGAAAACTGTGGAGCCATGACACA
                   ---------+---------+---------+---------+---------+---------+ 523
BFLT1_0081_H05.b : GAATTCCATAACTACTAAGTACCGCAAAGGAGCATGTGAAAACTGTGGAGCCATGACACA
AMP01_0003_E07.b : GAATTCCATAACTACTAAGTACCGCAAAGGAGCATGTGAAAACTGTGGAGCCATGACACA
DCI01_0029_G06.b : GAATTCCATAACTACTAAGTACCCGCAAGGAGCATGTGAAAACTGTGGAGCCATGACACA
AMP01_0001_D10.b : GAATTCCATAACTACTAAGTACCGCAAAGGAGCATGTGAAAACTGTGGAGCCATGACACA
OVRT1_0145_A02.b : GAATTCCATAACTACTAAGTACCGCAAAGGAGCATGTGAAAACTGTGGAGCCATGACACA


20101001C-006603 : CAAAAAAAAAGACTGCTTTGAGAGACCTAGACGTGTTGGAGCAAAATTTACAGGTACTAA
                   ---------+---------+---------+---------+---------+---------+ 583
BFLT1_0081_H05.b : CAAAAAAAAAGACTGCTTTGAGAGACCTAGACGTGTTGGAGCAAAATTTACAGGTACTAA
AMP01_0003_E07.b : CAAAAAAAAAGACTGCTTTGAGAGACCTAGACGTGTTGGAGCAAAATTTACAGGTACTAA
DCI01_0029_G06.b : CAAAAAAAAAGACTGCTTTGAGAGACCTAGACGTGTTGGAAGCAAATT*ACAGGTACTAA
AMP01_0001_D10.b : CAAAAAAAAAGACTGCTTTGAGAGACCTAGACGTGTTGGAGCAAAATTTACAGGTACTAA
OVRT1_0145_A02.b : CAAAAAAAAAGACTGCTTTGAGAGACCTAGGCGTGTTGGAGCAAAATTTACAGGTACTAA


20101001C-006603 : TATAGCTCCAGACGAACATATCCAGCCTCAGCTAATGTTTGACTACGATGGAAAGAGGGA
                   ---------+---------+---------+---------+---------+---------+ 643
BFLT1_0081_H05.b : TATAGCTCCAGACGAACATATCCAGCCTCAGCTAATGTTTGACTACGATGGANAGAGGGA
AMP01_0003_E07.b : TATAGCTCCAGACGAACATATCCAGCCTCAGCTAATGTTTGACTACGATGGAAAGAGGGA
DCI01_0029_G06.b : TGTAGCTCCCGACGAACATATCCAGCCTCAGCTAATGTTTGACTACGATGAAAAGAGGat
AMP01_0001_D10.b : TATAGCTCCAGACGAACATATCCAGCCTCAGCTAATGTTTGACTACGATGGAAAGAGGGA
OVRT1_0145_A02.b : TATAGCTCCAGACGAACATATCCAGCCTCAGCTAATGTTTGACTACGATGGAAAGAGGGA


20101001C-006603 : TCGGTGGAACGGCTACAATCCAGAAGAACACATGAAAATTGTAGAAGAATATGCCAAAGT
                   ---------+---------+---------+---------+---------+---------+ 703
BFLT1_0081_H05.b : TCGGTGGAACGGCTACAATCCAGAAGAACACATGANAATTGTAGAAGAATATGCCAAAGT
AMP01_0003_E07.b : TCGGTGGAACGGCTACNATCCAGAAGAACACATGAAAATTGTAGAAAAATATGCCAAAAT
DCI01_0029_G06.b : cggtggaaacgctacnatccaaagaacccatgaaaattgtaaaagatattccaaaatttg
AMP01_0001_D10.b : TCGGTGGGACGGCTACCATCCAGAAGAACACATGAAAATTGTTAGAGAATATGCCAAt 
OVRT1_0145_A02.b : TCGGTGGAACGGCTACAATCCAGAAGAACACATGAAAATTGTAGAAGAATATGCCAAAGT


20101001C-006603 : TGATCTGGCAAAACGAACACTGAAAGCCCAAAAACTCCAAGAAGAATTAGCCTCAGGAAA
                   ---------+---------+---------+---------+---------+---------+ 763
BFLT1_0081_H05.b : TGATCTGGCAAAACGAACACTGAAAGCCCAAAAACTCCAAGAAGAATTAGCCTCANGAAA
AMP01_0003_E07.b : TGATCTGGGCAAACGAACACTGAAAGCCCAAAA*CTCCAAAAAGAATTAGCCTCAGGGAA
DCI01_0029_G06.b : atctgcaaaacgaaccctgaaagcccaaaaacttcaagaaaaataacctccagaaaattt
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : TGATCTGGCAAAACGAACACTGAAAGCCCAAAAACTCCAAGAAGAATTAGCCTCAGGAAA


20101001C-006603 : GTTAGTGGAACAGGCTAATTCTCCAAAACACCAGTGGGGAGAAAAAGAACCCAATTTCTC
                   ---------+---------+---------+---------+---------+---------+ 823
BFLT1_0081_H05.b : GTTAGTGGAACAGGCTAATTCTCCAAAACACCAGTGGGGAGAAAGAGAAACCAATTTCTC
AMP01_0003_E07.b : GTTAGTGGAACAGGCTAATTCTCCAAAACACCATTGGGGAGAGAAGGAACCAAATTCCCC
DCI01_0029_G06.b : atggaaaaggctaattctccaaaacccaagggggaaaaaaggaaccaaatcccgaacgga
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : GTTAGTGGAACAGGCTAATTCTCCAAAACACCAGTGGGGAGAAAGAGAANCCAATTTCTC


20101001C-006603 : AACGGAAAAAGATCATAATAGTGAAGATGAAGATGAAGATAAATATGCNGATGATATTGA
                   ---------+---------+---------+---------+---------+---------+ 883
BFLT1_0081_H05.b : AAACGAAAAAGATCATAATAGTGGAGATGAAGATGAAGATAAATATGCNGATGATATTGA
AMP01_0003_E07.b : AACGGGAAAAaagatcttaatattggagatgaaaaatgaaaataaatatgccaaagaaat
DCI01_0029_G06.b : aaagatctttttatgaaaagaataagaaaatattatgcaaagaattgcctgcctggaaca
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : AACGGAAAAGATTCAT*ATAGTGAAGATGAAGATGAAGATA*ATATGCNGATGATATTGA


20101001C-006603 : CATGCCTGGACAGATTTTGACCCCTAGAGACGAAATACTGTCCGGAATCTCAAAATCGAA
                   ---------+---------+---------+---------+---------+---------+ 943
BFLT1_0081_H05.b : CATGCCTGAACAGATTTTGACCTCTAGAGACGAAATACTGTCCGGAATCTCAAAATCGAA
AMP01_0003_E07.b : tgacatgccctgaaaaaattttgaatccaaaaaaccaattatggtccggaaaccccaaat
DCI01_0029_G06.b : attttacccaaaaaaaaattttggccggaccccaaattcaaaaaaaaccaaaattggcga
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : CATGCCTGGACAGATTTTGACTCTAAGAGACGATTTACTGTCggatctcagattcgagaa


20101001C-006603 : AAGATATAGCAAAATATTTGCGGGATTTAAGATCAAAT......................
                   ---------+---------+---------+---------+---------+---------+ 981
BFLT1_0081_H05.b : AAGATATAGCAAAATATTTGCGGGATTTAAGATCAAATctgcttacttggatcccaaact
AMP01_0003_E07.b : tccaaaaaataaaaccaaaatttttgcggaattaaatccaaattcggctttctttattcc
DCI01_0029_G06.b : tttaatccaattggttactggtcccaacttagcttgaaaaaatcctttccatgcgaaaac
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : gattagcaaaatatttgcgattnagatccaattctgcttactatgatcccaaactagagc


20101001C-006603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 981
BFLT1_0081_H05.b : aaaggcatggaagagaatcctttgccattgcaggaaaaatccaaatgaatggacttgccg
AMP01_0003_E07.b : caaactagagcattggaaaaaaatccctttgcccatggcggaaaaaaacccaaaaagtgg
DCI01_0029_G06.b : ccaaaatggcttgcgggaatattttaaaacagggaacaataaggccaaaaatgttttgga
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : atgaaagagatcccttgccattgcagaaagatccaaatgagtgaccttgcgggaatactt


20101001C-006603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 981
BFLT1_0081_H05.b : gggataactgtgtaaatccagggaaacttttaatggcccaaccaattgttgctgtgaagc
AMP01_0003_E07.b : acctattgcggggaaaattttgtataataccagggcgaatccttatttggggtca    
DCI01_0029_G06.b : accaaaaaggtgaagttttaccacttaaaaaacttttaatctctccaaaaatttaaaccc
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : gttaaatccaggaaacctatcatggtcaaacaattgtttgctgggagcaaaccaaggtcg


20101001C-006603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 981
BFLT1_0081_H05.b : ctaaacaagggctgaaaggctttcaacccatccaaaaaaaaagggttttaatcccccagc
AMP01_0003_E07.b :                                                             
DCI01_0029_G06.b : aaaccctcaaaaggggcaaattccccccatttttccaaaatggaaaaaggggccaagggg
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : gatggatttcatccatccaaaaaaaacgtgttttatccttcttcaaaagaaatttaaaca


20101001C-006603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 981
BFLT1_0081_H05.b : ccaaaaaaattctcaaaacccaaaaactctcggaaaattgggcggaaaatttgggccccc
AMP01_0003_E07.b :                                                             
DCI01_0029_G06.b : gggcccaaaagagaaaccccggtttaagggaaatttttcttgaaaaaataaaa      
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : cccaaaaaacccctccatttggggggggcttgatccccccccacgtttttttaaaaaaat


20101001C-006603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 981
BFLT1_0081_H05.b : ccccaggtttttccaaagaaaaatggggatccaaggggggc                  
AMP01_0003_E07.b :                                                             
DCI01_0029_G06.b :                                                             
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : tatttaaaaggggcttaaagaggggggcccccccaaaaggaaaaaaacccgggtttggag


20101001C-006603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 981
BFLT1_0081_H05.b :                                                             
AMP01_0003_E07.b :                                                             
DCI01_0029_G06.b :                                                             
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : gggaagcccttttcttgggaggtattaggagaccgcnaaaaanatggnnnnnnaaaaaan


20101001C-006603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 981
BFLT1_0081_H05.b :                                                             
AMP01_0003_E07.b :                                                             
DCI01_0029_G06.b :                                                             
AMP01_0001_D10.b :                                                             
OVRT1_0145_A02.b : nnttttttctttctctccgcgcgtc