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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20101001C-009603

Length: 934

Sequence:  [FASTA format sequence]
CATGCGCCAC AAAAGGTTCC GATCCGGAAA CTACCCATCC TCGTTAAGCA ACGAGACAGA
CCGCCTGGTA CACTGGTGCC ACGGGGCGCC CGGCGTCATC CACACGCTCA TGCAGGCGTA
CAAGGTGTTT AAGGAGGAGA AGTACCTGAG GGACGCCGTG GAGTGCAGCG ACGTGATTTG
GCAGCGGGGC CTGCTGCGCA AGGGCTACGG CATCTGCCAC GGGACTGCGG GCAACGGCTA
CTCCTTCCTC TCCCTTTACC GCCTCACGCA GGACAAGAAG TACCTCTACC GAGCTTGCAA
GTTTGCAGAG TGGTGTCTGG AGTACGGAGC ACATGGTTGC CGCATTCCCG ACAGGCCCTA
CTCTCTCTTC GAAGGCATGG CCGGCGCCAT TCACTTCCTC TCCGACATCC TGGCCCCCGA
GACAGCACGG TTTCCAGCAT TTGAACTCGG CTCTTCAGAG AGGGATCCAA AGGTGCAAAA
AGACTCCTAA GGGACCCGAC GGGACCACAG GCCGCCAGGT TGCCTGGCGC CTGACACAGA
AGCCACCGTG CATCCTGAGG AAGGGAGGAC GGAGGGAGCA GAGCCCCGCA GACCCCCGCC
CCGCCAGCCT GCTGTGACCG TGCTCCCCTC GCTGGTGTCA GCGTGACGTC TCCGTGTCCA
GTGCTGCGTA ATGTTTGCAT GTCCCTCGGT GTTTGCTCTC CGTAGGCGTA GGTTGTTCTC
AGCGGAAGCC CTTCTCTGTC CATGAGCCCG AGCTGGCCGT GCATGAGGGC ACACAGCAGC
CCCTTCTCCG TACCCAATAA AGCGGGGTGC TTCTGTATTG GAAAACAGGA CACAGGCAAG
TGGTGTCTCT CTTATGTACC AAAAAAACTC TCTTTTAAGA TGCCATCCCA GTGTGAAACT
TTTCCCACAT TTCCTTGTGG AACCCTTTTG GGGG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20101001C-009603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SPL01_0057_B02.b : nnnnggcatgtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_H03.b :       gaggctcttggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20101001C-009603 : .....................CATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
                   ---------+---------+---------+---------+---------+---------+ 39
SPL01_0057_B02.b : xxxxxxxxxxxxxxxxxxxxxCATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
OVR01_0037_H03.b : xxxxxxxxxxxxxxxxxxxxxxctgttcaactggAGGTTCCGATCCGGAAACTACCCATC


20101001C-009603 : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
                   ---------+---------+---------+---------+---------+---------+ 99
SPL01_0057_B02.b : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
OVR01_0037_H03.b : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT


20101001C-009603 : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
                   ---------+---------+---------+---------+---------+---------+ 159
SPL01_0057_B02.b : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
OVR01_0037_H03.b : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT


20101001C-009603 : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
                   ---------+---------+---------+---------+---------+---------+ 219
SPL01_0057_B02.b : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
OVR01_0037_H03.b : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA


20101001C-009603 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
                   ---------+---------+---------+---------+---------+---------+ 279
SPL01_0057_B02.b : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
OVR01_0037_H03.b : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA


20101001C-009603 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
                   ---------+---------+---------+---------+---------+---------+ 339
SPL01_0057_B02.b : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
OVR01_0037_H03.b : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG


20101001C-009603 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
                   ---------+---------+---------+---------+---------+---------+ 399
SPL01_0057_B02.b : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
OVR01_0037_H03.b : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT


20101001C-009603 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
                   ---------+---------+---------+---------+---------+---------+ 459
SPL01_0057_B02.b : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
OVR01_0037_H03.b : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA


20101001C-009603 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
                   ---------+---------+---------+---------+---------+---------+ 519
SPL01_0057_B02.b : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
OVR01_0037_H03.b : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG


20101001C-009603 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
                   ---------+---------+---------+---------+---------+---------+ 579
SPL01_0057_B02.b : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
OVR01_0037_H03.b : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC


20101001C-009603 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTGACCGTGCTCCCCTCGCTGGTGTC
                   ---------+---------+---------+---------+---------+---------+ 639
SPL01_0057_B02.b : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
OVR01_0037_H03.b : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTGACCGTGCTCCCCTCGCTGGTGTC


20101001C-009603 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
                   ---------+---------+---------+---------+---------+---------+ 699
SPL01_0057_B02.b : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
OVR01_0037_H03.b : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT


20101001C-009603 : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC
                   ---------+---------+---------+---------+---------+---------+ 758
SPL01_0057_B02.b : CCGTANGCGTANGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAGCCCCGAGCTGGCC
OVR01_0037_H03.b : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC


20101001C-009603 : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
                   ---------+---------+---------+---------+---------+---------+ 818
SPL01_0057_B02.b : CTGCATGAAGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
OVR01_0037_H03.b : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT


20101001C-009603 : TGGAAAACAGGACACAGGCAAGTGGTGTCTCTCTTATGTACCAAAAAAACTCTCTTTTAA
                   ---------+---------+---------+---------+---------+---------+ 878
SPL01_0057_B02.b : TGGcagacggacaccagcagggggttgtctctccttagttaccagaaagactctcctttt
OVR01_0037_H03.b : TGGAAAACAGGACACAGGCAAGTGGTGTCTCTCTTATGTACCAAAAAAACTCTCTTTTAA


20101001C-009603 : GATGCCATCCCAGTGTGAAACTTTTCCCACATTTCCTTGTGGAACCCTTTTGGGGG....
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b : agaatgccatcccaggggggaaacttttccccagcattttctggtgggaacctttttggg
OVR01_0037_H03.b : GATGCCATCCCAGTGTGAAACTTTTCCCACATTTCCTTGTGGAACCCTTTTGGGGGgagc


20101001C-009603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b : ggaaacttgaaaaaaaaaacttgctcccaaaaatgaaaaaaaaattaccgaaaggtaaaa
OVR01_0037_H03.b : tttgaaaaaaaaattgctcccaaaaatggaaaaaaaaaaccggaaggtaaaaggggtttt


20101001C-009603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b : gggggctttctccctggaaaggggggccgggggaacact                    
OVR01_0037_H03.b : tccttggaaggggggtttggggaagcctttggccccccgtttggaaccaaccccctcttt


20101001C-009603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b :                                                             
OVR01_0037_H03.b : gggggttttttttggttcctcccttttcggggggtttttaggagaaaccccaaagggggg


20101001C-009603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b :                                                             
OVR01_0037_H03.b : ggccccgggtggggaaacttttctttcccccggggtttccccccccctttccccacaggg


20101001C-009603 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b :                                                             
OVR01_0037_H03.b : gctcttttttttttttaggggggtgtaaaaaaaaatttttt