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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20101001C-011177

Length: 1,132

Sequence:  [FASTA format sequence]
GACGGCGGCC CTGCCGGGGG CGGGGAGAGG CAGGGGCGGC CCCCCGGCGT AGGCAAAGGC
TCGGGGGCCG GGGCGCGGCT GCTGCAGCTC TTGCAAGAGC AGAGCCGAGC CGAGCGCCCG
CCGCTGCCCG CCGCCCGCTG CGTGCGCCTC CGCGCCATGG CTGGCCTCAA CTCCCTGGAG
GCGGTGAAAC GCAAGATCCA GGCCCTGCAG CAGCAGGCGG ACGAGGCAGA GGATCGCGCG
CAGGGCCTGC AGCGGGAGCT GGACGGCGAG CGCGAGCGGC GGGAGAAAGC CGAAGGGGAT
GTAGCAGCTC TCAATCGGCG CATCCAACTC GTTGAGGAGG AGTTGGACAG GGCTCAGGAA
CGACTGGCCA CAGCCCTGCA GAAGCTTGAG GAGGCAGAAA AGGCTGCAGA TGAGAGCGAG
AGAGGAATGA AGGTGATAGA AAACCGGGCC ATGAAAGATG AGGAGAAGAT GGAGATTCAG
GAGATGCAGC TCAAAGAGGC CAAGCACATT GCCGAGGAGG CCGACCGCAA ATACGAGGAG
GTAGCTCGTA AGTTGGTCAT CCTGGAGGGC GAGCTGGAGA GGGCAGAGGA GCGTGCCGAG
GTGTCTGAAC TAAAATGTGG TGACCTGGAA GAAGAACTCA AGAATGTCAC CAACAACCTG
AAGTCGCTAG AGGCTGCATC TGAAAAGTAT TCTGAAAAGG AGGATAAATA TGAAGAAGAG
ATTAAACTTC TGTCTGACAA ACTGAAAGAG GCTGAGACCC GTGCTGAATT TGCAGAGAGA
ACAGTTGCAA AACTGGAAAA GACCATCGAT GACCTGGAAG AAAAACTTGC CCAGGCCAAA
GAAGAGAACG TGGGCTTACA TCAGACACTG GATCAGACAC TAAACGAACT AAACTGTATA
TAACCAAAAC AGAAGAGTCT CGTTCCATCA GAAACTCCAG AGCTACGTGT TTTTCTCCTT
CTTTGTAGAA GTTTCTTTTT GTATGCCCCC TTGCTTTGCC TGGAATGTNC AGCAAATTAT
GAATACGTGA CCAAATATTT TGTATCAGAA AAGCTTTGAG CACCAGTTAA ATCTATTCCT
TCCNNTTTTT TCAGTGGNCA CAGCTTTTCA GCTCTATTTT ATCCCTAAAT GC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20101001C-011177 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRT1_0047_B01.b : nggctccttctgcgnacggatgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PCT01_0009_F07.b :                                                             
PBL01_0083_B02.b :                                                             
PBL01_0088_D02.b :                                                             


20101001C-011177 : ..........GACGGCGGCCCTGCCGGGGGCGGGGAGAGGCAGGGGCGGCCCCCCGGCGT
                   ---------+---------+---------+---------+---------+---------+ 50
OVRT1_0047_B01.b : xxxxxxxxxxGACGGCGGCCCTGCCGGGGGCGGGGAGAGGCAGGGGCGGCCCCCCGGCGT
PCT01_0009_F07.b :                                   nnngggcctnnnntnncctgcggtgg
PBL01_0083_B02.b :                                                   nnnggtgxxx
PBL01_0088_D02.b :                                                          nng


20101001C-011177 : AGGCAAAGGCTCGGGGGCCGGGGCGCGGCTGCTGCAGCTCTTGCAAGAGCAGAGCCGAGC
                   ---------+---------+---------+---------+---------+---------+ 110
OVRT1_0047_B01.b : AGGCAAAGGCTCGGGGGCCGGGGCGCGGCTGCTGCAGCTCTTGCAAGAGCAGAGCCGAGC
PCT01_0009_F07.b : ctcggAAGGCTCGGGGGCCGGGGCGCGGCTGCTGCAGCTCTTGCA*GAGCAGAGCCGAGC
PBL01_0083_B02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGCAGAGCCGAGC
PBL01_0088_D02.b : gtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGCCGAGC


20101001C-011177 : CGAGCGCCCGCCGCTGCCCGCCGCCCGCTGCGTGCGCCTCCGCGCCATGGCTGGCCTCAA
                   ---------+---------+---------+---------+---------+---------+ 170
OVRT1_0047_B01.b : CGAGCGCCCGCCGCTGCCCGCCGCCCGCTGCGTGCGCCTCCGCGCCATGGCTGGCCTCAA
PCT01_0009_F07.b : CGAGCGCCCGCCGCTGCCCGCCGCCCGCTGCGTGCGCCTCCGCGCCATGGCTGGCCTCAA
PBL01_0083_B02.b : CGAGCGCCCGCCGCTGCCCGCCGCCCGCTGCGTGCGCCTCCGCGCCATGGCTGGCCTCAA
PBL01_0088_D02.b : CGAGCGCCCGCCGCTGCCCGCCGCCCGCTGCGTGCGCCTCCGCGCCATGGCTGGCCTCAA


20101001C-011177 : CTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCAGA
                   ---------+---------+---------+---------+---------+---------+ 230
OVRT1_0047_B01.b : CTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCAGA
PCT01_0009_F07.b : CTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCAGA
PBL01_0083_B02.b : CTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCAGA
PBL01_0088_D02.b : CTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCAGA


20101001C-011177 : GGATCGCGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGGGAGAAAGC
                   ---------+---------+---------+---------+---------+---------+ 290
OVRT1_0047_B01.b : GGATCGCGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGGGAGAAAGC
PCT01_0009_F07.b : GGATCGCGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGGGAGAAAGC
PBL01_0083_B02.b : GGATCGCGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGGGAGAAAGC
PBL01_0088_D02.b : GGATCGCGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGGGAGAAAGC


20101001C-011177 : CGAAGGGGATGTAGCAGCTCTCAATCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAG
                   ---------+---------+---------+---------+---------+---------+ 350
OVRT1_0047_B01.b : CGAAGGGGATGTAGCAGCTCTCAATCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAG
PCT01_0009_F07.b : CGAAGGGGATGTAGCAGCTCTCAATCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAG
PBL01_0083_B02.b : CGAAGGGGATGTAGCAGCTCTCAATCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAG
PBL01_0088_D02.b : CGAAGGGGATGTAGCAGCTCTCAATCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAG


20101001C-011177 : GGCTCAGGAACGACTGGCCACAGCCCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGA
                   ---------+---------+---------+---------+---------+---------+ 410
OVRT1_0047_B01.b : GGCTCAGGAACGACTGGCCACAGCCCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGA
PCT01_0009_F07.b : GGCTCAGGAACGACTGGCCACAGCCCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGA
PBL01_0083_B02.b : GGCTCAGGAACGACTGGCCACAGCCCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGA
PBL01_0088_D02.b : GGCTCAGGAACGACTGGCCACAGCCCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGA


20101001C-011177 : TGAGAGCGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAAGATGAGGAGAAGAT
                   ---------+---------+---------+---------+---------+---------+ 470
OVRT1_0047_B01.b : TGAGAGCGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAAGATGAGGAGAAGAT
PCT01_0009_F07.b : TGAGAGCGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAAGATGAGGAGAAGAT
PBL01_0083_B02.b : TGAGAGCGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAAGATGAGGAGAAGAT
PBL01_0088_D02.b : TGAGAGCGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAAGATGAGGAGAAGAT


20101001C-011177 : GGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAA
                   ---------+---------+---------+---------+---------+---------+ 530
OVRT1_0047_B01.b : GGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAA
PCT01_0009_F07.b : GGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAA
PBL01_0083_B02.b : GGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAA
PBL01_0088_D02.b : GGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAA


20101001C-011177 : ATACGAGGAGGTAGCTCGTAAGTTGGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGA
                   ---------+---------+---------+---------+---------+---------+ 590
OVRT1_0047_B01.b : ATACGAGGAGGTAGCTCGTAAGTTGGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGA
PCT01_0009_F07.b : ATACGAGGAGGTAGCTCGTAAGTTGGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGA
PBL01_0083_B02.b : ATACGAGGAGGTAGCTCGTAAGTTGGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGA
PBL01_0088_D02.b : ATACGAGGAGGTAGCTCGTAAGTTGGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGA


20101001C-011177 : GCGTGCCGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCAC
                   ---------+---------+---------+---------+---------+---------+ 650
OVRT1_0047_B01.b : GCGTGCCGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCAC
PCT01_0009_F07.b : GCGTGCCGAGGTGTCTGAANCTAAATGTGGTGACCTGNAAGAAGAAACTCAGAATGTCAC
PBL01_0083_B02.b : GCGTGCCGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCAC
PBL01_0088_D02.b : GCGTGCCGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCAC


20101001C-011177 : CAACAACCTGAAGTCGCTAGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGATAAATA
                   ---------+---------+---------+---------+---------+---------+ 710
OVRT1_0047_B01.b : CAACAACCTGAAGTCGCTAGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGGATAATA
PCT01_0009_F07.b : NNCACACCTGAAGTCGCTAGAGGCTGCATCTGAAAAGTATTCTGAAAAGGANNGATAATA
PBL01_0083_B02.b : CAACAACCTGAAGTCGCTAGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGATAAATA
PBL01_0088_D02.b : CAACAACCTGAAGTCGCTAGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGATAAATA


20101001C-011177 : TGAAGAAGAGATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATT
                   ---------+---------+---------+---------+---------+---------+ 770
OVRT1_0047_B01.b : TGAAGAAGAGATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATT
PCT01_0009_F07.b : TGAAGAAGAGATTNAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATT
PBL01_0083_B02.b : TGAAGAAGAGATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATT
PBL01_0088_D02.b : TGAAGAAGAGATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATT


20101001C-011177 : TGCAGAGAGAACAGTTGCAAAACTGGAAAAGACCATCGATGACCTGG*AAGAAAAACTTG
                   ---------+---------+---------+---------+---------+---------+ 829
OVRT1_0047_B01.b : TGCAGAGAGAACAGTTGCAAAACTGGAAAAAGACATCGATGACCTGGNAAGAAAAACTTG
PCT01_0009_F07.b : TGCAGAGAGGACAGTTTGCAAACTGGNAAAGACCATCGATGACCTGN*AAGAAAAAACTG
PBL01_0083_B02.b : TGCAGAGAGAACAGTTGCAAAACTGGAAAAGACCATCGATGACCTGG*AAGAAAAACTTG
PBL01_0088_D02.b : TGCAGAGAGAACAGTTGCAAAACTGGAAAAGACCATCGATGACCTGG*AAGAAAAACTTG


20101001C-011177 : CCCAGGCCAAAGAAGAGAACGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAAC
                   ---------+---------+---------+---------+---------+---------+ 889
OVRT1_0047_B01.b : CCCAGCCCAAAAGAGAAGACGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAAA
PCT01_0009_F07.b : CCCAGGCCAAAAGAGAAGAAGTGGGCTTACATCGAACACTGGATCAGACCCTAAACGAAC
PBL01_0083_B02.b : CCCAGGCCAAAGAAGAGAACGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAAC
PBL01_0088_D02.b : CCCAGGCCAAAGAAGAGAACGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAAC


20101001C-011177 : TAAACTGTATATAACCAAAACAGAAGAGTCTCGTTCCATCAGAAACTCCAGAGCTACGTG
                   ---------+---------+---------+---------+---------+---------+ 949
OVRT1_0047_B01.b : CTAACTGTATATAACCAAAACAGAAGAATCTCGGTCCATCAGAAACTCCAGAGCNACGGG
PCT01_0009_F07.b : TAACCTGGATTTTACCCAAACggaaaagtcctcgtccatcgaaactccagagctaccttt
PBL01_0083_B02.b : TAAACTGTATATAACCAAAACAGAAGAGTCTCGTTCCATCAGAAACTCCAGAGCTACGTG
PBL01_0088_D02.b : TAAACTGTATATAACCAAAACAGAAGAGTCTCGTTCCATCAGAAACTCCAGAGCTACGTG


20101001C-011177 : TTTTTCTCCT*TCTTTGTAGAAGTTTCTTTTTG*TATGCCCCCTTGCTTTGCCTGGAATG
                   ---------+---------+---------+---------+---------+---------+ 1007
OVRT1_0047_B01.b : TTTTCTCTTC*CCCTGGAAGAAGGTTCTTTTGT*TATTGCCCCTTTGCCTGGCTGGAAtt
PCT01_0009_F07.b : ttttccttcccttggaaaaatttctttggtaattgcccctttccttcccggaaagtgcac
PBL01_0083_B02.b : TTTTTCTCCT*TCTCTGTAGAAGTTNCTTTTTG*TATGCCTCTTNGCTTNNGCTGGAATG
PBL01_0088_D02.b : TTTTTCTCCTCTCTTNGTAGAAGTTTCTTTTGNNTATGCCCTCTTGCTTTGCTGGNAATG


20101001C-011177 : TNCAGCAAATTATGAATACGTGACCAAATATTTTGTATCAGAAAAGCTTTGAGCACCAGT
                   ---------+---------+---------+---------+---------+---------+ 1067
OVRT1_0047_B01.b : gccagccatttttgaatacttgaccaatattttgaaccaaaaagctttgagccccagtta
PCT01_0009_F07.b : caaatataaatacgggcccaatatttttgttcaaaaaacttttgagcccctttaaacttt
PBL01_0083_B02.b : TNCAGCAAATTATGAATACGTGACCAAATATTTTGTATCAGAAAAGCTTTGAGCACCAGN
PBL01_0088_D02.b : TNCAAGCAATTATGAATACGTGACCAAATATTTTGTATCAGAAAAGCTTTGAGCACCAGT


20101001C-011177 : TAAATCTATTCCTTCCNNTTTTTTCAGTGGNCACAGCTTTTCAGCTCTATTTTATCCCTA
                   ---------+---------+---------+---------+---------+---------+ 1127
OVRT1_0047_B01.b : acctatcctttccttttttcagggggcccagcttttccagcccattttatccttaaattg
PCT01_0009_F07.b : tcctccttttttttaagggggccccctttttcccccccttttttccccaaagggcgtttt
PBL01_0083_B02.b : NTAATCTATTCCTTCCNNTTTTTTCAGTGGNCACAGCTTTTCAGCTCTATTTTatcctna
PBL01_0088_D02.b : TAAATCTATCCCT*CCNNTTTTTTCAGTGGNCACAGCTTTTCAGCTCTATTTTATCCCTA


20101001C-011177 : AATGC.......................................................
                   ---------+---------+---------+---------+---------+---------+ 1132
OVRT1_0047_B01.b : ctttttcccaaagagggcggggatttcattggggctaacccttaaaaagggggcattgtt
PCT01_0009_F07.b : cccaaaaggaggggggtgtttctatggggacacccctcttaaaagaggggtttgttctcg
PBL01_0083_B02.b : attgcattnatccctaagtagcaggtattcatatgagcatactctctagactgaggncat
PBL01_0088_D02.b : AATGCattnaatcctaagtaggcaggtatttctatgagcatctctctagactgagggcat


20101001C-011177 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1132
OVRT1_0047_B01.b : tccgggaaaaatcccccccccctttaaaaaacaccccggggtgttcgggggtatttaagg
PCT01_0009_F07.b : ggaaaaaaacaccccccccttataaaaaaacacccctgggttggggggggtttaaaaaag
PBL01_0083_B02.b : tggntctgggaaatgacacccacccttaaaatacgactcatgtctatctggtccattnaa
PBL01_0088_D02.b : tggtccgggagataaaccacccaacttaaatccgactccattccagtctgggtcaataaa


20101001C-011177 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1132
OVRT1_0047_B01.b : gtaaaatacccgggggcccccttgagggcgggccccctttttaggtgggt         
PCT01_0009_F07.b : aaaaaaaaacccgcggcggcccctgggaggggggcccccccattaaaaggggggttcttc
PBL01_0083_B02.b : agtgaagaatccctgctgtccccttggggccgggactccataaagggtgggatcccgcaa
PBL01_0088_D02.b : agtgaagattccctgctgtcccttaggaggcagaacctccataagtgaggggattccgca


20101001C-011177 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1132
OVRT1_0047_B01.b :                                                             
PCT01_0009_F07.b : cccccacaaaaaaaaaaaaaaaatatttttttttgtggggcggcacttataaaaaaaaaa
PBL01_0083_B02.b : gaaaaaaaaaaaagccatgcccacctggtcggccctaaaatccggggccactacgcccct
PBL01_0088_D02.b : agaaaaaaaaaaggccaggtccaacaggtcggcccctaattccccaggccaataccaacc


20101001C-011177 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1132
OVRT1_0047_B01.b :                                                             
PCT01_0009_F07.b : cccccccccccccaacaaaaaaaaagtttttgtttttttttttttttatataaaaaaaaa
PBL01_0083_B02.b : ttgaaaggcccagggctataaaggccggccttccccgcgaaaccttgttttgaaatctcg
PBL01_0088_D02.b : cttttgaagggcctaggggataaaacgcggcccttacccgtgggacacctgggtttgaaa


20101001C-011177 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1132
OVRT1_0047_B01.b :                                                             
PCT01_0009_F07.b : aaacaaaaaaaaatattttttgtgggtggggcgcaccact                   
PBL01_0083_B02.b : tggaagccacccaaacccggaaatttggtgtcccccgccggctcttataaaaccgtt  
PBL01_0088_D02.b : cctctggggttcacccccaattcggaaaatatttggtcccccccgcgcctctgaaaaaaa