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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20101001C-012309

Length: 959

Sequence:  [FASTA format sequence]
GAAGATGGCT CCAGCGATTC TTGCCCGGCT GTCGGGGTGG CAGTGACGAC GGGAAGCAGA
AAGCCAGCTG GTCCCAAGAT CGCTGTTGGA GTGCTGGATG GAGCCTTTCT CTGTCCTCTG
TGATATTTCC AATTTTATAT AATGCCTCAC ATCTCTGCTC CCCCGGGACC CCCTGGAGCC
CCAATGATCC CGAAGAAGAC CGCTTGAACC TAGACCTCAA CCCAGGATGT TGCGGAGGCT
GCTGGAGCGG CCCTGCACAC TGGCCCTGCT TGTGGGCTCC CAGCTGGCCG TCATGATGTA
CCTGTCGCTG GGAGGCTTCC GAAGCCTCAG TGCCCTATTT GGCCGAGAGC AGGAGCCAAC
TTTTGACTAT TCTCATCCCC ATGATGTCTA CAGTAACCTC AGTCACCTGC ATGGGGCCCC
TGTTGCCCCA GGGGGCCCTC CAGCACCTCA AGGTCTGCCC TACTGTCCAG AACGATCCCC
TCTCTTAGTG GGTCCCGTGT CCGTGTCCTT TAGCCCAGTG CCGTCGCTGG CAGAGATTAT
GGAGAGGAAT CCCCGGGTGG AACCAGGGGG CCGGTACCGC CCTGCAGGGT GTGAGGCCCG
GTCCCGAACA GCCATAATTG TGCCCCACCG TGCCCGAGAG CAGCACCTGC GCCTGCTGCT
GTACCACCTG CACCCGTTCC TGCAGCGTCA GCAGCTTGCT TATGGCATCT ATGTCATCCA
CCAGGCTGGA AATGGAACAT TTAATAGGGC AAAGCTGCTG AATATTGGGG TGCGGGAGGC
CCTGCGTGAT GAAAAATGGG ACTGCCTGTT CTTGCATGAT GTGGACCTAC TGCCAGAGAA
TGACCACAAC CTGTATGTGT GCGACCCCCG AGGACCCCGA CATGTTGCTG TTGCCATGAA
CAAGTTTGGA TACAGCCTCC CGTACCCCCA GTACTTTGGA GGGGTCTTCG CGCTCACTC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20101001C-012309 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
PTG01_0046_C04.b :  nggccgtatnnnntgagtaagcagcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PTG01_0105_E01.b : nnggggcacttnnnntttgactaagcagcggnaxxxxxxxxxxxxxxxxxxxxxxxxxxx
PST01_0086_B11.b :               nnncctgcgttggctatggccgtgaccgaggtcagcccccgcagcg


20101001C-012309 : .......GAAGATGGCTCCAGCGATTCTTGCCCGGCTGTCGGGGTGGCAGTGACGACGGG
                   ---------+---------+---------+---------+---------+---------+ 53
PTG01_0046_C04.b : xxxxxxxGAAGATGGCTCCAGCGATTCTTGCCCGGCTGTCGGGGTGGCAGTGACGACGGG
PTG01_0105_E01.b : xxxxxxxxAAGATGGCTCCAGCGATTCTTGCCCGGCTGTCGGGGTGGCAGTGACGACGGG
PST01_0086_B11.b : cccgcttccAGATGGCTCCAGCGATTCTTGCCCGGCTGTCGTGGTGGCAGTGACGACGGG


20101001C-012309 : AAGCAGAAAGCCAGCTGGTCCCAAGATCGCTGTTGGAGTGCTGGATGGAGCCTTTCTCTG
                   ---------+---------+---------+---------+---------+---------+ 113
PTG01_0046_C04.b : AAGCAGAAAGCCAGCTGGTCCCAAGATCGCTGTTGGAGTGCTGGATGGAGCCTTTCTCTG
PTG01_0105_E01.b : AAGCAGAAAGCCAGCTGGTCCCAAGATCGCTGTTGGAGTGCTGGATGGAGCCTTTCTCTG
PST01_0086_B11.b : AAGCAGAAAGCCAGCTGGTCCCAAGATCGCTGTTGGAGTGCTGGATGGAGCCTTTCTCTG


20101001C-012309 : TCCTCTGTGATATTTCCAATTTTATATAATGCCTCACATCTCTGCTCCCCCGGGACCCCC
                   ---------+---------+---------+---------+---------+---------+ 173
PTG01_0046_C04.b : TCCTCTGTGATATTTCCAATTTTATATAATGCCTCACACCTCTGCTCCCCCGGGACCCCC
PTG01_0105_E01.b : TCCTCTGTGATATTTCCAATTTTATATAATGCCTCACATCTCTGCTCCCCCGGGACCCCC
PST01_0086_B11.b : TCCTCTGTGATATTTCCAATTTTATATAATGCCTCACATCTCTGCTCCCCCGGGACCCCC


20101001C-012309 : TGGAGCCCCAATGATCCCGAAGAAGACCGCTTGAACCTAGACCTCAACCCAGGATGTTGC
                   ---------+---------+---------+---------+---------+---------+ 233
PTG01_0046_C04.b : TGGAGCCCCAATGATCCCGAAGAAGACCGCTTGAACCTAGACCTCAACCCAGGATGTTGC
PTG01_0105_E01.b : TGGAGCCCCAATGATCCCGAAGAAGACCGCTTGAACCTAGACCTCAACCCAGGATGTTGC
PST01_0086_B11.b : TGGAGCCCCAATGATCCCGAAGAAGACCGCTTGAACCTAGACCTCAACCCAGGATGTTGC


20101001C-012309 : GGAGGCTGCTGGAGCGGCCCTGCACACTGGCCCTGCTTGTGGGCTCCCAGCTGGCCGTCA
                   ---------+---------+---------+---------+---------+---------+ 293
PTG01_0046_C04.b : GGAGGCTGCTGGAGCGGCCCTGCACACTGGCCCTGCTTGTGGGCTCTCAGCTGGCCGTCA
PTG01_0105_E01.b : GGAGGCTGCTGGAGCGGCCCTGCACACTGGCCCTGCTTGTGGGCTCCCAGCTGGCCGTCA
PST01_0086_B11.b : GGAGGCTGCTGGAGCGGCCCTGCACACTGGCCCTGCTTGTGGGCTCCCAGCTGGCCGTCA


20101001C-012309 : TGATGTACCTGTCGCTGGGAGGCTTCCGAAGCCTCAGTGCCCTATTTGGCCGAGAGCAGG
                   ---------+---------+---------+---------+---------+---------+ 353
PTG01_0046_C04.b : TGATGTACCTGTCGCTGGGAGGCTTCCGAAGCCTCAGTGCCCTATTTGGCCGAGAGCAGG
PTG01_0105_E01.b : TGATGTACCTGTCGCTGGGAGGCTTCCGAAGCCTCAGTGCCCTATTTGGCCGAGAGCAGG
PST01_0086_B11.b : TGATGTACCTGTCGCTGGGAGGCTTCCGAAGCCTCAGTGCCCTATTTGGCCGAGAGCAGG


20101001C-012309 : AGCCAACTTTTGACTATTCTCATCCCCATGATGTCTACAGTAACCTCAGTCACCTGCATG
                   ---------+---------+---------+---------+---------+---------+ 413
PTG01_0046_C04.b : AGCCAACTTTTGACTATTCTCATCCCCACGATGTCTACAGTAACCTCAGTCACCTGCATG
PTG01_0105_E01.b : AGCCAACTTTTGACTATTCTCATCCCCATGATGTCTACAGTAACCTCAGTCACCTGCATG
PST01_0086_B11.b : AGCCAACTTTTGACTATTCTCATCCCCATGATGTCTACAGTAACCTCAGTCACCTGCATG


20101001C-012309 : GGGCCCCTGTTGCCCCAGGGGGCCCTCCAGCACCTCAAGGTCTGCCCTACTGTCCAGAAC
                   ---------+---------+---------+---------+---------+---------+ 473
PTG01_0046_C04.b : GGGCCCCTGTTGCCCCAGGGGGCCCTCCAGCACCTCAAGGTCTGCCCTACTGTCCAGAAC
PTG01_0105_E01.b : GGGCCCCTGTTGCCCCAGGGGGCCCTCCAGCACCTCAAGGTCTGCCCTACTGTCCAGAAC
PST01_0086_B11.b : GGGCCCCTGTTGCCCCAGGGGGCCCTCCAGCACCTCAAGGTCTGCCCTACTGTCCAGAAC


20101001C-012309 : GATCCCCTCTCTTAGTGGGTCCCGTGTCCGTGTCCTTTAGCCCAGTGCCGTCGCTGGCAG
                   ---------+---------+---------+---------+---------+---------+ 533
PTG01_0046_C04.b : GATCCCCTCTCTTAGTGGGTCCCGTGTCCGTGTCCTTTAGCCCAGTGCCGTCGCTGGCAG
PTG01_0105_E01.b : GATCCCCTCTCTTAGTGGGTCCCGTGTCCGTGTCCTTTAGCCCAGTGCCGTCGCTGGCAG
PST01_0086_B11.b : GATCCCCTCTCTTAGTGGGTCCCGTGTCCGTGTCCTTTAGCCCAGTGCCGTCGCTGGCAG


20101001C-012309 : AGATTATGGAGAGGAATCCCCGGGTGGAACCAGGGGGCCGGTACCGCCCTGCAGGGTGTG
                   ---------+---------+---------+---------+---------+---------+ 593
PTG01_0046_C04.b : AGATTATGGAGAGGAATCCCCGGGTGGAACCGGGGGGCCGGTACCACCCTGCAGGGTGTG
PTG01_0105_E01.b : AGATTATGGAGAGGAATCCCCGGGTGGAACCAGGGGGCCGGTACCGCCCTGCAGGGTGTG
PST01_0086_B11.b : AGATTATGGAGAGGAATCCCCGGGTGGAACCAGGGGGCCGGTACCGCCCTGCAGGGTGTG


20101001C-012309 : AGGCCCGGTCCCGAACAGCCATAATTGTGCCCCACCGTGCCCGAGAGCAGCACCTGCGCC
                   ---------+---------+---------+---------+---------+---------+ 653
PTG01_0046_C04.b : AGGCCCGGTCCCGAACAGCCATAATTGTGCCCCACCGTGCCCGAGAGCAGCACCTGCGCC
PTG01_0105_E01.b : AGGCCCGGTCCCGAACAGCCATAATTGTGCCCCACCGTGCCCGAGAGCAGCACCTGCGCC
PST01_0086_B11.b : AGGCCCGGTCCCGAACAGCCATAATTGTGCCCCACCGTGCCCGAGAGCAGCACCTGCGCC


20101001C-012309 : TGCTGCTGTACCACCTGCACCCGTTCCTGCAGCGTCAGCAGCTTGCTTATGGCATCTATG
                   ---------+---------+---------+---------+---------+---------+ 713
PTG01_0046_C04.b : TGCTGCTGTACCACCTGCACCCGTTCCTGCAGCGTCAGCAGCTTGCTTATGGCATCTATG
PTG01_0105_E01.b : TGCTGCTGTACCACCTGCACCCGTTCCTGCAGCGTCAGCAGCTTGCTTATGGCATCTATG
PST01_0086_B11.b : TGCTGCTGTACCACCTGCACCCGTTCCTGCAGCGTCAGCAGCTTGCTTATGGCATCTATG


20101001C-012309 : TCATCCACCAGGCTGGAAATGGAACATTTAATAGGGCAAAGCTGCTGAATATTGGGGTGC
                   ---------+---------+---------+---------+---------+---------+ 773
PTG01_0046_C04.b : TCATCCACCAGGCTGGAAATGGAACATTTAATAGGGCAAAGCTGCTGAATGTTGGGGTGC
PTG01_0105_E01.b : TCATCCACCAGGCTGGAAATGGAACATTTAATAGGGCAAAGCTGCTGAATGTTGGGGTTG
PST01_0086_B11.b : TCATCCACCAGGCTGGAAATGGAACATTTAATAGGGCAAAGCTGCTGAATATTGGGGTGC


20101001C-012309 : GGGAGGCCCTGCGTGATGAAAAATGGGACTGCCTGTTCTTGCATGATGTGGACCTACTGC
                   ---------+---------+---------+---------+---------+---------+ 833
PTG01_0046_C04.b : GGGAGGCCCTGCGTGAAGAANAATGGAACTGCCTGTTCcttgatgatggtgaactactgc
PTG01_0105_E01.b : CGGAGGCCCTGCCTGATGAAAAATGGGACTGCCTGTTCTTGCATGATGTGGACCTACTGC
PST01_0086_B11.b : GGGAGGCCCTGCGTGATGAAGAATGGGACTGCCTGTTCTTGCATGATGTGGACCTACTGC


20101001C-012309 : CAGAGAATGACCACAACCTGTATGTGTGCGACCCCCGAGGACCCCGACATGTTGCTGTTG
                   ---------+---------+---------+---------+---------+---------+ 893
PTG01_0046_C04.b : caaaaatggaccccacctggtagggtgcgacccccaagaccccgacttgttgctgtgccc
PTG01_0105_E01.b : CGAAGAATGACCACAACCTGTATtttgtgcaaccccccaagaacccaaattgttgctggt
PST01_0086_B11.b : CAGAGAATGACCACAACCTGTATGTGTGCGACCCCCGAGGACCCCGACATGTTGCTGTTG


20101001C-012309 : CCATGAACAAGTTTGGATACAGCCTCCCGTACCCCCAGTACTTTGGAGGGGTCTTCGCGC
                   ---------+---------+---------+---------+---------+---------+ 953
PTG01_0046_C04.b : tgaaaaattttgaaacagcctcccgtacccccgtaatttgaaggggtctgggccctcatc
PTG01_0105_E01.b : gccatgaacaattttgattaagccccccctaaccccaataatttgtgagggttctcggcg
PST01_0086_B11.b : CCATGAACAAGTTTGGATACAGCCTCCCGTACCCCCAGTACTTTGGAGGGGTCTTCGCGC


20101001C-012309 : TCACTC......................................................
                   ---------+---------+---------+---------+---------+---------+ 959
PTG01_0046_C04.b : ctgaccagtactgaaaataaagggttccccataaaaccggggctgggtgggtaaaaaaat
PTG01_0105_E01.b : cttactcctgaaccatacccggaaaaagaaagggtttccccaaagaaaaacgggggcttg
PST01_0086_B11.b : TCACTCctgaccantacctgaagataaatggctcccccaatgaatatggggctggggtgg


20101001C-012309 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 959
PTG01_0046_C04.b : aaatttgcccccggaacccccccgggggataaaatttccccccccccactttgggaacca
PTG01_0105_E01.b : gggtgtgtaagaataaaaaattttcctaccaggtttcccccccgtgggaataaaaaattc
PST01_0086_B11.b : tgaagatgatgaccttgctaccagggtaccccccctgggaaaaaaattctcgccccccca


20101001C-012309 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 959
PTG01_0046_C04.b : tttagtggtgaacccccggaaaaagggcacaagaaaaaccccccaatattacccccgggg
PTG01_0105_E01.b : tccccccccaccttttttgggaaacttataatattgggaaacccccgagaaaaatagggg
PST01_0086_B11.b : atctggggaaactataaaaggtgaacccccgaggaaataagggccacaagaaaatcccca


20101001C-012309 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 959
PTG01_0046_C04.b : ccccaccaaaattcggaacaagaggggaaaccccggaaacccgtgtgggggaaagggggg
PTG01_0105_E01.b : aacaggaaaaatccccccacaattgaccccccggggcccaaccaaatattggggaaaaag
PST01_0086_B11.b : cgattttaccccccggtccgatcccaaatcccggaaccaaatgggataaaccccgaaata


20101001C-012309 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 959
PTG01_0046_C04.b : cccccttttaaaaaacaccaaaatttaaaagcccgggggcggaaacaagggctcttacca
PTG01_0105_E01.b : agggggaaaacccccgaaaacccctgtgggggtccaaaaggggcgcctcttttaaaaaat
PST01_0086_B11.b : cccattgcggttcaaaatgggccctttcttcaaaatctcccaaatttgaaaagcctcggg


20101001C-012309 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 959
PTG01_0046_C04.b : aggttcccggttttaaaaaagaagagcgccccacagggtccttcttcgaccaccccccgg
PTG01_0105_E01.b : cccccaaaatatttgaatagcccgggggccccgaaaaccaggtccctttaaaccaggtgt
PST01_0086_B11.b : gtcccggaaccccggtc                                          


20101001C-012309 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 959
PTG01_0046_C04.b : gaagacccttataagagttcccccacca                               
PTG01_0105_E01.b : ccccagatttctataaaaaagggaagccccccccaaagtggtgcctttttattaaaaaca
PST01_0086_B11.b :                                                             


20101001C-012309 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 959
PTG01_0046_C04.b :                                                             
PTG01_0105_E01.b : cccgcgggagaaagaaccttataaaagg                               
PST01_0086_B11.b :