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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20101001S-078045

Length: 569

Sequence:  [FASTA format sequence]
TTTTATTTTT TNNTTNNTTT TTTTNTTTTT TTTTTTTCTT TTTTNTCCTA CCXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCTCGACT
CCGACGCCGC TGCCGCCGCA GGCCCCTCCA CGCCCACACC CCCTACCCAG TGCCCAGCCA
TGGAGGCCAT CAAGAAGAAG ATGCAGATGC TGAAGCTGGA CAAGGAGAAC GCCATCGACC
GGGCCGAGCA GGCGGAGTCG GATAAGAAAG CTGCTGAGGA GAAGTGCAAG CAGGTGGGGG
AGGAGCTGAC GCACCTCCAC AAGAAGCTGA AGGGGACAGA GGATGAGCTG GACCTATACT
CCGAAAACCT GAAGGACGCG CAAGAGTAAC TGGAGTTGAG CTATATGAAA GCCTCCGACT
CCAAAGGGGA TGTAGCAGCT CTCAATCAGC GCATTCAACT CCCTCAGGAC GAGAAGCACA
GGTCTCAAGA ACGACTATCC ACAGCCCTGC CTAATCTCGA AGAGGCAGAA CAGGCTGCAG
ATGCAACCCA GAGACGAACG AAGGTGACAA AAACCCGCGC CCTGTACGAA TCCGAAAAGA
TGGTGATTCA TGATAAGCAG CTCGCAGAGG ACAAATCCAC TGCCGATGAC GCCTACGACC
ACTTCAAAGA AGCAGCCCGT AAATTGATAA TGCCGCGACA CGTATCTTTC ATGCCTCTGA
GCCTGTCAAG TGTCCTACTA AATTCGCGCG ACCGAGAGAA CACCCCTCGA TGCCACCATC
CATATGCGTC TCCCATCACC CATTCCGAAT CGCATTCATA AAGTAAGATA ATATCCGATC
ACCATAACCT CAATAGATAC CATACAAGAG CTCCCCCAAA CATCTTTTAC CAG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain isoform 1 [Homo sapiens].	218	3e-57	O
		TPM1	tropomyosin alpha-1 chain isoform 1 [Homo sapiens].	197	5e-51	O
		TPM1	tropomyosin alpha-1 chain isoform 4 [Homo sapiens].	197	5e-51	O
		TPM1	tropomyosin alpha-1 chain isoform 3 [Homo sapiens].	197	5e-51	O
		TPM1	tropomyosin alpha-1 chain isoform 5 [Homo sapiens].	197	5e-51	O
		TPM2	tropomyosin beta chain isoform 2 [Homo sapiens].	191	3e-49	O
		TPM2	tropomyosin beta chain isoform 1 [Homo sapiens].	191	3e-49	O
		TPM3	tropomyosin alpha-3 chain isoform 1 [Homo sapiens].	191	3e-49	O
		TPM1	tropomyosin alpha-1 chain isoform 7 [Homo sapiens].	160	7e-40	O
		TPM1	tropomyosin alpha-1 chain isoform 2 [Homo sapiens].	160	7e-40	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Tpm1	tropomyosin alpha-1 chain isoform 9 [Mus musculus].	197	4e-51	O
		Tpm1	tropomyosin alpha-1 chain isoform 5 [Mus musculus].	197	4e-51	O
		Tpm1	tropomyosin alpha-1 chain isoform 4 [Mus musculus].	197	4e-51	O
		Tpm1	tropomyosin alpha-1 chain isoform 1 [Mus musculus].	197	4e-51	O
		Tpm1	tropomyosin alpha-1 chain isoform 3 [Mus musculus].	197	4e-51	O
		Tpm2	tropomyosin beta chain [Mus musculus].	193	8e-50	O
		Tpm3	tropomyosin alpha-3 chain [Mus musculus].	190	7e-49	O
		Tpm1	tropomyosin alpha-1 chain isoform 2 [Mus musculus].	161	3e-40	O
		Tpm1	tropomyosin alpha-1 chain isoform 10 [Mus musculus].	90.9	6e-19	O
		Tpm1	tropomyosin alpha-1 chain isoform 8 [Mus musculus].	90.9	6e-19	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC609879	PREDICTED: similar to tropomyosin 4 isoform 1 isoform 5 [Canis familiaris].	222	2e-58	O
		LOC609879	"PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis familiaris]. "	222	2e-58	O
		TPM1	PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 26 [Canis familiaris].	197	5e-51	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform 25 [Canis familiaris].	197	5e-51	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform 1 [Canis familiaris].	197	5e-51	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform 24 [Canis familiaris].	197	5e-51	O
		TPM1	"PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis familiaris]. "	197	5e-51	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform 10 [Canis familiaris].	197	5e-51	O
		TPM1	PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 6 [Canis familiaris].	197	5e-51	O
		TPM1	PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 5 [Canis familiaris].	197	5e-51	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain [Bos taurus].	219	1e-57	O
		TPM1	tropomyosin alpha-1 chain [Bos taurus].	195	3e-50	O
		TPM2	tropomyosin beta chain [Bos taurus].	193	1e-49	O
		TPM3	tropomyosin alpha-3 chain [Bos taurus].	191	3e-49	O
		LOC788816	"PREDICTED: tropomyosin 2, beta-like [Bos taurus]. "	167	6e-42	O
		LOC788816	"PREDICTED: tropomyosin 2, beta-like isoform 1 [Bos taurus]. "	132	2e-31	O
		LOC540799	PREDICTED: tropomyosin 4-like [Bos taurus].	84.7	5e-17	O
		LOC540799	PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].	84.7	5e-17	O
		TPM3	PREDICTED: tropomyosin 4-like [Bos taurus].	83.6	1e-16	O
		LOC783188	PREDICTED: tropomyosin 4-like [Bos taurus].	83.6	1e-16	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		TPM1	tropomyosin alpha-1 chain [Sus scrofa].	191	3e-49	O
		TPM2	tropomyosin beta chain [Sus scrofa].	187	2e-48	O
		TPM4	tropomyosin alpha-4 chain [Sus scrofa].	92.4	1e-19	O
		TPM3	tropomyosin alpha-3 chain [Sus scrofa].	85.1	2e-17	O