Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-000661

Sequence: [FASTA format sequence] GATTCATTTT CAAAGTAAAC GTTTAAGAGC CGAGGCATTC CTATCCTCTT CTAAGGCGTT ATTCCTGGAG GCTCATTCAC CGCCAGCACC TCCGCTGCCT GCAGGCATTG CTGTCACCGT CACCGTGACG GCGCGCACGA TTTTCAGTTG GCCCGCTTCC CCTCGTGATT AGGACAGACG CGGGCACTCT GGCCCAGCCG TCTTGGCTCA GTATCTGCAG GCGTCCGTCT CGGGACGGAG CTCAGGGGAA GAGCGTGACT CCAGTTGAAC GTGATAGTCG GTGCGTTGAG AGGAGACCCA GTCGGGTGTC GAGTCAGAAG GGGCCCGGGG CCCGAGGCCC TGGGCAGGAC GGCCCGTGCC CTGCATCACG GGCCCAGCGT CCTAGAGGCA GGACTCTGGT GGAGAGTGTG AGGGTGCCTG GGGCCCCTCC GGAGCTGGGG CCGTGCGGTG CAGGTTGGGC TCTCGGCGCG GTGTTGGCTG TTTCTGCGGG ATTTGGAGGA ATTCTTCCAG TGATGGGAGT CGCCAGTGAC CGGGCACCAG GCTGAGAGCC AGTCTGCCCC GAATCTCTTC CCCCTCGTCT CCTGCGTCAG CCCCCCGTCC GATGAGAGCC TGGTGGCCCT GGGCTGCCTG GCCCGGGACT TCCTGCCCAG CTCCGTCACC TTCTCCTGGA ACTACAAGAA CAGCAGCAAG GTCAGCAGCC AGAACATCCA GGACTTCCCG TCCGTCCTGA GAGGCGGCAA GTACTTGGCC TCCTCCCGGG TGCTCCTACC CTCTGTGAGC ATCCCCCAGG ACCCAGAGGC CTTCCTGGTG TGCGAGGTCC AGCACCCCAG TGGCACCAAG TCCGTGTCCA TCTCTGGGCC AGTCGTAGAG GAGCAGCCCC CCGTCTTGAA CATCTTCGTC CCCACCCGGG AGTCCTTCTC CAGTACTCCC CAGCGCACGT CCAAGCTCAT CTGCCAGGCC TCAGACTTCA GCCCCAAGCA GATCTCCATG GCCTGGTTCC GTGATGGGAA ACGGGTGGTG TCTGGCGTCA GCACAGGCCC CGTGGAAACC CTACAGTCCA GGTCCGGTGA CCTACAGGCT CCACAGCATG CTGACCGTCA CGGAGTCCGA GTGGCTCAGC CAGAGCGTCT TTCACTGCCC AGTGGAGCAC AA

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Igh-VJ558 PREDICTED: ig alpha chain C region [Mus musculus]. 55.8 6e-08 O

Igh-VJ558 PREDICTED: ig alpha chain C region isoform 1 [Mus musculus]. 53.5 3e-07 O

		Locus	Definition	Score	E value	FL
		Igh-VJ558	PREDICTED: ig alpha chain C region [Mus musculus].	55.8	6e-08	O
		Igh-VJ558	PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].	53.5	3e-07	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC480788 PREDICTED: similar to T-cell receptor beta chain C region isoform 5 [Canis familiaris]. 53.1 5e-07 O

LOC480788 PREDICTED: similar to T-cell receptor beta chain C region isoform 23 [Canis familiaris]. 52.8 6e-07 O

LOC480788 PREDICTED: similar to T-cell receptor beta chain C region isoform 16 [Canis familiaris]. 50.8 2e-06 O

LOC480788 PREDICTED: similar to T-cell receptor beta chain C region isoform 15 [Canis familiaris]. 50.8 2e-06 O

LOC477182 PREDICTED: similar to Tyrosine-protein phosphatase non-receptor type substrate 1 precursor (SHP substrate-1) (SHPS-1) (Inhibitory receptor SHPS-1) (Signal-regulatory protein alpha-1) (Sirp-alpha-1) (Sirp-alpha-2) (Sirp-alpha-3) (MyD-1 antigen) (Brain Ig-like ... [Canis familiaris]. 50.1 2e-06 O

LOC480788 PREDICTED: similar to T-cell receptor beta chain C region isoform 6 [Canis familiaris]. 50.1 4e-06 O

Locus	Definition	Score	E value	FL
LOC480788	PREDICTED: similar to T-cell receptor beta chain C region isoform 5 [Canis familiaris].	53.1	5e-07	O
LOC480788	PREDICTED: similar to T-cell receptor beta chain C region isoform 23 [Canis familiaris].	52.8	6e-07	O
LOC480788	PREDICTED: similar to T-cell receptor beta chain C region isoform 16 [Canis familiaris].	50.8	2e-06	O
LOC480788	PREDICTED: similar to T-cell receptor beta chain C region isoform 15 [Canis familiaris].	50.8	2e-06	O
LOC477182	PREDICTED: similar to Tyrosine-protein phosphatase non-receptor type substrate 1 precursor (SHP substrate-1) (SHPS-1) (Inhibitory receptor SHPS-1) (Signal-regulatory protein alpha-1) (Sirp-alpha-1) (Sirp-alpha-2) (Sirp-alpha-3) (MyD-1 antigen) (Brain Ig-like ... [Canis familiaris].	50.1	2e-06	O
LOC480788	PREDICTED: similar to T-cell receptor beta chain C region isoform 6 [Canis familiaris].	50.1	4e-06	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
LOC524810 hypothetical protein LOC524810 [Bos taurus]. 59.7 5e-09 O

		Locus	Definition	Score	E value	FL
		LOC524810	hypothetical protein LOC524810 [Bos taurus].	59.7	5e-09	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
LOC396781 IgG heavy chain [Sus scrofa]. 64.3 2e-12 O

		Locus	Definition	Score	E value	FL
		LOC396781	IgG heavy chain [Sus scrofa].	64.3	2e-12	O

Assembly Members: 9 TOP

Library Plate Loc. Read Name Accession Full Seq.

BMWN1 0024 D07 BMWN1_0024_D07.b HX207025
CLNT1 0009 G10 CLNT1_0009_G10.b FS657792
CLNT1 0027 B08 CLNT1_0027_B08.b FS659157
ITT01 0003 H11 ITT01_0003_H11.b BW976308
ITT01 0070 E03 ITT01_0070_E03.b BW982242
ITT01 0096 E12 ITT01_0096_E12.b BW984547
SKNB1 0012 E06 SKNB1_0012_E06.b
SPL01 0023 H01 SPL01_0023_H01.b BP159056
SPLT1 0093 H03 SPLT1_0093_H03.b HX246489

SNPs: 2 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
326 C 7 0 0.778 W -
T 2 0 0.222
569 A 2 0 0.222 W N TAC/Y
T 7 0 0.778 TTC/F

Alignment: TOP

20110601C-000661 : ......................................................GATTCA
                   ---------+---------+---------+---------+---------+---------+ 6
ITT01_0070_E03.b : nnngatgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATTCA
ITT01_0003_H11.b :               naaaatgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SKNB1_0012_E06.b :                                      nggggttnnnnnccctgacttgg
CLNT1_0027_B08.b :                                      nnccttcagcgncggxxxxxxxx
CLNT1_0009_G10.b :                                     ttacgttctgcgtcggxxxxxxxx
ITT01_0096_E12.b :                                                             
SPLT1_0093_H03.b :                                                             
BMWN1_0024_D07.b :                                                             
SPL01_0023_H01.b :                                                             


20110601C-000661 : TTTTCAAAGTAAACGTTTAAGAGCCGAGGCATTCCTATCCTCTTCTAAGGCGTTATTCCT
                   ---------+---------+---------+---------+---------+---------+ 66
ITT01_0070_E03.b : TTTTCAAAGTAAACGTTTAAGAGCCGAGGCATTCCTATCCTCTTCTAAGGCGTTATTCCT
ITT01_0003_H11.b : xxxxxxxxxxxxxCGTTTAAGAGCCGAGGCATTCCTATCCTCTTCTAAGGCGTTATTCCT
SKNB1_0012_E06.b : ctctttttaagtaacgTTAAGAGCCGAGGCATTCCTATCCTCTTCTA*GCCTATATTCCT
CLNT1_0027_B08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgcgtAGGCGTTATTCCT
CLNT1_0009_G10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGCGTTATTCCT
ITT01_0096_E12.b :              nnngatxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPLT1_0093_H03.b :            nnnncgcgagtagaggccxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0024_D07.b :                          nnggcgcaggtagaggcagtcgtatttatcgactc
SPL01_0023_H01.b :                                                             


20110601C-000661 : GGAGGCTCATTCACCGCCAGCACCTCCGCTGCCTGCAGGCATTGCTGTCACCGTCACCGT
                   ---------+---------+---------+---------+---------+---------+ 126
ITT01_0070_E03.b : GGAGGCTCATTCACCGCCAGCACCTCCGCTGCCTGCAGGCATTGCTGCCACCGTCACCGT
ITT01_0003_H11.b : GGAGGCTCATTCACCGCCAGCACCTCCGCTGCCTGCAGGCATTGCTGTCACCGTCACCGT
SKNB1_0012_E06.b : GGAGGCTCATTCACCGCCAGCACCTCCGCTGCTTGCAGGCATTGCTGTCACCGTCACCGT
CLNT1_0027_B08.b : GGAGGCTCATTCACCGCCAGCACCTCCGCTGCCTGCAGGCATTGCTGTCACCGTCACCGT
CLNT1_0009_G10.b : GGAGGCTCATTCACCGCCAGCACCTCCGCTGCCTGCAGGCATTGCTGTCACCGTCACCGT
ITT01_0096_E12.b : xxxxxxxxxTTCACCGCCAGCACCTCCGCTGCCCGCAGGCATTGCTGTCACCGTCACCGT
SPLT1_0093_H03.b : xxxxxxxxxxxxACCGCCAGCACCTCCGCTGCCTGCAGGCATTGCTGTCACCGTCACCGT
BMWN1_0024_D07.b : ctatagggaatttaatgaattACCTCCGCTGCCTGTAAGCATTGCTGTCACCGTCACCGT
SPL01_0023_H01.b :                                                             


20110601C-000661 : GACGGCGCGCACGATTTTCAGTTGGCCCGCTTCCCCTCGTGATTAGGACAGACGCGGGCA
                   ---------+---------+---------+---------+---------+---------+ 186
ITT01_0070_E03.b : GACGGCGCGCACGATTTTCAGTTGGCCCGCTTCCCCTCGTGATTAGGACAGACGCGGGCA
ITT01_0003_H11.b : GACGGCGCGCACGATTTTCAGTTGGCCCGCTTCCCCTCGTGATTAGGACAGACGCGGGCA
SKNB1_0012_E06.b : GACGGCGCGCACGATTTTCAGTTGGCCCGCTTCCCCTCGTGATTAGGACAGACGCGGGCA
CLNT1_0027_B08.b : GACGGCGCGCACGATTTTCAGTTGGCCCGCTTCCCCTCGTGATTAGGACAGACGCGGGCA
CLNT1_0009_G10.b : GACGGCGCGCACGATTTTCAGTTGGCCCGCTTCCCCTCGTGATTAGGACAGAAGCGGGCA
ITT01_0096_E12.b : GACGGCGCGCACGATTTTCAGTTGGCCCGCTTCCCCTCGTGATTAGGACAGACGCGGGCA
SPLT1_0093_H03.b : GACGGCGCGCACGATTTTCAGTTGGCCCGCTTCCCCTCGTGATTAGGACAGACGCGGGCA
BMWN1_0024_D07.b : GACGGCGCGCACGATTTTCAGTTGGCCCGCTTCCCCTCGTGATTAGGACAGACGCGGGCA
SPL01_0023_H01.b :                                                           gc


20110601C-000661 : CTCTGGCCCAGCCGTCTTGGCTCAGTATCTGCAGGCGTCCGTCTCGGGACGGAGCTCAGG
                   ---------+---------+---------+---------+---------+---------+ 246
ITT01_0070_E03.b : CTCTGGCCCAGCCGTCTTGGCTCAGTATCTGCAGGCGTCCGTCTCGGGACGGAGCTCAGG
ITT01_0003_H11.b : CTCTGGCCCAGCCGTCTTGGCTCAGTATCTGCAGGCGTCCGTCTCGGGACGGAGCTCAGG
SKNB1_0012_E06.b : CTCTGGCCCAGCCGTCTTGGCTCAGTATCTGCAGGCGTCCGTCTCGGGACGGAGCTCAGG
CLNT1_0027_B08.b : CTCTGGCCCAGCCGTCTTGGCTCAGTATCTGCAGGCGTCCGTCTCGGGACGGAGCTCAGG
CLNT1_0009_G10.b : CTCTGGCCCAGCCGTCTTGGCTCAGTATCTGCAGGCGTCCGTCTCGGGACGGAGCTCAGG
ITT01_0096_E12.b : CTCTGGCCCAGCCGTCTTGGCTCAGTATCTGCAGGCGTCCGTCTCGGGACGGAGCTCAGG
SPLT1_0093_H03.b : CTCTGGCCCAGCCGTCTTGGCTCAGTATCTGCAGGCGTCCGTCTCGGGACGGAGCTCAGG
BMWN1_0024_D07.b : CTCTGGCCCAGCCGTCTTGGCTCAGTATCTGCAGGCGTCCGTCTCGGGACGGAGCTCAGG
SPL01_0023_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-000661 : GGAAGAGCGTGACTCCAGTTGAACGTGATAGTCGGTGCGTTGAGAGGAGACCCAGTCGGG
                   ---------+---------+---------+---------+---------+---------+ 306
ITT01_0070_E03.b : GGAAGAGCGTGACTCCAGTTGAACGTGATAGTCGGTGCGTTGAGAGGAGACCCAGTCGGG
ITT01_0003_H11.b : GGAAGAGCGTGACTCCAGTTGAACGTGATAGTCGGTGCGTTGAGAGGAGACCCAGTCGGG
SKNB1_0012_E06.b : GGAAGAGCGTGACTCCAGTTGAACGTGATAGTCGGTGCGTTGAGAGGAGACCCAGTCGGG
CLNT1_0027_B08.b : GGAAGAGCGTGACTCCAGTTGAACGTGATAGTCGGTGCGTTGAGAGGAGACCCAGTCGGG
CLNT1_0009_G10.b : GGAAGAGCGTGACTCCAGTTGAACGTGATAGTCGGTGCGTTGAGAGGAGACCCAGTCGGG
ITT01_0096_E12.b : GGAAGAGCGTGACTCCAGTTGAACGTGATAGTCGGTGCGTTGAGAGGAGACCCAGTCGGG
SPLT1_0093_H03.b : GGAAGAGCGTGACTCCAGTTGAACGTGATAGTCGGTGCGTTGAGAGGAGACCCAGTCGGG
BMWN1_0024_D07.b : GGAAGAGCGTGACTCCAGTTGAACGTGATAGTCGGTGCGTTGAGAGGAGACCCAGTCGGG
SPL01_0023_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxGTGATAGTCGGTGCGTTGAGAGGAGACCCAGTCGGG


20110601C-000661 : TGTCGAGTCAGAAGGGGCCCGGGGCCCGAGGCCCTGGGCAGGACGGCCCGTGCCCTGCAT
                   ---------+---------+---------+---------+---------+---------+ 366
ITT01_0070_E03.b : TGTTGAGTCAGAAGGGGCCCGGGGCCCGAGGCCCTGGGCAGGACGGCCCGTGCCCTGCAT
ITT01_0003_H11.b : TGTCGAGTCAGAAGGGGCCCGGGGCCCGAGGCCCTGGGCAGGACGGCCCGTGCCCTGCAT
SKNB1_0012_E06.b : TGTCGAGTCAGAAGGGGCCCGGGGCCCGAGGCCCTGGGCAGGACGGCCCGTGCCCTGCAT
CLNT1_0027_B08.b : TGTCGAGTCAGAAGGGGCCCGGGGCCCGAGGCCCTGGGCAGGACGGCCCGTGCCCTGCAT
CLNT1_0009_G10.b : TGTCGAGTCAGAAGGGGCCCGGGGCCCGAGGCCCTGGGCAGGACGGCCCGTGCCCTGCAT
ITT01_0096_E12.b : TGTCGAGTCAGAAGGGGCCTGGGGCCCGAGGCCCTGGGCAGGACGGCCCGTGCCCTGCAT
SPLT1_0093_H03.b : TGTCGAGTCAGAAGGGGCCCGGGGCCCGAGGCCCTGGGCAGGACGGCCCGTGCCCTGCAT
BMWN1_0024_D07.b : TGTCGAGTCAGAAGGGGCCCGGGGCCCGAGGCCCTGGGCAGGACGGCCCGTGCCCTGCAT
SPL01_0023_H01.b : TGTCGAGTCAGAAGGGGCCTGGGGCCCGAGGCCCTGGGCAGGACGGCCCGTGCCCTGCAT


20110601C-000661 : CACGGGCCCAGCGTCCTAGAGGCAGGACTCTGGTGGAGAGTGTGAGGGTGCCTGGGGCCC
                   ---------+---------+---------+---------+---------+---------+ 426
ITT01_0070_E03.b : CACGGGCCCAGCGTCCTAGAGGCAGGACTCTGGTGGAGAGTGTGAGGGTGCCTGGGGCCC
ITT01_0003_H11.b : CACGGGCCCAACGTCCTAGAGGCAGGACTCTGGTGGAGAGTGTGAGGGTGCCTGGGGCCC
SKNB1_0012_E06.b : CACGGGCCCAGCGTCCTAGAGGTTTGACTCTGGTGGAGAGTGTGAGGGTGCCTGGGGCCC
CLNT1_0027_B08.b : CACGGGCCCAGCGTCCTAGAGGCAGGACTCTGGTGGAGAGTGTGAGGGTGCCTGGGGCCC
CLNT1_0009_G10.b : CACGGGCCCAGCGTCCTAGAGGCAGGACTCTGGTGGAGAGTGTGAGGGTGCCTGGGGCCC
ITT01_0096_E12.b : CACGGGCCCAGCGTCCTAGAGGCAGGACTCTGGTGGAGAGTGTGAGGGTGCCTGGGGCCC
SPLT1_0093_H03.b : CACGGGCCCAGCGTCCTAGAGGCAGGACTCTGGTGGAGAGTGTGAGGGTGCCTGGGGCCC
BMWN1_0024_D07.b : CACGGGCCCAGCGTCCTAGAGGCAGGACTCTGGTGGAGAGTGTGAGGGTGCCTGGGGCCC
SPL01_0023_H01.b : CACGGGCCCAGCGTCCTAGAGGCAGGACTCTGGTGGAGAGTGTGAGGGTGCCTGGGGCCC


20110601C-000661 : CTCCGGAGCTGGGGCCGTGCGGTGCAGGTTGGGCTCTCGGCGCGGTGTTGGCTGTTTCTG
                   ---------+---------+---------+---------+---------+---------+ 486
ITT01_0070_E03.b : CTCCGGAGCTGGGGCCGTGCGGTGCAGGTTGGGCTCTCGGCGCGGTGTTGGCTGTTTCTG
ITT01_0003_H11.b : CTCCGGAGCTGGGGCCGTGCGGTGCAGGTTGGGCTCTCGGCGCGGTGTTGGCTGTTTCTG
SKNB1_0012_E06.b : CTCCGGAGCTGGGGCCGTGCGGTGCAGGTTGGGCTCTCGGCGCGGTGTTGGCTGTTTCTG
CLNT1_0027_B08.b : CTCCGGAGCTGGGGCCGTGCGGTGCAGGTTGGGCTCTCGGCGCGGTGTTGGCTGTTTCTG
CLNT1_0009_G10.b : CTCCGGAGCTGGGGCCGTGCGGTGCAGGTTGGGCTCTCGGCGCGGTGTTGGCTGTTTCTG
ITT01_0096_E12.b : CTCCGGAGCTGGGGCCGTGCGGTGCAGGTTGGGCTCTCGGCGCGGTGTTGGCTGTTTCTG
SPLT1_0093_H03.b : CTCCGGAGCTGGGGCCGTGCGGTGCAGGTTGGGCTCTCGGCGCGGTGTTGGCTGTTTCTG
BMWN1_0024_D07.b : CTCCGGAGCTGGGGCCGTGCGGTGCAGGTTGGGCTCTCGGCGCGGTGTTGGCTGTTTCTG
SPL01_0023_H01.b : CTCCGGAGCTGGGGCCGTGCGGTGCAGGTTGGGCTCTCGGCGCGGTGTTGGCTGTTTCTG


20110601C-000661 : CGGGATTTGGAGGAATTCTTCCAGTGATGGGAGTCGCCAGTGACCGGGCACCAGGCTGAG
                   ---------+---------+---------+---------+---------+---------+ 546
ITT01_0070_E03.b : CGGGATTTGGAGGAATTCTTCCAGTGATGGGAGTCGCCAGTGACCGAGCACCAGGCTGAG
ITT01_0003_H11.b : CGGGATTTGGAGGAATTCTTCCAGTGATGGGAGTCGCCAGTGACCGGGCACCAGGCTGAG
SKNB1_0012_E06.b : CGGGATTTGGAGGAATTCTTCCAGTGATGGGAGTCGCCAGTGACCGGGCACCAGGCTGAG
CLNT1_0027_B08.b : CGGGATTTGGAGGAATTCTTCCAGTGATGGGAGTCGCCAGTGACCGGGCACCAGGCTGAG
CLNT1_0009_G10.b : CGGGATTTGGAGGAATTCTTCCAGTGATGGGAGTCGCCAGTGACCGGGCACCAGGCTGAG
ITT01_0096_E12.b : CGGGATTTGGAGGAATTCTTCCAGTGATGGGAGTCGCCAGTGACCGGGCACCAGGCTGAG
SPLT1_0093_H03.b : CGGGATTTGGAGGAATTCTTCCAGTGATGGGAGTCGCCAGTGACCGGGCACCAGGCTGAG
BMWN1_0024_D07.b : CGGGATTTGGAGGAATTCTTCCAGTGATGGGAGTCGCCAGTGACCGGGCACCAGGCTGAG
SPL01_0023_H01.b : CGGGATTTGGAGGAATTCTTCCAGTGATGGGAGTCGCCAGTGACCGGGCACCAGGCTGAG


20110601C-000661 : AGCCAGTCTGCCCCGAAT**CT**CTTCCCCCTCGTCTCCTGCGTCAGCCCCCCGTCCGA
                   ---------+---------+---------+---------+---------+---------+ 602
ITT01_0070_E03.b : AGCCAGTCTGCCCCGAAT**CT**CTTCCCCCTCGTCTCCTGCGTCAGCCCCCCGTCCGA
ITT01_0003_H11.b : AGCCAGTCTGCCCCGAAT**CT**CTTCCCCCTCGTCTCCTGCGTCAGCCCCCCGTCCGA
SKNB1_0012_E06.b : AGCCAGTCTGCCCCGAAT**CT**CTTCCCCCTCGTCTCCTGCGTCAGCCCCCCGTCCGA
CLNT1_0027_B08.b : AGCCAGTCTGCCCCGAAT**CT**CTTCCCCCTCGTCTCCTGCGTCAGCCCCCCGTCCGA
CLNT1_0009_G10.b : AGCCAGTCTGCCCCGAAT**CT**CTTCCCCCTCGTCTCCTGCGTCAGCCCCCCGTCCGA
ITT01_0096_E12.b : AGCCAGTCTGCCCCGAAT**CT**CTACCCCCTCGTCTCCTGCGTCAGCCCCCCGTCCGA
SPLT1_0093_H03.b : AGCCAGTCTGCCCCGAAT**CT**CTTCCCCCTCGTCTCCTGCGTCAGCCCCCCGTCCGA
BMWN1_0024_D07.b : AGCCAGTCTGCCCCGAAT**CT**CTTCCCCCTCGTCTCCTGCGTCAGCCCCCCGTCCGA
SPL01_0023_H01.b : AGCCAGTCTGCCCCGAATTACTGGCTACCCCCTCGTCTCCTGCGTCAGCCCCCCGTCCGA


20110601C-000661 : TGAGAGCCTGGTGGCCCTGGGCTGCCTGGCCCGGGACTTCCTGCCCAGCTCCGTCACCTT
                   ---------+---------+---------+---------+---------+---------+ 662
ITT01_0070_E03.b : TGAGAGCCTGGTGGCCCTGGGCTGCCTGGCCCGGGACTTCCTGCCCAGCTCCGTCACCTT
ITT01_0003_H11.b : TGAGAGCCTGGTGGCCCTGGGCTGCCTGGCCCGGGACTTCCTGCCCAGCTCCGTCACCTT
SKNB1_0012_E06.b : TGAGAGCCTGGTGGCCCTGGGCTGCCTGGCCCGGGACTTCCTGCCCAGCTCCGTCACCTT
CLNT1_0027_B08.b : TGAGAGCCTGGTGGCCCTGGGCTGCCTGGCCCGGGACTTCCTGCCCAGCTCCGTCACCTT
CLNT1_0009_G10.b : TGAGAGCCTGGTGGCCCTGGGCTGCCTGGCCCGGGACTTCCTGCCCAGCTCCGTCACCTT
ITT01_0096_E12.b : TGAGAGCCTGGTGGCCCTGGGCTGCCTGGCCCGGGACTTCCTGCCCAGCTCCGTCACCTT
SPLT1_0093_H03.b : TGAGAGCCTGGTGGCCCTGGGCTGCCTGGCCCGGGACTTCCTGCCCAGCTCCGTCACCTT
BMWN1_0024_D07.b : TGAGAGCCTGGTGGCCCTGGGCTGCCTGGCCCGGGACTTCCTGCCCAGCTCCGTCACCTT
SPL01_0023_H01.b : TGAGAGCCTGGTGGCCCTGGGCTGCCTGGCCCGGGACTTCCTGCCCAGCTCCGTCACCTT


20110601C-000661 : CTCCTGGAACTACAAGAACAGCAGCAAGGTCAGCAGCCAGAACATCCAGGACTTCCCGTC
                   ---------+---------+---------+---------+---------+---------+ 722
ITT01_0070_E03.b : CTCCTGGAACTACAAGAACAGCAGCAAGGTCAGCAGCCAGAACATCCAGGACTTCCAGTC
ITT01_0003_H11.b : CTCCTGGAACTACAAGAACAGCAGCAAGGTCAGCAGCCAGAACATCCAGGACTTCCCGTC
SKNB1_0012_E06.b : CTCCTGGAACTACAAGAACAGCAGCAAGGTCAGCAGCCAGAACATCCAGGACTTCCCGTC
CLNT1_0027_B08.b : CTCCTGGAACTACAAGAACAGCAGCAAGGTCAGCAGCCAGAACATCCAGGACTTCCCGTC
CLNT1_0009_G10.b : CTCCTGGAACTACAAGAACAGCAGCAAGGTCAGCAGCCAGAACATCCAGGACTTCCCGTC
ITT01_0096_E12.b : CTCCTGGAACTACAAGAACAGCAGCAAGGTCAGCAGCCAGAACATCCAGGACTTCCCGTC
SPLT1_0093_H03.b : CTCCTGGAACTACAAGAACAGCAGCAAGGTCAGCAGCCAGAACATCCAGGACTTCCCGTC
BMWN1_0024_D07.b : CTCCTGGAACTACAAGAACAGCAGCAAGGTCAGCAGCCAGAACATCCAGGACTTCCCGTC
SPL01_0023_H01.b : CTCCTGGAACTACAAGAACAGCAGCAAGGTCAGCAGCCAGAACATCCAGGACTTCCCGTC


20110601C-000661 : CGTCCTGAGAGGCGGCAAGTACTTGGCCTCCTCCCGGGTGCTCCTACCCTCTGTGAGCAT
                   ---------+---------+---------+---------+---------+---------+ 782
ITT01_0070_E03.b : CGTCCTGAGAGGCGGCAAGTACTTGGCCTCCTCCCGGGTGCTCCTACCCTCTGTGAGCAT
ITT01_0003_H11.b : CGTCCTGAGAGGCGGCAAGTACTTGGCCTCCTCCCGGGTGCTCCTACCCTCTGTGAGCAT
SKNB1_0012_E06.b : CGTCCTGAGAGGCGGCAAGTACTTGGCCTCCTCCCGGGTGCTCCTACCCTCTGTGAGCAT
CLNT1_0027_B08.b : CGTCCTGAGAGGCGGCAAGTACTTGGCCTCCTCCCGGGTGCTCCTACCCTCTGTGAGCAT
CLNT1_0009_G10.b : CGTCCTGAGAGGCGGCAAGTACTTGGCCTCCTCCCGGGTGCTCCTACCCTCTGTGAGCAT
ITT01_0096_E12.b : CGTCCTGAGAGGCGGCAAGTACTTGGCCTCCTCCCGGGTGCTCCTACCCTCTGTGAGCAT
SPLT1_0093_H03.b : CGTCCTGAGAGGCGGCAAGTACTTGGCCTCCTCCCGGGTGCTCCTACCCTCTGTGAGCAT
BMWN1_0024_D07.b : CGTCCTGAGAGGCGGCAAGTACTTGGCCTCCTCCCGGGTGCTCCTACCCTCTGTGAGCAT
SPL01_0023_H01.b : CGTCCTGAGAGGCGGCAAGTACTTGGCCTCCTCCCGGGTGCTCCTACCCTCTGTGAGCAT


20110601C-000661 : CCCCCAGGACCCAGAGGCCTTCCTGGTGTGCGAGGTCCAGCACCCCAGTGGCACCAAGTC
                   ---------+---------+---------+---------+---------+---------+ 842
ITT01_0070_E03.b : CCCCCAGGACCCAGAAGCCTTCCTGGTGTGCGAGGTCCAGCACCCCAGTGGCACCAAGTC
ITT01_0003_H11.b : CCCCCAGGACCCAGAGGCCTTCCTGGTGTGCGAGGTCCAGCACCCCAGTGGCACCAAGTC
SKNB1_0012_E06.b : CCCCCAGGACCCAGAGGCCTTCCTGGTGTGCGAGGTCCAGCACCCCAGTGGCACCAAGTC
CLNT1_0027_B08.b : CCCCCAGGACCCAGAGGCCTTCCTGGTGTGCGAGGTCCAGCACCCCAGTGGCACCAAGTC
CLNT1_0009_G10.b : CCCCCAGGACCCAGAGGCCTTCCTGGTGTGCGAGGTCCAGCACCCCAGTGGCACCAAGTC
ITT01_0096_E12.b : CCCCCAGGACCCAGAGGCCTTCCTGGTGTGCGAGGTCCAGCACCCCAGTGGCACCAAGTC
SPLT1_0093_H03.b : CCCCCAGGACCCAAAGGCCTTCCTGGTGTGCGAGGTCCAGCACCCCAGTGGCACCAAGTC
BMWN1_0024_D07.b : CCCCCAGGACCCAGAGGCCTTCCTGGTGTGCGAGGTCCAGCACCCCAGTGGCAC*AAGTC
SPL01_0023_H01.b : CCCCCAGGACCCAGAGGCCTTCCTGGTGTGCGAGGTCCAGCACCCCAGTGGCACCAAGTC


20110601C-000661 : CGTGTCCATCTCTGGGCCAGTCGTAGAGGAGCAGCCCCCCGTCTTGAACATCTTCGTCCC
                   ---------+---------+---------+---------+---------+---------+ 902
ITT01_0070_E03.b : CGTGTCCATCTCTGGGCCAGTCGTAGAGGAGCAGCCCCCCGTCTTGAACATCTTCGTCCC
ITT01_0003_H11.b : CGTGTCCATCTCTGGGGCAGTCGTAGAGGAGCAGCCCCCCGTCTTGAACATCTTCGTCCC
SKNB1_0012_E06.b : CGTGTCCATCTCTGGGCCAGTCGTAGAGGAACAGCCCCCCGTCTTGAACATCTTCCTCCC
CLNT1_0027_B08.b : CGTGTCCATCTCTGGGGCCATCGTAGAGGAGCAACCCCCCGTTCTGAACATCTTCGTCCC
CLNT1_0009_G10.b : CGTGTCCATCTCTGGGCCAGTCGTAGAGGAGCAGCCCCCCGTCTTGAACATCTTCGTCCC
ITT01_0096_E12.b : CGTGTCCATCTCTGGGCCAGTCGTAGAGGAGCAGCCCCCCGTCTTGAACATCTTCGTCCC
SPLT1_0093_H03.b : CGTGTCCATCTCTGGGCCAGTCGTAAAGGAGCAACCCCCCGTCTTGAACATCTTCGTCCC
BMWN1_0024_D07.b : CGTGTCCATCTCTGGGCCAGTCGTAGAGAAGCA*CCCCCCGTCTTGAACTTCTTCGTCCC
SPL01_0023_H01.b : CGTGTCCATCTCTGGGCCAGTCGTAGAGGAGCAGCCCCCCGTCTTGAACATCTTCGTCCC


20110601C-000661 : CACCCGGGAGTCCTTCTCCAGTACTCCCCAGCGCACGTCCAAGCTCATCTGCCAGGCCTC
                   ---------+---------+---------+---------+---------+---------+ 962
ITT01_0070_E03.b : CACCCGGGAGTCTTTCTCCAGTACTCCCCAGCGCACGTCCAAACTCATCTTGCAGGCCTC
ITT01_0003_H11.b : CACCGGGGAGTCCTTCTCCAGTACTCCCCAGCGCACGTCCAAGCTCATCTGCCAGGCCTC
SKNB1_0012_E06.b : CACCCGGGAGTCCTTCTCCAGTACTCCCCAGCGCAAGTCCAAGCTCATCTGCCAGGCCTC
CLNT1_0027_B08.b : CACCCGGGAGTCCTTCTCCAGTACTCCCCAGCGCACGTCCAAGCTCATCTTGCCGGCCTC
CLNT1_0009_G10.b : CACCCGGGAGTCCTTCTCCAGTACTCCCCAGCGCACGTCCAAGCTCATCTGCCAGGCCTC
ITT01_0096_E12.b : CACCCGGGAGTCCTTCTCCAGTACTCCCCAGCGCACGTCCAAGCTCATCTGCCAGGCCTC
SPLT1_0093_H03.b : CACCCGGGAGTCCTTCTCCAGTACTCCCCAGCGCACGTCCAAGCTCATCTGCCCAGCCTC
BMWN1_0024_D07.b : CACCCGGGAAGTCTTCCCCATTATTCCCCAGCGCACGTCCAAACTCATCGGCAAGGCCTC
SPL01_0023_H01.b : CACCCGGGAGTCCTTCTCCAGTACTCCCCAGCGCACGTCCAAGCTCATCTGCCAGGCCTC


20110601C-000661 : AGA*CTTCAGCCCCAAGCAGATCTCCATGGCCTGGTT*CCGTGATGGGAAACGGGTGGTG
                   ---------+---------+---------+---------+---------+---------+ 1020
ITT01_0070_E03.b : AGA*CTCCACCCCCAAGCAAATCTCCATGGCCTGGTT*CCGTGAggagaacgggtgttgt
ITT01_0003_H11.b : AGA*CTTCAGCCC*AAGCAGATCTC*ATGGGCTGGTT*CCGTGATGGGAAA*GGGTGGTG
SKNB1_0012_E06.b : AGA*CTTCAGCCCCAACCAAATCTTCATGGCCTGGTT*TCGGGAATGGAAACGGGGGGGG
CLNT1_0027_B08.b : AGAACTTCAGCCCCAGCCAAATCTCAATGGCCTGGTTTCCGTGATGGGAACCGGGTGGTG
CLNT1_0009_G10.b : AAA*CTTCAGCCCCA*GCAGATCTCCATGGCCTGGnttcctgaaggggaaacgggtggtt
ITT01_0096_E12.b : AGA*CTTCAGCCCCAAGCAGATCTCCATGGCCTGGTTCCGTGATGGGAAACGGGGTGGTG
SPLT1_0093_H03.b : AAA*CTTCAGCCCCAgcaaaatctccaggcctggtttcgtaatgggaaagggtggtggtt
BMWN1_0024_D07.b : gaattcgcccccagcaaatttcctggcctggtttcctgaatggaaaagggtgggtgttgg
SPL01_0023_H01.b : AGA*CTTCAGCCCCAAGCAGATCTCCATGGCCTGGTT*CCGTGATGGGAAACGGGTGGTG


20110601C-000661 : TCTGGCGTCAGCACAGGCCCCGTGGAAACCCTACAGTCCAGGTCCGGTGACCTACAGGCT
                   ---------+---------+---------+---------+---------+---------+ 1080
ITT01_0070_E03.b : ctggcttcaacacaggccccggtgaaacccaacagccagtccggtgactaaagctccaca
ITT01_0003_H11.b : TCTGGCGTCAGCACAGCCCCCGTGGAAACCCTAagtccagtcgggggactaacagctcac
SKNB1_0012_E06.b : TCTGGCGTCAACACAGGCCCCGggaaaaacctaaccgtcagttcgggggacctaagggct
CLNT1_0027_B08.b : TCTTGGTTCCACACAGGCCCCGTGGAGACCCTACAGTCCAatcggtggacctacaggtcc
CLNT1_0009_G10.b : gtctggcgtcagccacagccccgctggaaaaccctaaagtccagttcgggggacttaagg
ITT01_0096_E12.b : TCTGGCGTCAGCACAGGCCCCGTGGAGACCCTACAGTCCAGGTCCGGTGACCTACAGGCT
SPLT1_0093_H03.b : ggggtcaccacggcccggtggaaacctaacatccagtccggtgacctacgggctccaacc
BMWN1_0024_D07.b : gcgtcaccaaaggcccgtggaaaaccctaagtcattccggggacctaaggcctccaagca
SPL01_0023_H01.b : TCT                                                        


20110601C-000661 : CCACAGCATGCTGACCGTCACGGAGTCCGAGTGGCTCAGCCAGAGCGTCTTTCACTGCCC
                   ---------+---------+---------+---------+---------+---------+ 1140
ITT01_0070_E03.b : caggctaaccgtcccggatccaatgggtcacccaaacgtcttccctgccggggaacaaaa
ITT01_0003_H11.b : aacatgctgaccgtcccgaagtcgagtggctcaaccaaacctctcccctgccaggtgaaa
SKNB1_0012_E06.b : cccaaccaagctgaaccgtcccggaatcccaatgt                        
CLNT1_0027_B08.b : ccaacatggtgaccgtccggaatccgatgggcccacccaaccgctttccttgcaggggga
CLNT1_0009_G10.b : ctcccaagcatgctgacgttcccggaacccaaggggttagccaaacggcttcccctggca
ITT01_0096_E12.b : CCACAGCATGCTGACCGTCACGGAGTCCGAGTGGCTCAGCCAGAGCGTCTTTCACTGCCC
SPLT1_0093_H03.b : atgtgaacgtcctggaatcgaggggttcacccgagctcttcactgccaggggacaaaggg
BMWN1_0024_D07.b : ggctaacctcacgagatcgaggggctcaccagaactctttcctgcgggggggacacaagg
SPL01_0023_H01.b :                                                             


20110601C-000661 : AGTGGAGCACAA................................................
                   ---------+---------+---------+---------+---------+---------+ 1152
ITT01_0070_E03.b : ggctaaatacgaaaaaacgtcctttggtgaccccaaaccaattccataacgttttccatt
ITT01_0003_H11.b : cccaagggctgacctcgaaaaaaacgtctttttgtgtacctcaatcccaattttccatac
SKNB1_0012_E06.b :                                                             
CLNT1_0027_B08.b : accaaagggttaaattcaaaaaaaaggtctcttgggacctcaatccaatttccatacagt
CLNT1_0009_G10.b : gggggaaccaaagggctgaaatccgagaaaaaccgttcttttgtgggacttcaattccat
ITT01_0096_E12.b : AGTGGAGCACAAggcctgaactacnnagagaacgggtcctcttgtgcacctcaattccat
SPLT1_0093_H03.b : ggtaatttaaaaaaaagggtcttttggtgccttcattccaatttcctaccgttttcgctg
BMWN1_0024_D07.b : gctaaatacaaaaaacccctctcttgtggcctcaatccaaatttcccttaggtttttcat
SPL01_0023_H01.b :                                                             


20110601C-000661 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1152
ITT01_0070_E03.b : gccctccttgtggaatttctcacaagggcaaattttgcggggagggccctcccagggaac
ITT01_0003_H11.b : acgttttccaatcgcccctctttcggggaattctctaccaatgggcaaattttcctccgg
SKNB1_0012_E06.b :                                                             
CLNT1_0027_B08.b : ttgcaattcccccccttgtggaatttctccaaaggggaaatttctgcgtgttgggccttc
CLNT1_0009_G10.b : tttcccaaacacgttttgccattgcccccctcttttgtggattttcccccacagggggaa
ITT01_0096_E12.b : ttctcaataacggtttggcaatggcccctccttggtgggattttcctaccaaatgggcca
SPLT1_0093_H03.b : gggccctttgtgggatttttcaaaattggaaattttggccgggcgggcctggcagaggga
BMWN1_0024_D07.b : ccccccttttggggatttccacaagtggcaatttcttctggacgggctttcaaggaaact
SPL01_0023_H01.b :                                                             


20110601C-000661 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1152
ITT01_0070_E03.b : ccatattcgcaccccgagagggagtaaaacattctcttttaatacacaaactctgccggg
ITT01_0003_H11.b : tgtagggcctc                                                
SKNB1_0012_E06.b :                                                             
CLNT1_0027_B08.b : ccgggagaccaatttctggcccggaaggagtttataacatttttttttaataccaggcct
CLNT1_0009_G10.b : aatttttgcgctggacaggggcctttcccaggaaaaacctcaatttctgtgaccccccag
ITT01_0096_E12.b : actttctgctgggtacggcctcgccccggggaagcctaaatttttggaaccccgggaggg
SPLT1_0093_H03.b : actccaattttggaccctggggggggttttaaaaatttctttttggaataacacagggct
BMWN1_0024_D07.b : aattttcgtacaccgggggaggtttaaacattttcttcttaaaataccagaccttggggg
SPL01_0023_H01.b :                                                             


20110601C-000661 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1152
ITT01_0070_E03.b : gaacctttttgaagagaaaaggaaatttgttgaaaccaaccccccttaaaacaa     
ITT01_0003_H11.b :                                                             
SKNB1_0012_E06.b :                                                             
CLNT1_0027_B08.b : ttcgccgggaaccccttggagagaggagggaattttgtggaccacaccccccataaaaac
CLNT1_0009_G10.b : ggggagagttttaaacactaattctctcc                              
ITT01_0096_E12.b : aggtgttaaaaacatttccttt                                     
SPLT1_0093_H03.b : ttgccggggggagctctcttgttgaagagaattggcagagtactgtggtgacaagtcgcg
BMWN1_0024_D07.b : gggaaccctttggtagaggggtggggagtctgggtgccacagcccctccataaattcaca
SPL01_0023_H01.b :                                                             


20110601C-000661 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1152
ITT01_0070_E03.b :                                                             
ITT01_0003_H11.b :                                                             
SKNB1_0012_E06.b :                                                             
CLNT1_0027_B08.b : ccaagaataatacctttttctccccaaaatagggtctctgttttc              
CLNT1_0009_G10.b :                                                             
ITT01_0096_E12.b :                                                             
SPLT1_0093_H03.b : ctcccgtaaaagttctcctcagcttctgatattgcttttgttcctcgggagcctgactat
BMWN1_0024_D07.b : agatatcatccttttctttccgccgaaaatagggtgttctcggctcccattttggtggag
SPL01_0023_H01.b :                                                             


20110601C-000661 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1152
ITT01_0070_E03.b :                                                             
ITT01_0003_H11.b :                                                             
SKNB1_0012_E06.b :                                                             
CLNT1_0027_B08.b :                                                             
CLNT1_0009_G10.b :                                                             
ITT01_0096_E12.b :                                                             
SPLT1_0093_H03.b : ggccccctctgtgatgt                                          
BMWN1_0024_D07.b : gtttaatggggcccccccttttggggagagagg                          
SPL01_0023_H01.b :