Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-000746

Sequence: [FASTA format sequence] AAGGCAGCTT TGACTGCGTG GGGGTATTTC CAGCTTTGTG GCTTTCACTT CCACTTCTCC CAGGTGGGCG GAGTGGCCTC CTGTGGACGA ATCAGATTGC TCCTCCGCCC CAACTTCAGG AGGCGAGCCC GGGGCTTGGG GTCCCAGACG TGCCGCCGCC GCCGCCACAG CAGCATCCGC AGCAGCAGCA GCAGCAGGAC GACTAGGAAA GACCCCAGGC CAGAACCATG GAGGACCAGC GCGACCTCAT CTCCAACCAT GAGCAGCTGC CCATGCTGGG CCAGCGCCCC GGGGCCCCGG AGAGCAAGTG CAGCCGTGGA GCTCTGTACA CAGGCTTTTC TGTCCTGGTG GCTCTGCTCC TGGCTGGCCA GGCCACCACC GCCTACTTCC TGTACCAGCA GCAGGGCCGG CTGGACAAGC TGACGGTCAC CTCTCAGAAC TTGCAGCTGG AGAGCCTGCG GATGAAGCTT CCCAAGCCCT CCAAGCCTTT GAGCAAGATG CGGGTTTCCG CCCCCATGCT GATGCAGGCC CTGCCCATGG AAGGCCCGGA GCCTATGCGC AACGCCACCA AGTACGGCAA CATGACCCAG GACCACGTGA TGCACCTGCT CCTGAAGTCT GACCCCCTGG GAGTGTACCC GAAGCTGAAG GGGAGCCTCC CAGAAAACCT GAAGCACCTC AAGAACACCA TGGACGGTGT GAACTGGAAG CTCTTTGAGA ACTGGCTGCG TCAGTGGCTC TTGTTTGAAA TGAGCAAGAA CTCGCTGGAG GAGACACCCT TTGAGGTTCC GCCAAAAGAC CCACTGGAGA CGGAGGACCT GTCGTCCGGG CTGGGCGTGA CCAAGCAGGA TCTCGGCCAA GTCATCCTGT AAGAGCAGCA GACGCCAGCC CCCAGCCCTG CGTGGCCACA GCTTGCCTGC CCCCCACCCT TCCTGCCGCC CCCACCTGCA CCCTCATCCA TGGGCCTCTG GCACCTGGCT CGCCGTCCTC CCTGGACACC TCACGTCTCT TCAGAAGGCC AAGGATGGAC GACACAGGGA GGCCCTGCTG CCCACAGCTC CATCCGCTAG CAGGAACACA GGGCCCCGGG GACAGCCCGT GAGCGGGGCT GGTGCACTCC TGACACCTGA GCTCCACATG GCG

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
CD74 HLA class II histocompatibility antigen gamma chain isoform b [Homo sapiens]. 308 5e-84 O

CD74 HLA class II histocompatibility antigen gamma chain isoform a [Homo sapiens]. 278 7e-75 O

CD74 HLA class II histocompatibility antigen gamma chain isoform c [Homo sapiens]. 187 1e-47 O

Locus	Definition	Score	E value	FL
CD74	HLA class II histocompatibility antigen gamma chain isoform b [Homo sapiens].	308	5e-84	O
CD74	HLA class II histocompatibility antigen gamma chain isoform a [Homo sapiens].	278	7e-75	O
CD74	HLA class II histocompatibility antigen gamma chain isoform c [Homo sapiens].	187	1e-47	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Cd74 H-2 class II histocompatibility antigen gamma chain isoform 2 [Mus musculus]. 296 3e-80 O

Cd74 H-2 class II histocompatibility antigen gamma chain isoform 1 [Mus musculus]. 260 2e-69 O

		Locus	Definition	Score	E value	FL
		Cd74	H-2 class II histocompatibility antigen gamma chain isoform 2 [Mus musculus].	296	3e-80	O
		Cd74	H-2 class II histocompatibility antigen gamma chain isoform 1 [Mus musculus].	260	2e-69	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC479329 PREDICTED: similar to HLA class II histocompatibility antigen, gamma chain (HLA-DR antigens associated invariant chain) (Ia antigen-associated invariant chain) (Ii) (p33) (CD74 antigen) [Canis familiaris]. 289 4e-78 O

		Locus	Definition	Score	E value	FL
		LOC479329	PREDICTED: similar to HLA class II histocompatibility antigen, gamma chain (HLA-DR antigens associated invariant chain) (Ia antigen-associated invariant chain) (Ii) (p33) (CD74 antigen) [Canis familiaris].	289	4e-78	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
CD74 CD74 antigen [Bos taurus]. 333 2e-91 O

		Locus	Definition	Score	E value	FL
		CD74	CD74 antigen [Bos taurus].	333	2e-91	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
CD74 CD74 antigen [Sus scrofa]. 394 e-110 O

		Locus	Definition	Score	E value	FL
		CD74	CD74 antigen [Sus scrofa].	394	e-110	O

Assembly Members: 6 TOP

Library Plate Loc. Read Name Accession Full Seq.

CLNT1 0023 G05 CLNT1_0023_G05.b FS658889
ITT01 0051 B10 ITT01_0051_B10.b BW980495
LNG01 0078 G02 LNG01_0078_G02.b BP439092
LNG01 0111 F09 LNG01_0111_F09.b BP438708
MLN01 0029 B06 MLN01_0029_B06.b BW963479
SPLT1 0035 G09 SPLT1_0035_G09.b HX241939

SNP: 1 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
299 C 2 0 0.333 W S CCC/P
G 4 0 0.667 CCG/P

Alignment: TOP

20110601C-000746 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LNG01_0078_G02.b : nnttttgcatggctaagacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LNG01_0111_F09.b :                     ttttttggttggactatgacxxxxxxxxxxxxxxxxxxxx
ITT01_0051_B10.b :                                                             
SPLT1_0035_G09.b :                                                             
CLNT1_0023_G05.b :                                                             
MLN01_0029_B06.b :                                                             


20110601C-000746 : ................AAGGCAGCTTTGACTGCGTGGGGGTATTTCCAGCTTTGTGGCTT
                   ---------+---------+---------+---------+---------+---------+ 44
LNG01_0078_G02.b : xxxxxxxxxxxxxxxxAAGGCAGCTTTGACTGCGTGGGGGTATTTCCAGCTTTGTGGCTT
LNG01_0111_F09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTCCAGCTTTGTGGCTT
ITT01_0051_B10.b :                                                       nnnggt
SPLT1_0035_G09.b :                                                             
CLNT1_0023_G05.b :                                                             
MLN01_0029_B06.b :                                                             


20110601C-000746 : TCACTTCCACTTCTCCCAGGTGGGCGGAGTGGCCTCCTGTGGACGAATCAGATTGCTCCT
                   ---------+---------+---------+---------+---------+---------+ 104
LNG01_0078_G02.b : TCACTTCCACTTCTCCCAGGTGGGCGGAGTGGCCTCCTGTGGACGAATCAGATTGCTCCT
LNG01_0111_F09.b : TCACTTCCACTTCTCCCAGGTGGGCGGAGTGGCCTCCTGTGGACGAATCAGATTGCTCCT
ITT01_0051_B10.b : gaaacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATTGCTCCT
SPLT1_0035_G09.b :                                   nnnnaagacggtacgaxxxxxxxxxx
CLNT1_0023_G05.b :                         ntttcgttcagctgtcggxxxxxxxxxxxxxxxxxx
MLN01_0029_B06.b :                          nnngggtaggacttgacagtttgtacxxxxxxxxx


20110601C-000746 : CCGCCCCAACTTCAGGAGGCGAGCCCGGGGCTTGGGGTCCCAGACGTGCCGCCGCCGCCG
                   ---------+---------+---------+---------+---------+---------+ 164
LNG01_0078_G02.b : CCGCCCCAACTTCAGGAGGCGAGCCCGGGGCTTGGGGTCCCAGACGTGCCGCCGCCGCCG
LNG01_0111_F09.b : CCGCCCCAACTTCAGGAGGCAAGCCCGGGGCTTGGGGTCCCAGACGTGCCGCCGCCGCCG
ITT01_0051_B10.b : CCGCCCCAACTTCAGGAGGCGAGCCCGGGGCTTGGGGTCCCAGACGTGCCGCCGCCGCCG
SPLT1_0035_G09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGTCCCAGACGTGCCGCCGCCGCCG
CLNT1_0023_G05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTCCCAGACGTGCCGCCGCCGCCG
MLN01_0029_B06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGACGTGCCGCCGCCGCCG


20110601C-000746 : CCACAGCAGCATCCGCAGCAGCAGCAGCAGCAGGACGACTAGGAAAGACCCCAGGCCAGA
                   ---------+---------+---------+---------+---------+---------+ 224
LNG01_0078_G02.b : CCAcagcagcatccgcagcagcagcagcagcagGACGACTAGGAAAGACCCCAGGCCAGA
LNG01_0111_F09.b : CCAcagcagcatccgcagcagcagcagcagcagGACGACTAGGAAAGACCCCAGGCCAGA
ITT01_0051_B10.b : CCAcagcagcatccgcagcagcagcagcagcagGACGACTAGGAAAGACCCCAGGCCAGA
SPLT1_0035_G09.b : CCAcagcagcatccgcagcagcagcagcagcagGACGACTAGGAAAGACCCCAGGCCAGA
CLNT1_0023_G05.b : CCAcagcagcatccgcagcagcagcagcagcagGACGACTAGGAAAGACCCCAGGCCAGA
MLN01_0029_B06.b : CCAcagcagcatccgcagcagcagcagcagcagGACGACTAGGAAAGACCCCAGGCCAGA


20110601C-000746 : ACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCATGCTGGGCCAG
                   ---------+---------+---------+---------+---------+---------+ 284
LNG01_0078_G02.b : ACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCATGCTGGGCCAG
LNG01_0111_F09.b : ACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCATGCTGGGCCAG
ITT01_0051_B10.b : ACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCATGCTGGGCCAG
SPLT1_0035_G09.b : ACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCATGCTGGGCCAG
CLNT1_0023_G05.b : ACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCATGCTGGGCCAG
MLN01_0029_B06.b : ACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCATGCTGGGCCAG


20110601C-000746 : CGCCCCGGGGCCCCGGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAGGCTTTTCTGTC
                   ---------+---------+---------+---------+---------+---------+ 344
LNG01_0078_G02.b : CGCCCCGGGGCCCCCGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAGGCTTTTCTGTC
LNG01_0111_F09.b : CGCCCCGGGGCCCCCGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAGGCTTTTCTGTC
ITT01_0051_B10.b : CGCCCCGGGGCCCCGGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAGGCTTTTCTGTC
SPLT1_0035_G09.b : CGCCCCGGGGCCCCGGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAGGCTTTTCTGTC
CLNT1_0023_G05.b : CGCCCCGGGGCCCCGGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAGGCTTTTCTGTC
MLN01_0029_B06.b : CGCCCCGGGGCCCCGGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAGGCTTTTCTGTC


20110601C-000746 : CTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAG
                   ---------+---------+---------+---------+---------+---------+ 404
LNG01_0078_G02.b : CTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAG
LNG01_0111_F09.b : CTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAG
ITT01_0051_B10.b : CTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAG
SPLT1_0035_G09.b : CTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAG
CLNT1_0023_G05.b : CTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAG
MLN01_0029_B06.b : CTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGTACCAGCAGCAG


20110601C-000746 : GGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGAGCCTGCGGATG
                   ---------+---------+---------+---------+---------+---------+ 464
LNG01_0078_G02.b : GGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGAGCCTGCGGATG
LNG01_0111_F09.b : GGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGAGCCTGCGGATG
ITT01_0051_B10.b : GGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGAGCCTGCGGATG
SPLT1_0035_G09.b : GGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGAGCCTGCGGATG
CLNT1_0023_G05.b : GGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGAGCCTGCGGATG
MLN01_0029_B06.b : GGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGAGCCTGCGGATG


20110601C-000746 : AAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCCCCATGCTGATG
                   ---------+---------+---------+---------+---------+---------+ 524
LNG01_0078_G02.b : AAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCCCCATGCTGATG
LNG01_0111_F09.b : AAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCCCCATGCTGATG
ITT01_0051_B10.b : AAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCCCCATGCTGATG
SPLT1_0035_G09.b : AAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCCCCATGCTGATG
CLNT1_0023_G05.b : AAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCCCCATGCTGATG
MLN01_0029_B06.b : AAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCCCCATGCTGATG


20110601C-000746 : CAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGTACGGCAACATG
                   ---------+---------+---------+---------+---------+---------+ 584
LNG01_0078_G02.b : CAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGTACGGCAACATG
LNG01_0111_F09.b : CAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGTACGGCAACATG
ITT01_0051_B10.b : CAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGTACGGCAACATG
SPLT1_0035_G09.b : CAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGTACGGCAACATG
CLNT1_0023_G05.b : CAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGTACGGCAACATG
MLN01_0029_B06.b : CAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGTACGGCAACATG


20110601C-000746 : ACCCAGGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAGTGTACCCGAAG
                   ---------+---------+---------+---------+---------+---------+ 644
LNG01_0078_G02.b : ACCCAGGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAGTGTACCCGAAG
LNG01_0111_F09.b : ACCCANGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAGTGTACCCGAAG
ITT01_0051_B10.b : ACCCAGGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAGTGTACCCGAAG
SPLT1_0035_G09.b : ACCCAGGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAGTGTACCCGAAG
CLNT1_0023_G05.b : ACCCAGGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAGTGTACCCGAAG
MLN01_0029_B06.b : ACCCAGGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAGTGTACCCGAAG


20110601C-000746 : CTGAAGGGGAGCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGGACGGTGTGAAC
                   ---------+---------+---------+---------+---------+---------+ 704
LNG01_0078_G02.b : CTGAAGGGGAGCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGGACGGTGTGAAC
LNG01_0111_F09.b : CTGAAGGGGAGCCTCCCAGAAAATCTGAAGCACCTCAAGAACACCATGGACGGTGTGAAC
ITT01_0051_B10.b : CTGAAGGGGAGCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGGACGGTGTGAAC
SPLT1_0035_G09.b : CTGAAGGGGAGCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGGACGGTGTGAAC
CLNT1_0023_G05.b : CTGAAGGGGAGCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGGACGGTGTGAAC
MLN01_0029_B06.b : CTGAAGGGGAGCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGGACGGTGTGAAC


20110601C-000746 : TGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGAGCAAGAACTCG
                   ---------+---------+---------+---------+---------+---------+ 764
LNG01_0078_G02.b : TGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGAGCAAGAACTCG
LNG01_0111_F09.b : TGGAAGCTCTTTGAAAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGAGCAAGAACTCG
ITT01_0051_B10.b : TGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGAGCAAGAACTCG
SPLT1_0035_G09.b : TGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGAGCAAGAACTCG
CLNT1_0023_G05.b : TGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGAGCAAGAACTCG
MLN01_0029_B06.b : TGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGAGCAAGAACTCG


20110601C-000746 : CTGGAGGAGACACCCTTTGAGGTTCCGCCAAAAGACCCACTGGAGACGGAGGACCTGTCG
                   ---------+---------+---------+---------+---------+---------+ 824
LNG01_0078_G02.b : CTGGAGGAGACACCCTTTGAGTTCCGCCCAAAAA**CCACTGGAAACGGAGGACCTGTCT
LNG01_0111_F09.b : CTTGAGGAGACACCCTTTGAGGTTCCCCCAAAAGACCCACTGGAGACGGAAGACCTGTCC
ITT01_0051_B10.b : CTGGAGGAGACACCCTTTGAGGTTCCGCCAAAAGACCCACTGGAGACGGAGGACCTGTCG
SPLT1_0035_G09.b : CTGGANGAGACACCCTTTGAGGTTCCGCCAAA**GACCACTGGAGACGGANGACCTGTCG
CLNT1_0023_G05.b : CTGGAGGAGACACCCTTTGAGGTTCCGCCAAAAGACCCACTGGAGACGGAGGACCTGTCG
MLN01_0029_B06.b : CTGGAGGAGACACCCTTTGAGGTTCCGCCAAAAGACCCACTGGAGACGGAGGACCTGTCG


20110601C-000746 : TCCGGGCTGGGCGTGACCAAGCAGGATCTCGGCCAAGTCATCCTGTAAGAGCAGCAGACG
                   ---------+---------+---------+---------+---------+---------+ 884
LNG01_0078_G02.b : TCCGGGCTGGGCGTGACCAAACAAGATCTCCGGCAAGTCATCCTGTAAGACaacagaagc
LNG01_0111_F09.b : TCCGGGCTTGGCGTGACCAANCANGATCTCCCGCCAATCATCCTGaaaaaacaccaaacc
ITT01_0051_B10.b : TCCGGGCTGGGCGTGACCAAGCAGGATCTCGGCCAAGTCATCCTGTAAGAGCAGCAGACG
SPLT1_0035_G09.b : TCCGGGCTGGGCGTGACCNAGCAGGATCTCNGCCNAGTCATCCTGGTAGAGCAGCAGACG
CLNT1_0023_G05.b : TCCGGGCTGGGCGTGACCAAGCAGGATCTCGGCCAAGTCATCCTGTAAGAGCAGCAGACG
MLN01_0029_B06.b : TCCGGGCTGGGCGTGACCAAGCAGGATCTCGGCCAAGTCATCCTGTAAGAGCAGCAGACG


20110601C-000746 : CCAGCCCCCAGCCCTGCGTGGCCACAGCTTGCCTGCCCCCCACCCTTCCTGCCGCCCCCA
                   ---------+---------+---------+---------+---------+---------+ 944
LNG01_0078_G02.b : cacccccaacccttgctggcaacacttgcctgccccaaccttcctggcgccccacctgga
LNG01_0111_F09.b : cagccccccaccctgcgtggccccaacttggcggcccccaccctcctgcccccccccctg
ITT01_0051_B10.b : CCAGCCCCCAGCCCTGCGTGGCCACAGCTTGGCTGCCCCCCACCCTCCCTGCCGCCCCCA
SPLT1_0035_G09.b : CCA*CCCCCCGCCCTGCGTGGC*ACAGCTTGCTTGCCCCCaccttcctgccgcccccact
CLNT1_0023_G05.b : CCAGCCCCCAGCCCTGCGTGGCCACAGCTTGCCTGGCCCCCCACCCTCCTGGCGCCCCCA
MLN01_0029_B06.b : CCAGCCCCCAGCCCTGCGTGGCCACAGCTTGGCTGGCCCCCACCNNTCCTGGCGCCCCCA


20110601C-000746 : CCTGCACCCTCATCCATGGGCCTCTGGCACCTGGCTCGCCGTCCTCCCTGGACACCTCAC
                   ---------+---------+---------+---------+---------+---------+ 1004
LNG01_0078_G02.b : ccttatccatgggcctctggacctggatcccctcccccctggaacactagttctttcaaa
LNG01_0111_F09.b : aatttatcccttgggccctggcacctgctcgccgacaccctgggaactcncgtccttcaa
ITT01_0051_B10.b : CCTGCACCCTCATCCATGGGCCTCTGGGCACTGGCTCGCCGTCCTCCCTGGACACCTCAC
SPLT1_0035_G09.b : ggacttcttccatgggcctctgcactggctcgcgtcttcctggacccttagttccttcaa
CLNT1_0023_G05.b : CCTGCACCCTCATCCATGGGCCTCTGGCACCTGGCTCGCCGTCCTCCCTGGACACCTCAC
MLN01_0029_B06.b : CCTGCACCCTCATCCATGGGCCTCTGGGCACTGGCTCGNCGTCCTCCCTGGACACCTCAC


20110601C-000746 : GTCTCTTCAGAAGGCCAAGGATGGACGACACAGGGAGGCCCTGCTGCCCACAGCTCCATC
                   ---------+---------+---------+---------+---------+---------+ 1064
LNG01_0078_G02.b : agccagaaagaacaacacgggaggcctgttgcccaagtccctcccttaaaggacaagggc
LNG01_0111_F09.b : aagccaagtaaaataaacaggnagcccctntgcccnatttcctccctnacaagaaacnng
ITT01_0051_B10.b : GTCTCTTCAGAAGGCCANGGGATGACGACACAGGGAGGCCCTGCTGCCNACAGCTCCCAT
SPLT1_0035_G09.b : aaggcaagagaacaaacaggagggcctggtcccaaattcatcccataaaggacaaggccc
CLNT1_0023_G05.b : GTCTCTTCAGAAGGCCAA*GATGAACGACACAGGGAGGCCCTGCTGCCCACAGCTCCATC
MLN01_0029_B06.b : GTCTCTTCAGAAGGC*AAGGATGAACGACACAGGGAAGGCCTGCTGCCCACAGCTCCATC


20110601C-000746 : CGCTAGCAGGAACACAGGGCCCCGGGGA*CAGCCCGTGAGCGGGGCTGGTGCAC*TCCTG
                   ---------+---------+---------+---------+---------+---------+ 1122
LNG01_0078_G02.b : cccgggacacccttagcggttggtgccctccgaaccttaatcccaaaggggcgtgtcagt
LNG01_0111_F09.b : cccccggaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
ITT01_0051_B10.b : CGCTAGCANG*ACACAGGGCCCCGGGGA*CAGCCCGGNAGCGGGGCTGGTGCAC*TCCTG
SPLT1_0035_G09.b : cgggaacccgtgaagggggtgggccctccgacccttgactccaagggggggtctgagtga
CLNT1_0023_G05.b : CGCTAGCAAGGACACAGGGCCCCGGGGAACAGCCCGTGAGCGGGGCTGGGGCCCCTCCTG
MLN01_0029_B06.b : CGCTAGCAGGAACACAGGCCCCCGGGAA**AGCCCGTGAGCGGGGCTGGTGCAC*TCCTG


20110601C-000746 : ACACCT*GAGCTCCACATGGCG......................................
                   ---------+---------+---------+---------+---------+---------+ 1143
LNG01_0078_G02.b : ataaggggaattcgaaggacagtccccctaccaacacccatggcacatgctcatccccct
LNG01_0111_F09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
ITT01_0051_B10.b : ACACCT*GAGCTCCACtgcgtgncccccnnagaaaagaggcggagnnnncnn       
SPLT1_0035_G09.b : aggggggagnctnnngt                                          
CLNT1_0023_G05.b : ACCCCTTGAACTCCACATGGCGgctgtcctggaataagggggcaggtcctggggacgggt
MLN01_0029_B06.b : ACACCT*GAGCTCCACATGGCgctgcagggattaaagggggaaagtnncngggaanggtn


20110601C-000746 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1143
LNG01_0078_G02.b : gtgtcccgctctctcccttgcgcgaaagataccccattattcctagaaccaccactgttc
LNG01_0111_F09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
ITT01_0051_B10.b :                                                             
SPLT1_0035_G09.b :                                                             
CLNT1_0023_G05.b : ccccccaatcccaaacccccaaaggaaagcttgggggtcccccccgggggcctcatttcc
MLN01_0029_B06.b : nnnttaattaaaaccccaaagggaagcttgtgtgtcccccccggggggcctagcttcctg


20110601C-000746 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1143
LNG01_0078_G02.b : agaagtcgacgcactcgttgaataacactttactcctgcgcgtatttaaacagcctcatg
LNG01_0111_F09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
ITT01_0051_B10.b :                                                             
SPLT1_0035_G09.b :                                                             
CLNT1_0023_G05.b : gggccttatcggggaaaaggccaacctttgtgtgcccagaatgaccaccaggcccctctc
MLN01_0029_B06.b : gcccttcacggggaaaaggccaagccttgtggttcccataatgcaccagagccccttact


20110601C-000746 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1143
LNG01_0078_G02.b : caacaacacacagatcttctccatatatctgcccgcgttatc                 
LNG01_0111_F09.b : nnnnnnnnnnnnnnnnnnn                                        
ITT01_0051_B10.b :                                                             
SPLT1_0035_G09.b :                                                             
CLNT1_0023_G05.b : ccctgggcgccaatatttggggaaaaggggtggtcacccgggccggttttgtgaaatagg
MLN01_0029_B06.b : ccgggccncccaattttgggaaataggggcgtcacacccggccggttttgggaataaggg


20110601C-000746 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1143
LNG01_0078_G02.b :                                                             
LNG01_0111_F09.b :                                                             
ITT01_0051_B10.b :                                                             
SPLT1_0035_G09.b :                                                             
CLNT1_0023_G05.b : gtggtgggacaaaaaaaaaaaaaaaaaaaaagcgctttttcaattgtggcccccaaataa
MLN01_0029_B06.b : tggtgggaaaaaatattacatattataaaaanatggcccagtttctgtgggggggcctta


20110601C-000746 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1143
LNG01_0078_G02.b :                                                             
LNG01_0111_F09.b :                                                             
ITT01_0051_B10.b :                                                             
SPLT1_0035_G09.b :                                                             
CLNT1_0023_G05.b : aaaaaccccccccccgacaa                                       
MLN01_0029_B06.b : aatcctggggcgatttt