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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-000815

Length: 907

Sequence:  [FASTA format sequence]
CTCCTCTTCT CTGGTTCCCT CATCCATGAC CTCTCATCTC TCTGTCCCTT CCTCAGGCAT
CAGAACCTAG TTTACCAGGC GTGAGGCCGG AGGTGCTGCC ATGGCACCCC TGAGGCCCCT
TCTGATGCTG GCCCTGCTGG CATGGGTTGC TCTGGCTGAC CAAGGTGCGG GAGGATATGG
ATATTGGTGA CCATTTGGGT CAATGTAGGG TGGGTAAGTG TGGCCTGGCC TGGGCGGTGC
CAGCTGTCAT ACTCCCTCTC CACAGAGTCG TGCAAGGGCC GCTGCACAGA CGGCTTCATT
GCCGAAAGGA AGTGTCAGTG TGACGAGCTG TGCTCTTACT ACCAGAGCTG CTGCACTGAC
TACGTGGCCG AGTGCAAGCC CCAAGGTGCG TTCAGAGGGG CTGGGCGGGC CTGGGGTCCC
CTCTGCAGCT GGAGACTCAC CACCCCCCTC TTTGTCTGCA GTGACTCGCG GGGATGTATT
CCTTCAGCCA GATGATGAGT ACAGGGCCTA TGACTACCAC GAGGAGACCA GACACAACAC
CAGCGTCCAA GAAGAGCAGA GGATCCCTGT CCTGCTGGCC AAGACTGAAG AGACTCCGGT
TCTGAAACCT GAGGAAGAGG CCCCACCACC TGGGCCTCAG ACTGATGATC TAGGGGTCTC
TGAGGAAGAG CTGTGCAGTG GGAAACCCTT TGATGCCTTC ACCAACCTCA AGAACGGTTC
CGTCTTTGCC TTCCGAGGTG ACTGGAATGG CAGACCTTGG GACTAGGGTC TGCCGCAGGA
GCATCCTGCC TCACACGGCC TCCCTTCCTC TAGGGCTGTA CTGCTATGAG CTGGATGAAA
AGGCAGTGAG GCCTGGGTAC CCCAAGCTCA TCCAAGATGT CTGGGGGGCA TCAAGGGCCC
CATTGAT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		VTN	vitronectin precursor [Homo sapiens].	98.6	5e-51	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Vtn	vitronectin precursor [Mus musculus].	92	3e-48	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC480621	PREDICTED: similar to Vitronectin precursor (Serum spreading factor) (S-protein) (V75) isoform 3 [Canis familiaris].	97.8	2e-51	O
		LOC480621	PREDICTED: similar to Vitronectin precursor (Serum spreading factor) (S-protein) (V75) isoform 2 [Canis familiaris].	97.8	2e-51	O
		LOC480621	PREDICTED: similar to Vitronectin precursor (Serum spreading factor) (S-protein) (V75) isoform 1 [Canis familiaris].	97.8	2e-51	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		VTN	vitronectin [Bos taurus].	101	5e-52	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		VTN	vitronectin precursor [Sus scrofa].	193	2e-83	O

Alignment:      TOP

20110601C-000815 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LVRM1_0007_C09.b :         xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0071_D11.b : gttgaacttttcagcttggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0092_H09.b :          gccxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0088_B10.b :                                               gccxxxxxxxxxxx


20110601C-000815 : .............CTCCTCTTCTCTGGTTCCCTCATCCATGACCTCTCATCTCTCTGTCC
                   ---------+---------+---------+---------+---------+---------+ 47
LVRM1_0007_C09.b : xxxxxxxxxxxxxCTCCTCTTCTCTGGTTCCCTCATCCATGACCTCTCATCTCTCTGTCC
LVR01_0071_D11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCATGACCTCTCATCTCTCTGTCC
LVR01_0092_H09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCATGACCTCTCATCTCTCTGTCC
LVR01_0088_B10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-000815 : CTTCCTCAGGCATCAGAACCTAGTTTACCAGGCGTGAGGCCGGAGGTGCTGCCATGGCAC
                   ---------+---------+---------+---------+---------+---------+ 107
LVRM1_0007_C09.b : CTTCCTCAGGCATCAGAACCTAGTTTACCAGACGTGAGGCCGGAGGTGCTGCCATGGCAC
LVR01_0071_D11.b : CTTCCTCAGGCATCAGAACCTAGTTTACCAGACGTGAGGCCGGAGGTGCTGCCATGGCAC
LVR01_0092_H09.b : CTTCCTCAGGCATCAGAACCTAGTTTACCAGGCGTGAGGCCGGAGGTGCTGCCATGGCAC
LVR01_0088_B10.b : xxxxxxxxxxxxTCAGAACCTAGTTTACCAGGCGTGAGGCCGGAGGTGCTGCCATGGCAC


20110601C-000815 : CCCTGAGGCCCCTTCTGATGCTGGCCCTGCTGGCATGGGTTGCTCTGGCTGACCAAGGTG
                   ---------+---------+---------+---------+---------+---------+ 167
LVRM1_0007_C09.b : CCCTGAGGCCCCTTCTGATGCTGGCCCTGCTGGCATGGGTTGCTCTGGCTGACCAAGGTG
LVR01_0071_D11.b : CCCTGAGGCCCCTTCTGATGCTGGCCCTGCTGGCATGGGTTGCTCTGGCTGACCAAGGTG
LVR01_0092_H09.b : CCCTGAGGCCCCTTCTGATGCTGGCCCTGCTGGCATGGGTTGCTCTGGCTGACCAAGGTG
LVR01_0088_B10.b : CCCTGAGGCCCCTTCTGATGCTGGCCCTGCTGGCATGGGTTGCTCTGGCTGACCAAGGTG


20110601C-000815 : CGGGAGGATATGGATATTGGTGACCATTTGGGTCAATGTAGGGTGGGTAAGTGTGGCCTG
                   ---------+---------+---------+---------+---------+---------+ 227
LVRM1_0007_C09.b : CGGGAGGATATGGATATTGGTGACCATTTGGGTCAATGTAGGGTGGGTAAGTGTGGCCTG
LVR01_0071_D11.b : CGGGAGGATATGGATATTGGTGACCATTTGGGTCAATGTAGGGTGGGTAAGTGTGGCCTG
LVR01_0092_H09.b : CGGGAGGATATGGATATTGGTGACCATTTGGGTCAATGTAGGGTGGGTAAGTGTGGCCTG
LVR01_0088_B10.b : CGGGGGGATATGGATATTGGTGACCATTTGGGTCAATGTAGGGTGGGTAAGTGTGGCCTG


20110601C-000815 : GCCTGGGCGGTGCCAGCTGTCATACTCCCTCTCCACAGAGTCGTGCAAGGGCCGCTGCAC
                   ---------+---------+---------+---------+---------+---------+ 287
LVRM1_0007_C09.b : GCCTGGGCGGTGCCAGCTGTCATACTCCCTCTCCACAGAGTCGTGCAAGGGCCGCTGCAC
LVR01_0071_D11.b : GCCTGGGCGGTGCCAGCTGTCATACTCCCTCTCCACAGAGTCGTGCAAGGGCCGCTGCAC
LVR01_0092_H09.b : GCCTGGGCGGTGCCAGCTGTCATACTCCCTCTCCACAGAGTCGTGCAAGGGCCGCTGCAC
LVR01_0088_B10.b : GCCTGGGCGGTGCCAGCTGTCATACTCCCTCTCCACAGAGTCGTGCAAGGGCCGCTGCAC


20110601C-000815 : AGACGGCTTCATTGCCGAAAGGAAGTGTCAGTGTGACGAGCTGTGCTCTTACTACCAGAG
                   ---------+---------+---------+---------+---------+---------+ 347
LVRM1_0007_C09.b : AGACGGCTTCATTGCCGAAAGGAAGTGTCAGTGTGACGAGCTGTGCTCTTACTACCAGAG
LVR01_0071_D11.b : AGACGGCTTCATTGCCGAAAGGAAGTGTCAGTGTGACGAGCTGTGCTCTTACTACCAGAG
LVR01_0092_H09.b : AGACGGCTTCATTGCCGAAAGGAAGTGTCAGTGTGACGAGCTGTGCTCTTACTACCAGAG
LVR01_0088_B10.b : AGACGGCTTCATTGCCGAAAGGAAGTGTCAGTGTGACGAGCTGTGCTCTTACTACCAGAG


20110601C-000815 : CTGCTGCACTGACTACGTGGCCGAGTGCAAGCCCCAAGGTGCGTTCAGAGGGGCTGGGCG
                   ---------+---------+---------+---------+---------+---------+ 407
LVRM1_0007_C09.b : CTGCTGCACTGACTACGTGGCCGAGTGCAAGCCCCAAGGTGCGTTCAGAGGGGCTGGGCG
LVR01_0071_D11.b : CTGCTGCACTGACTACGTGGCCGAGTGCAAGCCCCAAGGTGCGTTCAGAGGGGCTGGGCG
LVR01_0092_H09.b : CTGCTGCGCCGACTACGTGGCCGAGTGCAAGCCCCAAGGTGCGTTCAGAGGGGCTGGGCG
LVR01_0088_B10.b : CTGCTGCGCCGACTACGTGGCCGAGTGCAAGCCCCAAGGTGCGTTCAGAGGGGCTGGGCG


20110601C-000815 : GGCCTGGGGTCCCCTCTGCAGCTGGAGACTCACCACCCCCCTCTTTGTCTGCAGTGACTC
                   ---------+---------+---------+---------+---------+---------+ 467
LVRM1_0007_C09.b : GGCCTGGGGTCCCCTCTGCAGCTGGAGACTCACCACCCCCCTCTTTGTCTGCAGTGACTC
LVR01_0071_D11.b : GGCCTGGGGTCCCCTCTGCAGCTGGAGACTCACCACCCCCCTCTTTGTCTGCAGTGACTC
LVR01_0092_H09.b : GGCCTGGGGTCCCCTCTGCAGCTGGAGACTCACCACCCCCCTCCTTGTCTGCAGTGACTC
LVR01_0088_B10.b : GGCCTGGGGTCCCCTCTGCAGCTGGAGACTCACCACCCCCCTCCTTGTCTGCAGTGACTC


20110601C-000815 : GCGGGGATGTATTCCTTCAGCCAGATGATGAGTACAGGGCCTATGACTACCACGAGGAGA
                   ---------+---------+---------+---------+---------+---------+ 527
LVRM1_0007_C09.b : GCGGGGATGTATTCCTTCAGCCAGATGATGAGTACAGGGCCTATGACTACCACGAGGAGA
LVR01_0071_D11.b : GCGGGGATGTATTCCTTCAGCCAGATGATGAGTACAGGGCCTATGACTACCACGAGGAGA
LVR01_0092_H09.b : GCGGGGATGTATTCCTTCAGCCAGATGATGAGTACAGGGCCTATGACTACCACGAGGAGA
LVR01_0088_B10.b : GCGGGGATGTATTCCTTCAGCCAGATGATGAGTACAGGGCCTATGACTACCACGAGGAGA


20110601C-000815 : CCAGACACAACACCAGCGTCCAAGAAGAGCAGAGGATCCCTGTCCTGCTGGCCAAGACTG
                   ---------+---------+---------+---------+---------+---------+ 587
LVRM1_0007_C09.b : CCAGACACAACACCAGCGTCCAAGAAGAGCAGAGGATCCCTGTCCTGCTGGCCAAGACTG
LVR01_0071_D11.b : CCAGACACAACACCAGCGTCCAAGAAGAGCAGAGGATCCCTGTCCTGCTGGCCAAGACTG
LVR01_0092_H09.b : CCAGACACAACACCAGCGTCCAAGAAGAGCAGAGGATCCCTGTCCTGCTGGCCAAGACTG
LVR01_0088_B10.b : CCAGACACAACACCAGCGTCCAAGAAGAGCAGAGGATCCCTGTCCTGCTGGCCAAGACTG


20110601C-000815 : AAGAGACTCCGGTTCTGAAACCTGAGGAAGAGGCCCCACCACCTGGGCCTCAGACTGATG
                   ---------+---------+---------+---------+---------+---------+ 647
LVRM1_0007_C09.b : AAGAGACTCCGGTTCTGAAACCTGAGGAAGAGGCCCCACCACCTGGGCCTCAGACTGATG
LVR01_0071_D11.b : AAGAGACTCCGGTTCTGAAACCTGAGGAAGAGGCCCCACCACCTGGGCCTCAGACTGATG
LVR01_0092_H09.b : AAGAGACTCCGGTTCTGAAACCTGAGGAAGAGGCCCCACCACCTGGGCCTCAGACTGATG
LVR01_0088_B10.b : AAGAGACTCCGGTTCTGAAACCTGAGGAAGAGGCCCCACCACCTGGGCCTCAGACTGATG


20110601C-000815 : ATCTAGGGGTCTCTGAGGAAGAGCTGTGCAGTGGGAAACCCTTTGATGCCTTCACCAACC
                   ---------+---------+---------+---------+---------+---------+ 707
LVRM1_0007_C09.b : ATCTAGTGGTCCCTGAGGAAGAGCTGGGCAGTGGGAAACCCTTGGATGCCTT*ACCAACC
LVR01_0071_D11.b : ATCTAGGGGTCCCTGAGGAAGAGCTGTGCAGTGGGAAACCCTTTGATGCCTTCACCAACC
LVR01_0092_H09.b : ATCTAGGGGTCTCTGAGGAAGAGCTGTGCAGTGGGAAACCCTTTGATGCCTTCACCAACC
LVR01_0088_B10.b : ATCTAGGGGTCTCTGAGGAAGAGCTGTGCAGTGGGAAACCCTTTGATGCCTTCACCAACC


20110601C-000815 : TCAAGAACGGTTCCGTCTTTGCCTTCCGAGGTGACTGGAATGGCAGACCTTGGGACTAGG
                   ---------+---------+---------+---------+---------+---------+ 767
LVRM1_0007_C09.b : TTAAGAACGGTTC*GTCTTTGCCTTCCGAGGTGACTGGAATGGCt              
LVR01_0071_D11.b : TCAAGAACGGTTCCGTCTTTGCCTTCCGAGGTGACTGGAATGGCAGACCTTGGGACTAGG
LVR01_0092_H09.b : TCAAGAACGGTTCCGTCTTTGCCTTCCGAGGTGACTGGAATGGCAGACCTTGGGACTAGG
LVR01_0088_B10.b : TCAAGAACGGTTCCGTCTTTGCCTTCCGAGGTGACTGGAATGGCAGACCTTGGGACTAGG


20110601C-000815 : GTCTGCCGCAGGAGCATCCTGCCTCACACGGCCTCCCTTCCTCTAGGGCTGTACTGCTAT
                   ---------+---------+---------+---------+---------+---------+ 827
LVRM1_0007_C09.b :                                                             
LVR01_0071_D11.b : GTCTGCCGCAGGAGCATCCTGCCTCACACGGCCTCCCTTCCTCTTAGACTGTACTGCTAT
LVR01_0092_H09.b : GTCTGCCGCAGGAGCATCCTGCCTCACACGGCCTCCCTTCCTCTAGGGCTGTACTGCTAT
LVR01_0088_B10.b : GTCTGCCGCAGGAGCATCCTGCCTCACACGGCCTCCCTTCCTCTAGGGCTGTACTGCTAT


20110601C-000815 : GAGCTGGATGAAAAGGCAGTGAGGCCTGGGTACCCCAAGCTC*ATCCAAGATGTCTGGGG
                   ---------+---------+---------+---------+---------+---------+ 886
LVRM1_0007_C09.b :                                                             
LVR01_0071_D11.b : GAGCTGGATGAAAAGGCAATGAGGCCCTGGTACCCCAAGCTC*ATCCAAGATGTCTGGGG
LVR01_0092_H09.b : GAGCTGGATGAAAAGGCAGTGAGGCCTGGGTACCCCAAGCTC*ATCCAAGATGTCTGGGG
LVR01_0088_B10.b : GAGCTGGGTGAAAAGGCAGTGAGGCCTGGGTACCCCAAGCTCCATCCAAAATGTCTGGGG


20110601C-000815 : GGCATCAAGGGCCCCATTGAT.......................................
                   ---------+---------+---------+---------+---------+---------+ 907
LVRM1_0007_C09.b :                                                             
LVR01_0071_D11.b : catcaagggccccattgattccgccttcccccgcctcaactgttaggggaaaacctacct
LVR01_0092_H09.b : **CATCAGGGGCCCCATTGATgccgccttcacccgcatcaactgtcaagggagaacctac
LVR01_0088_B10.b : GGCATCAAGGGCCCCATTGATtgccgcctttcaccccgcaccaactgtcagggggaagac


20110601C-000815 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 907
LVRM1_0007_C09.b :                                                             
LVR01_0071_D11.b : cttcaagggacccagcccaggggctgtggggtcagggttcaagcttttcctcacccggg
LVR01_0092_H09.b : ctcttcaaggtaccagcccaagggctgtgggtcaggggtcaaggcctttctccaccaggg
LVR01_0088_B10.b : ctacctttttccaggtaccagccccaagggcttgtgggtcaagggtcaaaggctatcctc


20110601C-000815 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 907
LVRM1_0007_C09.b :                                                             
LVR01_0071_D11.b :                                                             
LVR01_0092_H09.b : ctttgagggctactatgccccagaacctgaatgggcccaaaagggtgggatccccgccct
LVR01_0088_B10.b : acccaggggctttgagggcttactatgccccaggaacctgaattggggccagaaagggct


20110601C-000815 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 907
LVRM1_0007_C09.b :                                                             
LVR01_0071_D11.b :                                                             
LVR01_0092_H09.b : gggggtccccggcctggggaacttttttggggaaaattaaaaacccccaaaggggctccc
LVR01_0088_B10.b : gggattcccacccctgggggtcccccctgggttgggaaactctttttggggaaaataaaa


20110601C-000815 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 907
LVRM1_0007_C09.b :                                                             
LVR01_0071_D11.b :                                                             
LVR01_0092_H09.b : ggggtcctttgggggcaaaaaaaccccccggggggaaaaatagggggcctggccctgccc
LVR01_0088_B10.b : aaaaccccccaaggggctccccgcggttctttggggggcaaaacacaaaccccctggggg


20110601C-000815 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 907
LVRM1_0007_C09.b :                                                             
LVR01_0071_D11.b :                                                             
LVR01_0092_H09.b : cccctttgtgtggggggggtggaagagggaaaaccct                      
LVR01_0088_B10.b : aaaaaaaaaggggggctttgtccctttcccccttttttgggggggggggggagagaagag


20110601C-000815 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 907
LVRM1_0007_C09.b :                                                             
LVR01_0071_D11.b :                                                             
LVR01_0092_H09.b :                                                             
LVR01_0088_B10.b : aaaaccttcttttcgcccccccccccccccccccccccccca