Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-001649

Sequence: [FASTA format sequence] GGCTGCTCCC TAAGGCAGCT TTGACTGCGT GGGGGTATTT CCAGCTTTGT GGCTTTCACT TCCACTTCTC CCAGGTGGGC GGAGTGGCCT CCTGTGGACG AATCAGATTG CTCCTCCGCC CCAACTTCAG GAGGCGAGCC CGGGGCTTGG GGTCCCAGAC GTGCCGCCGC CGCCGCCACA GCAGCATCCG CAGCAGCAGC AGCAGCAGGA CGACTAGGAA AGACCCCAGG CCAGAACCAT GGAGGACCAG CGCGACCTCA TCTCCAACCA TGAGCAGCTG CCCATGCTGG GCCAGCGCCC CGGGGCCCCG GAGAGCAAGT GCAGCCGTGG AGCTCTGTAC ACAGGCTTTT CTGTCCTGGT GGCTCTGCTC CTGGCTGGCC AGGCCACCAC CGCCTACTTC CTGTACCAGC AGCAGGGCCG GCTGGACAAG CTGACGGTCA CCTCTCAGAA CTTGCAGCTG GAGAGCCTGC GGATGAAGCT TCCCAAGCCC TCCAAGCCTT TGAGCAAGAT GCGGGTTTCC GCCCCCATGC TGATGCAGGC CCTGCCCATG GAAGGCCCGG AGCCTATGCG CAACGCCACC AAGTACGGCA ACATGACCCA GGACCACGTG ATGCACCTGC TCCTGAAGTC TGACCCCCTG GGAGTGTACC CGAAGCTGAA GGGGAGCCTC CCAGAAAACC TGAAGCACCT CAAGAACACC ATGGACGGTG TGAACTGGAA GCTCTTTGAG AACTGGCTGC GTCAGTGGCT CTTGTTTGAA ATGAGCAAGA ACTCGCTGGA GGAGACACCC TTTGAGGTTC CGCCAAAAGA CCCACTGGAG ACGGAGGACC TGTCGTCCGG GCTGGGCGTG ACCAAGCAGG ATCTCGGCCA AGTCATCCTG TAAGAGCAGC AGACGCCAGC CCCCAGCCCT GCGTGGCCAC AGCTTGCCTG CCCCCCACCC TCCTGCCGCC CCCACCTGCA CCTCATCCCA TGGGCCTCTG GCACCTGGCT CGCCGTCCTC CCTGGACACC TCACGTCTCT TCAGAAGGCC AAGGATGAAC GACACAGGGA GGCCCTGCTG CCCACAGCCA CATCGCTAGG CACAGTCAAG GTCCCGGCAG CCCCCGGCCA CGGCTTCTGT GAGAATAAAA GGTAGTGAGT TAGAAAAAAA AAAAAAAAA

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
CD74 HLA class II histocompatibility antigen gamma chain isoform b [Homo sapiens]. 308 5e-84 O

CD74 HLA class II histocompatibility antigen gamma chain isoform a [Homo sapiens]. 278 7e-75 O

CD74 HLA class II histocompatibility antigen gamma chain isoform c [Homo sapiens]. 187 1e-47 O

Locus	Definition	Score	E value	FL
CD74	HLA class II histocompatibility antigen gamma chain isoform b [Homo sapiens].	308	5e-84	O
CD74	HLA class II histocompatibility antigen gamma chain isoform a [Homo sapiens].	278	7e-75	O
CD74	HLA class II histocompatibility antigen gamma chain isoform c [Homo sapiens].	187	1e-47	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Cd74 H-2 class II histocompatibility antigen gamma chain isoform 2 [Mus musculus]. 296 3e-80 O

Cd74 H-2 class II histocompatibility antigen gamma chain isoform 1 [Mus musculus]. 260 2e-69 O

		Locus	Definition	Score	E value	FL
		Cd74	H-2 class II histocompatibility antigen gamma chain isoform 2 [Mus musculus].	296	3e-80	O
		Cd74	H-2 class II histocompatibility antigen gamma chain isoform 1 [Mus musculus].	260	2e-69	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC479329 PREDICTED: similar to HLA class II histocompatibility antigen, gamma chain (HLA-DR antigens associated invariant chain) (Ia antigen-associated invariant chain) (Ii) (p33) (CD74 antigen) [Canis familiaris]. 289 4e-78 O

		Locus	Definition	Score	E value	FL
		LOC479329	PREDICTED: similar to HLA class II histocompatibility antigen, gamma chain (HLA-DR antigens associated invariant chain) (Ia antigen-associated invariant chain) (Ii) (p33) (CD74 antigen) [Canis familiaris].	289	4e-78	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
CD74 CD74 antigen [Bos taurus]. 333 2e-91 O

		Locus	Definition	Score	E value	FL
		CD74	CD74 antigen [Bos taurus].	333	2e-91	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
CD74 CD74 antigen [Sus scrofa]. 394 e-110 O

		Locus	Definition	Score	E value	FL
		CD74	CD74 antigen [Sus scrofa].	394	e-110	O

Assembly Members: 5 TOP

Library Plate Loc. Read Name Accession Full Seq.

ITT01 0006 H05 ITT01_0006_H05.b BW976577
LNG01 0059 E12 LNG01_0059_E12.b BP437902
LNG01 0068 B02 LNG01_0068_B02.b BP434098
LVRM1 0015 G06 LVRM1_0015_G06.b BP453313
TES01 0035 D07 TES01_0035_D07.b CJ032307

SNP: 1 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
310 C 2 0 0.400 W S CCC/P
G 2 1 0.600 CCG/P

Alignment: TOP

20110601C-001649 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
TES01_0035_D07.b :                                                             
LNG01_0068_B02.b : nnnnnggctggacttgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0006_H05.b :                             nnaaagagxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0015_G06.b :                                                             
LNG01_0059_E12.b :                                                             


20110601C-001649 : ................GGCTGCTCCCTAAGGCAGCTTTGACTGCGTGGGGGTATTTCCAG
                   ---------+---------+---------+---------+---------+---------+ 44
TES01_0035_D07.b :   cgctgtggctatggGGCTGCTCCCTAAGGCAGCTTTGACTGCGTGGGGGTATTTCCAG
LNG01_0068_B02.b : xxxxxxxxxxxxxxxxatttggcctactAGGCAGCTTTGACTGCGTGGGGGTATTTCCAG
ITT01_0006_H05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGCAGCTTTGACTGCGTGGGGGTATTTCCAG
LVRM1_0015_G06.b :                    agttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LNG01_0059_E12.b :                                                             


20110601C-001649 : CTTTGTGGCTTTCACTTCCACTTCTCCCAGGTGGGCGGAGTGGCCTCCTGTGGACGAATC
                   ---------+---------+---------+---------+---------+---------+ 104
TES01_0035_D07.b : CTTTGTGGCTTTCACTTCCACTTCTCCCAGGTGGGCGGAGTGGCCTCCTGTGGACGAATC
LNG01_0068_B02.b : CTTTGTGGCTTTCACTTCCACTTCTCCCAGGTGGGCGGAGTGGCCTCCTGTGGACGAATC
ITT01_0006_H05.b : CTTTGTGGCTTTCACTTCCACTTCTCCCAGGTGGGCGGAGTGGCCTCCTGTGGACGAATC
LVRM1_0015_G06.b : xxxxxxxxxxxxxxxxxxxxCTTCTCCCAGGTGGGCGGAGTGGCCTCCTGTGGACGAATC
LNG01_0059_E12.b :                                      ntttcgggctggacttgacxxxx


20110601C-001649 : AGATTGCTCCTCCGCCCCAACTTCAGGAGGCGAGCCCGGGGCTTGGGGTCCCAGACGTGC
                   ---------+---------+---------+---------+---------+---------+ 164
TES01_0035_D07.b : AGATTGCTCCTCCGCCCCAACTTCAGGAGGCGAGCCCGGGGCTTGGGGTCCCAGACGTGC
LNG01_0068_B02.b : AGATTGCTCCTCCGCCCCAACTTCAGGAGGCGAGCCCGGGGCTTGGGGTCCCAGACGTGC
ITT01_0006_H05.b : AGATTGCTCCTCCGCCCCAACTTCAGGAGGCGAGCCCGGGGCTTGGGGTCCCAGACGTGC
LVRM1_0015_G06.b : AGATTGCTCCTCCGCCCCAACTTCAGGAGGCGAGCCCGGGGCTTGGGGTCCCAGACGTGC
LNG01_0059_E12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGACGTGC


20110601C-001649 : CGCCGCCGCCGCCACAGCAGCATCCGCAGCAGCAGCAGCAGCAGGACGACTAGGAAAGAC
                   ---------+---------+---------+---------+---------+---------+ 224
TES01_0035_D07.b : CGCCGCCGCCGCCAcagcagcatccgcagcagcagcagcagcagGACGACTAGGAAAGAC
LNG01_0068_B02.b : CGCCGCCGCCGCCAcagcagcatccgcagcagcagcagcagcagGACGACTAGGAAAGAC
ITT01_0006_H05.b : CGCCGCCGCCGCCAcagcagcatccgcagcagcagcagcagcagGACGACTAGGAAAGAC
LVRM1_0015_G06.b : CGCCGCCGCCGCCAcagcagcatccgcagcagcagcagcagcagGACGACTAGGAAAGAC
LNG01_0059_E12.b : CGCCGCCGCCGCCAcagcagcatccgcagcagcagcagcagcagGACGACTAGGAAAGAC


20110601C-001649 : CCCAGGCCAGAACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCA
                   ---------+---------+---------+---------+---------+---------+ 284
TES01_0035_D07.b : CCCAGGCCAGAACCATGGAGGATCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCA
LNG01_0068_B02.b : CCCAGGCCAGAACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCA
ITT01_0006_H05.b : CCCAGGCCAGAACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCA
LVRM1_0015_G06.b : CCCAGGCCAGAACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCA
LNG01_0059_E12.b : CCCAGGCCAGAACCATGGAGGACCAGCGCGACCTCATCTCCAACCATGAGCAGCTGCCCA


20110601C-001649 : TGCTGGGCCAGCGCCCCGGGGCCCCGGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAG
                   ---------+---------+---------+---------+---------+---------+ 344
TES01_0035_D07.b : TGCTGGGCCAGCGCCCCGGGGCCCCGGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAG
LNG01_0068_B02.b : TGCTGGGCCAGCGCCCCGGGGCCCCCGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAG
ITT01_0006_H05.b : TGCTGGGCCAGCGCCCCGGGGCCCCGGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAG
LVRM1_0015_G06.b : TGCTGGGCCAGCGCCCCGGGGCCCCGGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAG
LNG01_0059_E12.b : TGCTGGGCCAGCGCCCCGGGGCCCCCGAGAGCAAGTGCAGCCGTGGAGCTCTGTACACAG


20110601C-001649 : GCTTTTCTGTCCTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGT
                   ---------+---------+---------+---------+---------+---------+ 404
TES01_0035_D07.b : GCTTTTCTGTCCTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGT
LNG01_0068_B02.b : GCTTTTCTGTCCTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGT
ITT01_0006_H05.b : GCTTTTCTGTCCTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGT
LVRM1_0015_G06.b : GCTTTTCTGTCCTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGT
LNG01_0059_E12.b : GCTTTTCTGTCCTGGTGGCTCTGCTCCTGGCTGGCCAGGCCACCACCGCCTACTTCCTGT


20110601C-001649 : ACCAGCAGCAGGGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGA
                   ---------+---------+---------+---------+---------+---------+ 464
TES01_0035_D07.b : ACCAGCAGCAGGGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGA
LNG01_0068_B02.b : ACCAGCCGCAGGGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGA
ITT01_0006_H05.b : ACCAGCAGCAGGGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGA
LVRM1_0015_G06.b : ACCAGCAGCAGGGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGA
LNG01_0059_E12.b : ACCAGCAGCAGGGCCGGCTGGACAAGCTGACGGTCACCTCTCAGAACTTGCAGCTGGAGA


20110601C-001649 : GCCTGCGGATGAAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCC
                   ---------+---------+---------+---------+---------+---------+ 524
TES01_0035_D07.b : GCCTGCGGATGAAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCC
LNG01_0068_B02.b : GCCTGCGGATGAAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCC
ITT01_0006_H05.b : GCCTGCGGATGAAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCC
LVRM1_0015_G06.b : GCCTGCGGATGAAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCC
LNG01_0059_E12.b : GCCTGCGGATGAAGCTTCCCAAGCCCTCCAAGCCTTTGAGCAAGATGCGGGTTTCCGCCC


20110601C-001649 : CCATGCTGATGCAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGT
                   ---------+---------+---------+---------+---------+---------+ 584
TES01_0035_D07.b : CCATGCTGATGCAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGT
LNG01_0068_B02.b : CCATGCTGATGCAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGT
ITT01_0006_H05.b : CCATGCTGATGCAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGT
LVRM1_0015_G06.b : CCATGCTGATGCAGGCCCTGCCCATGGGAGGCCCGGAGCCTATGCGCAACGCCACTAAGT
LNG01_0059_E12.b : CCATGCTGATGCAGGCCCTGCCCATGGAAGGCCCGGAGCCTATGCGCAACGCCACCAAGT


20110601C-001649 : ACGGCAACATGACCCAGGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAG
                   ---------+---------+---------+---------+---------+---------+ 644
TES01_0035_D07.b : ACGGCAACATGACCCAGGAACACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAG
LNG01_0068_B02.b : ACGGCAACATGACCCAGGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAG
ITT01_0006_H05.b : ACGGCAACATGACCCAGGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAG
LVRM1_0015_G06.b : ACGGCAACATGACCCAGGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAG
LNG01_0059_E12.b : ACGGCAACATGACCCAGGACCACGTGATGCACCTGCTCCTGAAGTCTGACCCCCTGGGAG


20110601C-001649 : TGTACCCGAAGCTGAAGGGGAGCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGG
                   ---------+---------+---------+---------+---------+---------+ 704
TES01_0035_D07.b : TGTACCCGAAGCTGAAGGGGAGCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCGTGG
LNG01_0068_B02.b : TGTACCCGAAGCTGAAGGGGAGCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGG
ITT01_0006_H05.b : TGTACCCGAAGCTGAAGGGGAGCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGG
LVRM1_0015_G06.b : TGTACCCGAAGCTGAAGGGGAGCCTCCCAGAGAACCTGAAGCACCTCAAGAACACCATGG
LNG01_0059_E12.b : TGTACCCGAAGCCGAAGGGGAGCCTCCCAGAAAACCTGAAGCACCTCAAGAACACCATGG


20110601C-001649 : ACGGTGTGAACTGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGA
                   ---------+---------+---------+---------+---------+---------+ 764
TES01_0035_D07.b : ACGGTGTGAACTGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCCTGTTTGAAATGA
LNG01_0068_B02.b : ACGGTGTGAACTGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGA*ATGA
ITT01_0006_H05.b : ACGGTGTGAACTGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGA
LVRM1_0015_G06.b : ACGGTGTGAACTGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGA
LNG01_0059_E12.b : ACGGTGTGAACTGGAAGCTCTTTGAGAACTGGCTGCGTCAGTGGCTCTTGTTTGAAATGA


20110601C-001649 : GCAAGAACTCGCTGGAGGAGACACCCTTTGAGGTTCCGCCAAAAGACCCACTGGAGACGG
                   ---------+---------+---------+---------+---------+---------+ 824
TES01_0035_D07.b : GCAAGAACTCGCTGGAGGAGACACCCTTGGAGGTTCCGCCAAAAGACCCACTGGAAACGG
LNG01_0068_B02.b : GCAAGAACTCGCTGGAGGAGACACCCTTTGAAGTTCCGCCAAAAGACCCACTGGAGACGG
ITT01_0006_H05.b : GCAAGAACTCGCTGGAGGAGACACCCTTTGAGGTTCCGCCAAA*GACCCACTGGAGACGG
LVRM1_0015_G06.b : GCAAGA*CTTGCTGGAGGAGACACCCTTTGGAGTTCGCCAAAtcaccactggagacggag
LNG01_0059_E12.b : GCAAGAACTCGCTGGAGGAGACACCCTTTGAGGTTCCGCCAAAAGACCCACTGGAGACGG


20110601C-001649 : AGGACCTGTCGTCCGGGCTGGGCGTGACCAAGCAGGATCTCGGCCAAGTCATCCTGTAAG
                   ---------+---------+---------+---------+---------+---------+ 884
TES01_0035_D07.b : AAGAACTGTCGTCCGGGCTGGGCGTGACCAAACAAGATCTCGGCCAAATCATCCTGTAAA
LNG01_0068_B02.b : GAGACCTGTCGTCGGGGCTGGGCGTGACCAAGCAGGATCTCGGCCAAGTCATCCTGTAAG
ITT01_0006_H05.b : AGGACCTGTCGTCCGGGCTGGGCGTGACCNAGCAGGATCTCGGNCAAGTCATCCTGTAAG
LVRM1_0015_G06.b : gactgtcgtccg                                               
LNG01_0059_E12.b : AGGACCTGTCGTCCGGGCTGGGCGTGACCAAGCAGGATCTCGGCCAAGTCATCCTGTAAG


20110601C-001649 : AGCAGCAGACGCCAGCCCCCAGCCCTGCGTGGCCACAGCTTGCCTGCCCCCCACCCTCC*
                   ---------+---------+---------+---------+---------+---------+ 943
TES01_0035_D07.b : AACAACAAAAGCCAGGCCCCCAGCCTGCGTGGCCAAGGTTTGCCTGCCCCCCACCCTCC*
LNG01_0068_B02.b : AGCAGCAGACGCAA*GCCCCAGCCCTGCGTGGGCACAGCTTGCCTGGCCCCCACCCTCC*
ITT01_0006_H05.b : AGCAGCAGACGCCAGCCCCCAGCCCTGCGTGGCCACAGCTTGGCTGGCCCCCACCTCCC*
LVRM1_0015_G06.b :                                                             
LNG01_0059_E12.b : AGCAGCAGACGCCAGCCCCCAGCCCTGCGTGGCCACAGCTTGCCTGCCCCCCACCCTCCC


20110601C-001649 : TGCCGCCCCCACCTGCACCTCATCCCATGGGCCTCTGGCACCTGGCTCGCCGTCCTCCCT
                   ---------+---------+---------+---------+---------+---------+ 1003
TES01_0035_D07.b : TGTGCGCCCCACCTGGACTTCATCCCATGGGGCCCCGGGACCTGGCTCGCCctctcctcg
LNG01_0068_B02.b : TG*GCGCCCCCACTGCACTcatcccatgggctctggcactggctcgccttctccctggac
ITT01_0006_H05.b : TGGCGCCCCCACNTGGNACTCATCCCATGGGCCTCTGGCACCTGGCTCGCCGTCCTCCCT
LVRM1_0015_G06.b :                                                             
LNG01_0059_E12.b : TGCCGCCCCCACCTGCACCTCATCCCATGGGCCTCTGGCACCTGGCTCGCCGTCCTCCCT


20110601C-001649 : GGACACCTCACGTCTCTTCAGAAGGCCAAGGATGAACGACACAGGGAGGCCCTGCTGCCC
                   ---------+---------+---------+---------+---------+---------+ 1063
TES01_0035_D07.b : gaacacccccgttccttcaaaagccaaggataaacaaaacgggaggcctggtggccaaaa
LNG01_0068_B02.b : cctcagtctctccaaggcccagatgacgaacaagggaggcctgctgccaaatccatcgct
ITT01_0006_H05.b : GGACACTTCACGTCTCTTCAGAAGGCCA*GGATGAACGACACAGGGAGGGCCTGCTGCCC
LVRM1_0015_G06.b :                                                             
LNG01_0059_E12.b : GGACACCTCACGTCTCTTCAGAAGGCCAAGGATGAACGACACAGGGAGGCCCTGCTGCCC


20110601C-001649 : ACAGCCACATCGCTAGGCACAGTCAAGGTCCCGGCAGCCCCCGGCCACGGCTTCTGTGAG
                   ---------+---------+---------+---------+---------+---------+ 1123
TES01_0035_D07.b : tttcttccctaaaaggaaacagggccccgggaaaaacccgggaccggggttgtgcccctc
LNG01_0068_B02.b : aaaagaacaaggccccgggaacccctaaacggggtgtgccctccgaaacttgagccaagg
ITT01_0006_H05.b : A*AGCTTCATCGCTAGCAGGGACCAAGGCCCCGGGgacgcccgtgaccgggctggggcac
LVRM1_0015_G06.b :                                                             
LNG01_0059_E12.b : ACAGCCACATCCCTGTGCACAGTCAAGCTCGGCTCAGCCCCCGGCCACGGCTTCTGTGAG


20110601C-001649 : AATAAAAGGTAGTGAGTTAGAAAAAAAAAAAAAAAA........................
                   ---------+---------+---------+---------+---------+---------+ 1159
TES01_0035_D07.b : cgaaaccttgagccccaaatgtgggctgtccctggaaaagaggggccaattcttttgaat
LNG01_0068_B02.b : ggcgttctggatgaagaggnnnttccnnnnggtttcccttcccccccccccagagtgttt
ITT01_0006_H05.b : tctgaacctggactcaatgcgggntttataaagaaaaggggcgcggannnnnnna    
LVRM1_0015_G06.b :                                                             
LNG01_0059_E12.b : AATAAAAGGTAGTGAGTTAGAAAAAAAAAAAAAAAAgccacatgtgccccaactgcaggt


20110601C-001649 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1159
TES01_0035_D07.b : ctttcctcttattccacaccccaaaggaaagtctggtgtccctccccggtgggaccaatc
LNG01_0068_B02.b : ttctccccggggcccctctcctctttttgggaacgcactttngantnnntcccccncncc
ITT01_0006_H05.b :                                                             
LVRM1_0015_G06.b :                                                             
LNG01_0059_E12.b : cccgccccctctaagaattccctcggaggggcccagctttcgcggtaccgcttttttgtg


20110601C-001649 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1159
TES01_0035_D07.b : tttctccctttacttgggaaagagacaatctttttgttccttaaatataacacctgagac
LNG01_0068_B02.b : tgaaatctcccntggtttaggganncccccgggggccccaaaagttttat         
ITT01_0006_H05.b :                                                             
LVRM1_0015_G06.b :                                                             
LNG01_0059_E12.b : aaagggggcccctaaggggtgcgaataaagctaggggcgggccgccgtttttaaaacctc


20110601C-001649 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1159
TES01_0035_D07.b : attcacctgcttgctctcaatttttgaagtagggtg                       
LNG01_0068_B02.b :                                                             
ITT01_0006_H05.b :                                                             
LVRM1_0015_G06.b :                                                             
LNG01_0059_E12.b : ggaggggaaaaaccgcacctggggatcttgtgat