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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-003610

Length: 2,082

Sequence [FASTA format sequence]
TTGTCAGGTT GATTATCGAG CAAAACTTTG GGCGTGTAAT TTCTGTTTCC AGAGAAATCA
GTTTCCTCCA GCTTACGCAG GCATATCTGA GGTTAATCAG CCTGCTGAAC TGATGCCCCA
GTTTTCTACA ATTGAGTACG TGATACAGCG AGGTGCCCAG TCCCCTCTGA TCTTCCTCTA
TGTGGTGGAC ACGTGCCTGG AAGAAGATGA CCTGCAGGCC CTCAAGGAGT CCCTGCAGAT
GTCCCTGAGT CTCCTTCCCC CGGATGCTCT GGTGGGTTTG ATCACGTTTG GGAGGATGGT
GCAGGTTCAT GAACTCAGCT GCGAGGGAAT CTCCAAGAGT TACGTCTTCC GGGGGACCAA
GGATTTAACG GCAAAGCAAA TACAGGACAT GCTGGGCCTG ACCAAGCCTG CTATGCCCAT
GCAGCCAGCA CGACCCGCTC AGCCGCAGGA CCAACCTTTC ATTTCAAGCA GATTCCTGCA
GCCCGTTCAC AAGATCGACA TGAACCTCAC TGATCTTCTC GGGGAGCTGC AGAGGGACCC
ATGGCCCGTA ACCCAGGGGA AGAGACCTTT GCGATCCACT GGCGTTGCTT TGTCCATCGC
TGTTGGCTTG TTGGAGGGCA CTTTTCCAAA CACGGGAGCC AGGATTATGC TGTTTACCGG
GGGTCCTCCA ACCCAAGGAC CTGGCATGGT GGTTGGAGAT GAATTAAAGG TTCCTATTCG
TTCTTGGCAT GATATTGAGA AAGATAACGC GCGTTTCATG AAAAAGGCAA CCAAGCACTA
CGAGATGCTT GCTAACCGAA CAGCTGCAAA TGGTCACTGC ATTGATATTT ATGCTTGTGC
CCTTGATCAG ACTGGACTTT TGGAGATGAA GTGTTGCACA AATCTTACTG GAGGCCACAT
GGTAATGGGA GATTCTTTCA ACACTTCTCT CTTCAAGCAG ACATTCCAAA GAATTTTCAG
TAAAGATTTT AATGGCAATT TCCGAATGGC ATTTGGCGCC ACTTTGGAAG TAAAGACCTC
TCGGGAACTG AAGATCGCAG GAGCCATCGG ACCTTGTGTG TCTCTGAACA TGAGAGGACC
ATGTGTATCA GAAAATGAGC TTGGCGTTGG TGGCACGAGT CAGTGGAAGA TCTGTGGCCT
GGATCCCACA TCTACACTTG GCATCTACTT TGAAGTGGTC AATCAGCACA ACGCCCCAGT
CCCGCAGGGA GGGAGAGGCG CCATCCAGTT TGTCACACAC TATCAACACT CCAGCACCCA
GAGGCGCATC CGCGTGACCA CCATCGCCCG AAATTGGGCA GATGCGCAGA GCCAGCTCAA
GCACATAGAG GCTGCATTTG ACCAGGAGGC CGCGGCAGTC CTGATGGCAC GGCTGGGAGT
GTTCCGCACA GAGTCAGAGG AGGGCCCAGA TGTGCTCCGG TGGCTGGACC GACAGCTCAT
CCGACTGTGT CAGAAGTTTG GACAGTATAA CAAAGAAGAC CCCACTTCTT TTAGGTTATC
AGATTCCTTC TCCCTGTACC CTCAGTTCAT GTTCCATCTT AGAAGATCTC CGTTTCTTCA
AGTGTTTAAC AACAGTCCTG ATGAATCATC GTATTATCGA CACCACTTTG CCCGACAGGA
TCTAACCCAG TCCCTCATCA TGATCCAGCC CATTCTCTAC TCCTATTCAT TCCATGGGCC
TCCAGAGCCC GTGCTCCTGG ACAGCAGCAG CATTCTGGCT GATAGGATCC TCCTGATGGA
TACATTCTTC CAAATTGTCA TTTATCTCGG TGAGACAATA GCCCAGTGGC GGAAAGCTGG
GTACCAGGAC ATGCCCGAAT ATGAAAACTT CAAGCATCTT CTTCAGGCCC CGCTGGACGA
TGCTCAGGAA ATCTTGCAGG CGCGCTTCCC AATGCCGCGT TACATCAACA CGGAGCATGG
AGGCAGTCAG GCTCGATTCC TTTTGTCTAA AGTGAATCCA TCTCAGACAC ACAATAACCT
GTATGCTTGG GGACAGGAGA CGGGAGCACC CATCCTTACA GATGATGTTA GCCTGCANGT
GTTCATGGAC CATCTGAAGA AACTGGCTGT CTCCAGTGCC TG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSEC23Bprotein transport protein Sec23B isoform 1 [Homo sapiens]. 13430.0
Contig/Assembly ProteinSEC23Bprotein transport protein Sec23B isoform 1 [Homo sapiens]. 13430.0
Contig/Assembly ProteinSEC23Bprotein transport protein Sec23B isoform 1 [Homo sapiens]. 13430.0
Contig/Assembly ProteinSEC23Bprotein transport protein Sec23B isoform 1 [Homo sapiens]. 13430.0
Contig/Assembly ProteinSEC23Bprotein transport protein Sec23B isoform 2 [Homo sapiens]. 12960.0
Contig/Assembly ProteinSEC23Aprotein transport protein Sec23A [Homo sapiens]. 11990.0
Contig/Assembly ProteinSEC24Cprotein transport protein Sec24C [Homo sapiens]. 53.57e-07
Contig/Assembly ProteinSEC24Cprotein transport protein Sec24C [Homo sapiens]. 53.57e-07


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSec23bprotein transport protein Sec23B [Mus musculus]. 13400.0
Contig/Assembly ProteinSec23aprotein transport protein Sec23A [Mus musculus]. 12020.0
Contig/Assembly ProteinSec24cSec24 related gene family, member C isoform 2 [Mus musculus]. 52.41e-06
Contig/Assembly ProteinSec24cSec24 related gene family, member C isoform 1 [Mus musculus]. 52.41e-06


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC477142PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 10 [Canis familiaris]. 13460.0
Contig/Assembly ProteinLOC477142PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 1 [Canis familiaris]. 13460.0
Contig/Assembly ProteinLOC477142PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 8 [Canis familiaris]. 13310.0
Contig/Assembly ProteinLOC477142PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 5 [Canis familiaris]. 13290.0
Contig/Assembly ProteinLOC477142PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 6 [Canis familiaris]. 13270.0
Contig/Assembly ProteinLOC477142PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 9 [Canis familiaris]. 12770.0
Contig/Assembly ProteinLOC477142PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 7 [Canis familiaris]. 12770.0
Contig/Assembly ProteinLOC477142PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 4 [Canis familiaris]. 11860.0O
Contig/Assembly ProteinLOC480295PREDICTED: similar to Protein transport protein Sec23A (SEC23-related protein A) isoform 2 [Canis familiaris]. 11850.0
Contig/Assembly ProteinLOC480295PREDICTED: similar to Protein transport protein Sec23A (SEC23-related protein A) isoform 5 [Canis familiaris]. 11790.0


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSEC23Bprotein transport protein Sec23B [Bos taurus]. 13370.0
Contig/Assembly ProteinSEC23Aprotein transport protein Sec23A [Bos taurus]. 11940.0


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100524115PREDICTED: protein transport protein Sec23B-like isoform 2 [Sus scrofa]. 13650.0
Contig/Assembly ProteinLOC100524115PREDICTED: protein transport protein Sec23B-like isoform 1 [Sus scrofa]. 13650.0
Contig/Assembly ProteinSEC23APREDICTED: protein transport protein Sec23A isoform 2 [Sus scrofa]. 12030.0
Contig/Assembly ProteinSEC23BPREDICTED: protein transport protein Sec23B, partial [Sus scrofa]. 8030.0O


Assembly Members: 7      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
ADR010007G12ADR01_0007_G12.bDB782177 
ADR010033G06ADR01_0033_G06.bDB784453 
ADR010096H02ADR01_0096_H02.bDB790072 
DCI010004D10DCI01_0004_D10.bDB790849 
LVR010098A12LVR01_0098_A12.bBP441854 
SMG010079H07SMG01_0079_H07.bFS720142 
THY010035H02THY01_0035_H02.bBP168231 

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
1396A200.500WSTCA/S
G200.500TCG/S


Alignment:      TOP

20110601C-003610 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
THY01_0035_H02.b : ggggaactxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : ...................TTGTCAGGTTGATTATCGAGCAAAACTTTGGGCGTGTAATT
---------+---------+---------+---------+---------+---------+ 41
THY01_0035_H02.b : xxxxxxxxxxxxxxxxxxxTTGTCAGGTTGATTATCGAGCAAAACTTTGGGCGTGTAATT
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : TCTGTTTCCAGAGAAATCAGTTTCCTCCAGCTTACGCAGGCATATCTGAGGTTAATCAGC
---------+---------+---------+---------+---------+---------+ 101
THY01_0035_H02.b : TCTGTTTCCAGAGAAATCAGTTTCCTCCAGCTTACGCAGGCATATCTGAGGTTAATCAGC
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : CTGCTGAACTGATGCCCCAGTTTTCTACAATTGAGTACGTGATACAGCGAGGTGCCCAGT
---------+---------+---------+---------+---------+---------+ 161
THY01_0035_H02.b : CTGCTGAACTGATGCCCCAGTTTTCTACAATTGAGTACGTGATACAGCGAGGTGCCCAGT
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : CCCCTCTGATCTTCCTCTATGTGGTGGACACGTGCCTGGAAGAAGATGACCTGCAGGCCC
---------+---------+---------+---------+---------+---------+ 221
THY01_0035_H02.b : CCCCTCTGATCTTCCTCTATGTGGTGGACACGTGCCTGGAAGAAGATGACCTGCAGGCCC
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : TCAAGGAGTCCCTGCAGATGTCCCTGAGTCTCCTTCCCCCGGATGCTCTGGTGGGTTTGA
---------+---------+---------+---------+---------+---------+ 281
THY01_0035_H02.b : TCAAGGAGTCCCTGCAGATGTCCCTGAGTCTCCTTCCCCCGGATGCTCTGGTGGGTTTGA
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : TCACGTTTGGGAGGATGGTGCAGGTTCATGAACTCAGCTGCGAGGGAATCTCCAAGAGTT
---------+---------+---------+---------+---------+---------+ 341
THY01_0035_H02.b : TCACGTTTGGGAGGATGGTGCAGGTTCATGAACTCAGCTGCGAGGGAATCTCCAAGAGTT
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : ACGTCTTCCGGGGGACCAAGGATTTAACGGCAAAGCAAATACAGGACATGCTGGGCCTGA
---------+---------+---------+---------+---------+---------+ 401
THY01_0035_H02.b : ACGTCTTCCGGGGGACCAAGGATTTAACGGCAAAGCAAATACAGGACATGCTGGGCCTGA
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : CCAAGCCTGCTATGCCCATGCAGCCAGCACGACCCGCTCAGCCGCAGGACCAACCTTTCA
---------+---------+---------+---------+---------+---------+ 461
THY01_0035_H02.b : CCAAGCCTGCTATGCCCATGCAGCCAGCACGACCCGCTCAGCCGCAGGACCAACCTTTCA
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : TTTCAAGCAGATTCCTGCAGCCCGTTCACAAGATCGACATGAACCTCACTGATCTTCTCG
---------+---------+---------+---------+---------+---------+ 521
THY01_0035_H02.b : TTTCAAGCAGATTCCTGCAGCCCGTTCACAAGATCGACATGAACCTCACTGATCTTCTCG
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : GGGAGCTGCAGAGGGACCCATGGCCCGTAACCCAGGGGAAGAGACCTTTGCGATCCACTG
---------+---------+---------+---------+---------+---------+ 581
THY01_0035_H02.b : GGGAGCTGCAGAGGGACCCATGGCCCGTAACCCAGGGGAAGAGACCTTTGCGATCCACTG
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : GCGTTGCTTTGTCCATCGCTGTTGGCTTGTTGGAGGGCACTTTTCCAAACACGGGAGCCA
---------+---------+---------+---------+---------+---------+ 641
THY01_0035_H02.b : GCGTTGCTTTGTCCATCGCTGTTGGCTTGTTGGAGGGCACTTTTCCAAACACGGGAGCCA
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : GGATTATGCTGTTTACCGGGGGTCCTCCAACCCAAGGACCTGGCATGGTGGTTGGAGATG
---------+---------+---------+---------+---------+---------+ 701
THY01_0035_H02.b : GGATTATGCTGTTTACCGGGGGTCCTCCAACCCAAGGACCTGGCATGGTGGTTGGAGATG
LVR01_0098_A12.b : ggggcxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : AATTAAAGGTTCCTATTCGTTCTTGGCATGATATTGAGAAAGATAACGCGCGTTTCATGA
---------+---------+---------+---------+---------+---------+ 761
THY01_0035_H02.b : AATTAAAGGTTCCTATTCGTTCTTGGCATGATATTGAGAAAGATAACGCGCGTTTCATGA
LVR01_0098_A12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : AAAAGGCAACCAAGCACTACGAGATGCTTGCTAACCGAACAGCTGCAAATGGTCACTGCA
---------+---------+---------+---------+---------+---------+ 821
THY01_0035_H02.b : AAAAGGCAACCAAGCACTACGAGATGCTTGCTAACCGAACAGCTGCAAATGGTCACTGCA
LVR01_0098_A12.b : xxxxGGCAACCAAGCACTACCAGATGCTTGCTAACCGAACAGCTGCAAATGGTCACTGCA
ADR01_0007_G12.b : nnntttatgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : TTGATATTTATGCTTGTGCCCTTGATCAGACTGGACTTTTGGAGATGAAGTGTTGCACAA
---------+---------+---------+---------+---------+---------+ 881
THY01_0035_H02.b : TTGATATTTATGCTTGTGCCCTTGATCAGACTGGACTTTTGGAGATGAAGTGTTGCACAA
LVR01_0098_A12.b : TTGATATTTATGCTTGTGCCCTTGATCAGACTGGACTTTTGGAGATGAAGTGTTGCACAG
ADR01_0007_G12.b : xxxxxxgTTATGCTTGTGCCCTTGATCAGACTGGACTTTTGGAGATGAAGTGTTGCACAA
SMG01_0079_H07.b :
DCI01_0004_D10.b : atctctcatgcgtatcttxxxx
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : ATCTTACTGGAGGCCACATGGTAATGGGAGATTCTTTCAACACTTCTCTCTTCAAGCAGA
---------+---------+---------+---------+---------+---------+ 941
THY01_0035_H02.b : ATCTTACTGGAGGCCACATGGTAATGGGAGATTCTTTCAACACTTCTCTCTTCAAGCAGA
LVR01_0098_A12.b : ATCTTACTGGAGGCCACATGGTAATGGGAGATTCTTTCAACACTTCTCTCTTCAAGCAGA
ADR01_0007_G12.b : ATCTTACTGGAGGCCACATGGTAATGGGAGATTCTTTCAACACTTCTCTCTTCAAGCAGA
SMG01_0079_H07.b : cgcttccnnnnttgataaagcagcggtaxxxxxxxxx
DCI01_0004_D10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : CATT*CCAAAGAATTTTCAGTAAAGATTTTAATGGCAATTTCCGAATGGCATTTGGCGCC
---------+---------+---------+---------+---------+---------+ 1000
THY01_0035_H02.b : CATTTCCAAAGAATTTTCAGTAAAaaattttaaatggcaaatttccgaaatggcattttg
LVR01_0098_A12.b : CATT*CCAAAGAATTTTCAGTAAAGATTTTAATGGCAATTTCCGAATGGCATTTGGCGCC
ADR01_0007_G12.b : CATT*CCAAAGAATTTTCAGTAAAGATTTTAATGGCAATTTCCGAATGGCATTTGGCGCC
SMG01_0079_H07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxTTTTAATGGCAATTTCCGAATGGCATTTGGCGCC
DCI01_0004_D10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0033_G06.b :
ADR01_0096_H02.b :
20110601C-003610 : ACTTTGGAAGTAAAGACCTCTCGGGAACTGAAGATCGCAGGAGCCATCGGACCTTGTGTG
---------+---------+---------+---------+---------+---------+ 1060
THY01_0035_H02.b : gggcccacttttggaagtaaaaaaacctctccgggaaaactgaaaaaatccgcaggaaac
LVR01_0098_A12.b : ACTTTGGAAGTAAAGACCTCTCGGGAACTGAAGATCACAGGAGCCATCGGACCTTGTGTG
ADR01_0007_G12.b : ACTTTGGAAGTAAAGACCTCTCGGGAACTGAAGATCGCAGGAGCCATCGGACCTTGTGTG
SMG01_0079_H07.b : ACTTTGGAAGTAAAGACCTCTCGGGAACTGAAGATCGCAGGAGCCATCGGACCTTGTGTG
DCI01_0004_D10.b : xxxxxxxxxxxxxxxxxxxxxxxxxAACTGAAGATCGCAGGAGCCATCGGACCTTGTGTG
ADR01_0033_G06.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
ADR01_0096_H02.b :
20110601C-003610 : TCTCTGAACATGAGAGGACCATGTGTATCAGAAAATGAGCTTGGCGTTGGTGGCACGAGT
---------+---------+---------+---------+---------+---------+ 1120
THY01_0035_H02.b : ccattcggaaaccttgggggggggtttctttaaaaaattaaaaaaggaaaccctttgtgg
LVR01_0098_A12.b : TCTCTGAACATGAGAGGACCATGTGTATCACAAAATGAGCTTGGCGTTGGTGGCACGAGT
ADR01_0007_G12.b : TCTCTGAACATGAGAGGACCATGTGTATCAGAAAATGAGCTTGGCGTTGGTGGCACGAGT
SMG01_0079_H07.b : TCTCTGAACATGAGAGGACCATGTGTATCAGAAAATGAGCTTGGCGTTGGTGGCACGAGT
DCI01_0004_D10.b : TCTCTGAACATGAGAGGACCATGTGTATCAGAAAATGAGCTTGGCGTTGGTGGCACGAGT
ADR01_0033_G06.b : nnnnnnnnnnnxxxxxxxxxxxxxxctggAGAAAATGAGCTTGGCGTTGGTGGCACGAGT
ADR01_0096_H02.b :
20110601C-003610 : CAGTGGAAGATCTGTGGCCTGGATCCCACATCTACACTTGGCATCTACTTTGAAGTGGTC
---------+---------+---------+---------+---------+---------+ 1180
THY01_0035_H02.b : gttatttcaaaaaaaaaaatggaagacccttgttggggcggtttttggggggggggggca
LVR01_0098_A12.b : CAGTGGAAGATCTGTGGCCTGGATCCCACATCTACACTTGGCATCTACTTTGAAGTGGTC
ADR01_0007_G12.b : CAGTGGAAGATCTGTGGCCTGGATCCCACATCTACACTTGGCATCTACTTTGAAGTGGTC
SMG01_0079_H07.b : CAGTGGAAGATCTGTGGCCTGGATCCCACATCTACACTTGGCATCTACTTTGAAGTGGTC
DCI01_0004_D10.b : CAGTGGAAGATCTGTGGCCTGGATCCCACATCTACACTTGGCATCTACTTTGAAGTGGTC
ADR01_0033_G06.b : CAGTGGAAGATCTGTGGCCTGGATCCCACATCTACACTTGGCATCTACTTTGAAGTGGTC
ADR01_0096_H02.b :
20110601C-003610 : AATCAGCACAACGCCCCAGTCCCGCAGGGAGGGAGAGGCGCCATCCAGTTTGTCACACAC
---------+---------+---------+---------+---------+---------+ 1240
THY01_0035_H02.b : caccacaaaaaaaatctc
LVR01_0098_A12.b : AATCAGCACAACGCCCCAGTCCCGCAGGGAGGGAGAGGCGCCATCCAGTTTGTCACACAC
ADR01_0007_G12.b : AATCAGCACAACGCCCCAGTCCCGCAGGGAGGGAGAGGCGCCATCCAGTTTGTCACACAC
SMG01_0079_H07.b : AATCAGCACAACGCCCCAGTCCCGCAGGGAGGGAGAGGCGCCATCCAGTTTGTCACACAC
DCI01_0004_D10.b : AATCAGCACAACGCCCCAGTCCCGCAGGGAGGGAGAGGCGCCATCCAGTTTGTCACACAC
ADR01_0033_G06.b : AATCAGCACAACGCCCCAGTCCCGCAGGGAGGGAGAGGCGCCATCCAGTTTGTCACACAC
ADR01_0096_H02.b : nnnggttgatcaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-003610 : TATCAACACTCCAGCACCCAGAGGCGCATCCGCGTGACCACCATCGCCCGAAATTGGGCA
---------+---------+---------+---------+---------+---------+ 1300
THY01_0035_H02.b :
LVR01_0098_A12.b : TATCAACACTCCAGCACCCAGAGGCGCATCCGCGTGACCACCATCGCCCGAAATTGGGCA
ADR01_0007_G12.b : TATCAACACTCCAGCACCCAGAGGCGCATCCGCGTGACCACCATCGCCCGAAATTGGGCA
SMG01_0079_H07.b : TATCAACACTCCAGCACCCAGAGGCGCATCCGCGTGACCACCATCGCCCGAAATTGGGCA
DCI01_0004_D10.b : TATCAACACTCCAGCACCCAGAGGCGCATCCGCGTGACCACCATCGCCCGAAATTGGGCA
ADR01_0033_G06.b : TATCAACACTCCAGCACCCAGAGGCGCATCCGCGTGACCACCATCGCCCGAAATTGGGCA
ADR01_0096_H02.b : xttggggACTCCAGCACCCAGAGGCGCATCCGCGTGACCACCATCGCCCGAAATTGGGCA
20110601C-003610 : GATGCGCAGAGCCAGCTCAAGCACATAGAGGCTGCATTTGACCAGGAGGCCGCGGCAGTC
---------+---------+---------+---------+---------+---------+ 1360
THY01_0035_H02.b :
LVR01_0098_A12.b : GATGCGCAGAGCCAGCTCAAGCACATAGAGGCTGCATTTGACCACGATGCCGCGGCAGTC
ADR01_0007_G12.b : GATGCGCAGAGCCAGCTCAAGCACATAGAGGCTGCATTTGACCAGGAGGCCGCGGCAGTC
SMG01_0079_H07.b : GATGCGCAGAGCCAGCTCAAGCACATAGAGGCTGCATTTGACCAGGAGGCCGCGGCAGTC
DCI01_0004_D10.b : GATGCGCAGAGCCAGCTCAAGCACATAGAGGCTGCATTTGACCAGGAGGCCGCGGCAGTC
ADR01_0033_G06.b : GATGCGCAGAGCCAGCTCAAGCACATAGAGGCTGCATTTGACCAGGAGGCCGCGGCAGTC
ADR01_0096_H02.b : GATGCGCAGAGCCAGCTCAAGCACATAGAGGCTGCATTTGACCAGGAGGCCGCGGCAGTC
20110601C-003610 : CTGATGGCACGGCTGGGAGTGTTCCGCACAGAGTCAGAGGAGGGCCCAGATGTGCTCCGG
---------+---------+---------+---------+---------+---------+ 1420
THY01_0035_H02.b :
LVR01_0098_A12.b : CTGATGGCACGGCTGGGAGTGTTCCGCACAGAGTCGGAGGAGGGCCCAGATGTGCTCCGG
ADR01_0007_G12.b : CTGATGGCACGGCTGGGAGTGTTCCGCACAGAGTCGGAGGAGGGCCCAGATGTGCTCCGG
SMG01_0079_H07.b : CTGATGGCACGGCTGGGAGTGTTCCGCACAGAGTCGGAGGAGGGCCCAGATGTGCTCCGG
DCI01_0004_D10.b : CTGATGGCACGGCTGGGAGTGTTCCGCACAGAGTCGGAGGAGGGCCCAGATGTGCTCCGG
ADR01_0033_G06.b : CTGATGGCACGGCTGGGAGTGTTCCGCACAGAGTCAGAGGAGGGCCCAGATGTGCTCCGG
ADR01_0096_H02.b : CTGATGGCACGGCTGGGAGTGTTCCGCACAGAGTCAGAGGAGGGCCCAGATGTGCTCCGG
20110601C-003610 : TGGCTGGACCGACAGCTCATCCGACTGTGTCAGAAGTTTGGACAGTATAACAAAGAAGAC
---------+---------+---------+---------+---------+---------+ 1480
THY01_0035_H02.b :
LVR01_0098_A12.b : TGGCTGGACCGACAGCTCATCCGACTGTGTCAGAAGTTTGGACAGTATAACAAATAAGAC
ADR01_0007_G12.b : TGGCTGGACCGACAGCTCATCCGACTGTGTCAGAAGTTTGGACAGTATAACAAAGAAGAC
SMG01_0079_H07.b : TGGCTGGACCGACAGCTCATCCGACTGTGTCAGAAGTTTGGACAGTATAACAAAGAAGAC
DCI01_0004_D10.b : TGGCTGGACCGACAGCTCATCCGACTGTGTCAGAAGTTTGGACAGTATAACAAAGAAGAC
ADR01_0033_G06.b : TGGCTGGACCGACAGCTCATCCGACTGTGTCAGAAGTTTGGACAGTATAACAAAGAAGAC
ADR01_0096_H02.b : TGGCTGGACCGACAGCTCATCCGACTGTGTCAGAAGTTTGGACAGTATAACAAAGAAGAC
20110601C-003610 : CCCACTTCTTTTAGGTTATCAGATTCCTTCTCCCTGTACCCTCAGTTCATGTTCCATCTT
---------+---------+---------+---------+---------+---------+ 1540
THY01_0035_H02.b :
LVR01_0098_A12.b : CCCACTTCTTTTAGGTTATCAGATTCCTTCTCCCTGTACCCTCAGTTCATGTTCCATCTT
ADR01_0007_G12.b : CCCACTTCTTTTAGGTTATCAGATTCCTTCTCCCTGTACCCTCAGTTCATGTTCCATCTT
SMG01_0079_H07.b : CCCACTTCTTTTAGGTTATCAGATTCCTTCTCCCTGTACCCTCAGTTCATGTTCCATCTT
DCI01_0004_D10.b : CCCACTTCTTTTAGGTTATCAGATTCCTTCTCCCTGTACCCTCAGTTCATGTTCCATCTT
ADR01_0033_G06.b : CCCACTTCTTTTAGGTTATCAGATTCCTTCTCCCTGTACCCTCAGTTCATGTTCCATCTT
ADR01_0096_H02.b : CCCACTTCTTTTAGGTTATCAGATTCCTTCTCCCTGTACCCTCAGTTCATGTTCCATCTT
20110601C-003610 : AGAAGATCTCCGTTTCTTCAAGTGTTTAACAACAGTCCTGATGAATCATCGTATTATCGA
---------+---------+---------+---------+---------+---------+ 1600
THY01_0035_H02.b :
LVR01_0098_A12.b : AGAAGATCTCCGTTTTCTCAAGTGTTTAACAACAGTCCTGATGAATCATCGTATTATCGA
ADR01_0007_G12.b : AGAAGATCTCCGTTTCTTCAAGTGTTTTACAACAGTCCTGATGAATCATCGTATTATCGA
SMG01_0079_H07.b : AGAAGATCTCCGTTTCTTCAAGTGTTTAACAACAGTCCTGATGAATCATCGTATTATCGA
DCI01_0004_D10.b : AGAAGATCTCCGTTTCTTCAAGTGTTTAACAACAGTCCTGATGAATCATCGTATTATCGA
ADR01_0033_G06.b : AGAAGATCTCCGTTTCTTCAAGTGTTTAACAACAGTCCTGATGAATCATCGTATTATCGA
ADR01_0096_H02.b : AGAAGATCTCCGTTTCTTCAAGTGTTTAACAACAGTCCTGATGAATCATCGTATTATCGA
20110601C-003610 : CACCACTTTGCCCGACAGGATCTAACCCAGTCCCTCATCATGATCCAGCCCATTCTCTAC
---------+---------+---------+---------+---------+---------+ 1660
THY01_0035_H02.b :
LVR01_0098_A12.b : CACCATTTTGCCCGACAGGATCTAACCCAGTCCCTCATCATGATCCACCCCATTCTCTAC
ADR01_0007_G12.b : CACCACTTTGCCCGACAGGATCTAACCCCAGTCCTCATCATGATCCAGCCCATTCTCTAC
SMG01_0079_H07.b : CACCACTTTGCCCGACAGGATCTAACCCAGTCCCTCATCATGATCCAGCCCATTCTCTAC
DCI01_0004_D10.b : CACCACTTTGCCCGACAGGATCTAACCCAGTCCCTCATCATGATCCAGCCCATTCTCTAC
ADR01_0033_G06.b : CACCACTTTGCCCGACAGGATCTAACCCAGTCCCTCATCATGATCCAGCCCATTCTCTAC
ADR01_0096_H02.b : CACCACTTTGCCCGACAGGATCTAACCCAGTCCCTCATCATGATCCAGCCCATTCTCTAC
20110601C-003610 : TCCTATTCATTCCATGGGCCTCCAGAGCCC*GTGCTCCTGGACAGCAGCAGCATTCTGGC
---------+---------+---------+---------+---------+---------+ 1719
THY01_0035_H02.b :
LVR01_0098_A12.b : TCCTATTCATTCCATGGGCCTCCcgaagcccgtgctccctggacagcagccaacattctg
ADR01_0007_G12.b : TCCTATTCATTCCATGGGGCCTCCGAACCCCGTGCTCCTGAACAGCAGCAGCATTCTGGC
SMG01_0079_H07.b : TCCTATTCATTCCATGGGCCTCCGGAGCCC*GTGCTCCTGGACAGCAGCAGCATTCTGGC
DCI01_0004_D10.b : TCCTATTCATTCCATGGGCCTCCGGAGCCC*GTGCTCCTGGACAGCAGCAGCATTCTGGC
ADR01_0033_G06.b : TCCTATTCATTCCATGGGCCTCCAGAGCCC*GTGCTCCTGGACAGCAGCAGCATTCTGGC
ADR01_0096_H02.b : TCCTATTCATTCCATGGGCCTCCAGAGCCC*GTGCTCCTGGACAGCAGCAGCATTCTGGC
20110601C-003610 : TGATAGGATCCTCCTGATGGATACATTCTTCCAAATTGTCATTTATCTCGGTGAGACAAT
---------+---------+---------+---------+---------+---------+ 1779
THY01_0035_H02.b :
LVR01_0098_A12.b : ggcgaataagattcctcctgatggatacctttctttcaaaattgtcatttaatccgggtt
ADR01_0007_G12.b : TGATANGATCCTCCTGATGGAAACGTTCTTCCAAATTGTCATTTATCTCGGTGAGACAta
SMG01_0079_H07.b : TGATAGGATCCTCCTGATGGATACGTTCTTCCNAATTGTCATTTATCTCGGTGAGACAta
DCI01_0004_D10.b : TGATAGGATCCTCCTGATGGATACGTTCTTCCAAATTGTCATTTATCTCGGTGAGACAAT
ADR01_0033_G06.b : TGATAGGATCCTCCTGATGGATACATTCTTCCAAATTGTCATTTATCTCGGTGAGACAAT
ADR01_0096_H02.b : TGATAGGATCCTCCTGATGGATACATTCTTCCAAATTGTCATTTATCTCGGTGAGACAAT
20110601C-003610 : AGCCCAGTGGCGGAAAGCTGGGTACCAGGACATGCCCGAATATGAAAACTTCAAGCATCT
---------+---------+---------+---------+---------+---------+ 1839
THY01_0035_H02.b :
LVR01_0098_A12.b : aaaccaataccccccaggggcggaaaaacctggggtaaccaagaaaattgc
ADR01_0007_G12.b : accccaatggcgaaaactgggtaccaggacatggcccaatatgaaaactttcagcaactt
SMG01_0079_H07.b : gcccagtggcggaagctgggtacaagacatggccgaatatgaaaactcaagcatctcttc
DCI01_0004_D10.b : AGCCCAGTGGCGGGAAGCTGGGTACCAGGACATGCCCGAATATG*AAACTTCGAGCATCT
ADR01_0033_G06.b : AGCCCAGTGGCGGAAAGCTGGGTACCAGGACATGCCCGAATATGAAAACTTCAAGCATCT
ADR01_0096_H02.b : AGCCCAGTGGCGGAAAGCTGGGTACCAGGACATGCCCGAATATGAAAACTTCAAGCATCT
20110601C-003610 : TCTTCAGGCCCCGCTGGACGATGCTCAGGAAATCTTGCAGGCGCGCTTCCCAATGCCGCG
---------+---------+---------+---------+---------+---------+ 1899
THY01_0035_H02.b :
LVR01_0098_A12.b :
ADR01_0007_G12.b : ccttcggccccgctgaacaatgctcagaattcctgcagcccccctcccagtgcggcgtta
SMG01_0079_H07.b : aggccccgctggagatgctcaggaaatctgcaggccggcttccaatgccggtttcttcac
DCI01_0004_D10.b : TCTTCAGGGCCCGCTGGACGATGCTCAAGAAATCTTGCAGGCcgcgctcccaatgccgcg
ADR01_0033_G06.b : TCTTCAGGCCCCGCTGGACGATGCTCANGAAATCTTGCAGGCGCGCTTCCNAATGCCNNG
ADR01_0096_H02.b : TCTTCAGGCCCCGCTGGACGATGCTCAGGAAATCTTGCAGGCGCGCTTCCCAATGCCGCG
20110601C-003610 : *TTACATCAACACGGAGCATGGAGGCAGTCAGGCTCGATTCCTTTTGTCTAAAGTGAATC
---------+---------+---------+---------+---------+---------+ 1958
THY01_0035_H02.b :
LVR01_0098_A12.b :
ADR01_0007_G12.b : atcaacacggacatggaggcatcaggcccattcttttgtcaaagtgaatcatctcccaaa
SMG01_0079_H07.b : ccggagcatgaaggcagccagctccatccttttgccaaagggatccctccagaccccatt
DCI01_0004_D10.b : ttacatcaacccggagcatggaggcagccggctccattcttttgtctaaagtgaatccat
ADR01_0033_G06.b : CGTACATCA*CACGGAGCATGGAGGCAGTCAGGCTCGATTCCTTTTGTCTAAAGTGAATC
ADR01_0096_H02.b : *TTACATCAACACGGAGCATGGAGGCAGTCAGGCTCGATTCCTTTTGTCTAAAGTGAATC
20110601C-003610 : CATCTCAGACACACAATAACCTGTATGCTTGGGGACAGGAGACGGGAGCACCCATCCTTA
---------+---------+---------+---------+---------+---------+ 2018
THY01_0035_H02.b :
LVR01_0098_A12.b :
ADR01_0007_G12.b : acaaaacctgttatctggggaaagaaacgggaaccccatcctaccaaaacttaacccgcg
SMG01_0079_H07.b : aaccgtatgctggggcacggaacggaccccctccttcaaaaatttcccggagggtctgga
DCI01_0004_D10.b : ctcaaaccccataaccttgttggctggggacaagatgtgaattatctctgtcaatatatc
ADR01_0033_G06.b : CATCTCAGACACACAATAACCTGTATGCTTGGGGACAGGAGACGGGAGCACC*ATCCTTA
ADR01_0096_H02.b : CATCTCAGACACACAATAACCTGTATGCTTGGGGACAGGAGACGGGAGCACCCATCCTTA
20110601C-003610 : CAGATGATGTTAGCCTGCANGTGTTCATGGACCATCTGAAGAAACTGGCTGTCTCCAGTG
---------+---------+---------+---------+---------+---------+ 2078
THY01_0035_H02.b :
LVR01_0098_A12.b :
ADR01_0007_G12.b : gggttcggaaccttgaaaaaaggggttcccctgccgttaccggggaataggggaagggaa
SMG01_0079_H07.b : catctaaaaacgggtgtcccggccgttaagggggttgggggaagggaaaaaacctgctat
DCI01_0004_D10.b : atgccgtgtccacacctgcctgcggggtgttgataaaccgcaaaatgggaaagggagctt
ADR01_0033_G06.b : CAGATGATGTagcctgcaggtgtcatggacatctgaagaactggctgtctccntgcctgt
ADR01_0096_H02.b : CAGATGATGTTAGCCTGCANGTGTTCATGGACCATCTGAAGAAACTGGCTGTCTCCAGTG
20110601C-003610 : CCTG........................................................
---------+---------+---------+---------+---------+---------+ 2082
THY01_0035_H02.b :
LVR01_0098_A12.b :
ADR01_0007_G12.b : aaaacttctttttgttccc
SMG01_0079_H07.b : tggccaccgtttaagggtaaaccctttttcttggggaatttaaaaaccacgcggttgggc
DCI01_0004_D10.b : tctccttaagaagaccttggccgtgggggtcactgaacaactaaagaaacgggctccccc
ADR01_0033_G06.b : taactgangatatgaggaggaagggaaaaaaaccctgtcatattgggccccagcggttat
ADR01_0096_H02.b : CCTGgttnaactgagatatgagggagaaggggagaaaacactgtcatattgtgtccacag
20110601C-003610 : ............................................................
---------+---------+---------+---------+---------+---------+ 2082
THY01_0035_H02.b :
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b : ccttggtaatattgttcctttgggcccgttcccggaaaaagagaaagttggccaaaattt
DCI01_0004_D10.b : ggccgtgttacggggaaaaggggggaagggagaaacacgtgttattgtgccacacgtgta
ADR01_0033_G06.b : aaagcctaaaattctttttactttctggggaaattaaaaaaatccaagcgggtttaaaac
ADR01_0096_H02.b : ctgtttataaaggcttacattccttttacttttcgggtgaaattaataaataatcaagca
20110601C-003610 : ............................................................
---------+---------+---------+---------+---------+---------+ 2082
THY01_0035_H02.b :
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b : ttttttcccccttaggggaaaaaaaggttgggcgccccccaaagggggagagacggaaac
DCI01_0004_D10.b : agagctatcttcctttctgtttggggaatataaaacacaagaagttggcctcttgtttat
ADR01_0033_G06.b : cccttggggaaaaatattggttccttacggggcccgggtttacaggaaaaaaaaggccaa
ADR01_0096_H02.b : gttatatgtacctcttaggttataattatttgaattcctttaccgggccctggtctacac
20110601C-003610 : ............................................................
---------+---------+---------+---------+---------+---------+ 2082
THY01_0035_H02.b :
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b : agtttttctttttttaaaaaaggcccgggggccgcccccc
DCI01_0004_D10.b : atttttcctcccgcc
ADR01_0033_G06.b : agttgggccggaaagatttaagttttgtcccacctttaaaccgaaaacaaccagatttgg
ADR01_0096_H02.b : tgtaaaatataaggccataatgttttggnactggagatgttaaatgtttttgaaaccaac
20110601C-003610 : ............................................................
---------+---------+---------+---------+---------+---------+ 2082
THY01_0035_H02.b :
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b : cctcgtccccaaaaaggccaaggaacaccggaaacaggtaaatgttctttttttaaaaaa
ADR01_0096_H02.b : tttaaaactggttaaatcaaacctatgtatttggccacttctttccgaaaattaagggtc
20110601C-003610 : ............................................................
---------+---------+---------+---------+---------+---------+ 2082
THY01_0035_H02.b :
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b : aaaattggtggggggccttacggggactacctttgtgtatt
ADR01_0096_H02.b : gaaaggaaataaccggaaaaaaaacccaggtaaaaaaggcgaaaccatttgttctgaaaa
20110601C-003610 : ............................................................
---------+---------+---------+---------+---------+---------+ 2082
THY01_0035_H02.b :
LVR01_0098_A12.b :
ADR01_0007_G12.b :
SMG01_0079_H07.b :
DCI01_0004_D10.b :
ADR01_0033_G06.b :
ADR01_0096_H02.b : aaaaaaaaggcccttgtccaacttgagggggccccttaaatactcaggg