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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004723

Length: 792

Sequence:  [FASTA format sequence]
GTCTCCGGAC TGCGGGCGCA CGGGGCAGCC CTGCTGGCGG CCCCGGGACC CCCTGGAGCT
TCCAGCCCGG AAACCGGGAT CGGAGCGCCT CGGGCCCGCG TCCCTCCAGG GAGTCGTTGC
CCGGTCTACT CACTGTGTGT TTGCTTCTGC CGACTTGCGC ATCCAAAGCA GGTCCCGCCT
TTAAACCAAA TATTCTGCTG ATCATGGCGG ATGATCTGGG CATTGGGGAT CTCGGTTGCT
ATGGGAACGA CACACTGAGG ACGCCGAATA TCGACCGGCT TGCGGAGGAA GGCGTGAGGC
TCACCCAGCA CCTGGCGGCC GCCCCCGTCT GCACCCCCAG CCGGGCCGCC TTCCTCACGG
GCAGACACGC GCTCAGATCA GGCATGGATG CCACCCACGG GTACCGCGTC CTGCGGTGGA
ATGGGGGCTC AGGCGGACTC CCCCAGAATG AGACCACCTT TGCCAGGATC CTGCAGCGGC
AAGGCTACGC CACGGGCCTC ATCGGAAAAT GGCACCAGGG CGTCAACTGT GAATCCCGCA
CTGACCACTG CCACCACCCC CTGAACCACG GGTTCGACTA CTTCTATGGC ATGCCGTTCA
CGCTGGTCAG CGAATGTCAC CCAGGCTGGC CCCCGCAAGT GGCCGTGGCC CTGGGGGGGC
GGCTTTGGCT CTCCACGCAG ATGATGGCGC TGGGGGTGCT CACGGTGGCG GCCGGCAAGA
CCCTCGGGCT CATCTCCGTT CCCTGGAAAT TCGTCTGGGG TGCGGCCAGC CTGGTCCTGC
TGTTCTTCGG CT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		ARSD	arylsulfatase D precursor [Homo sapiens].	337	7e-93	O
		ARSE	arylsulfatase E precursor [Homo sapiens].	275	3e-74	O
		ARSF	arylsulfatase F precursor [Homo sapiens].	261	5e-70	O
		ARSF	arylsulfatase F precursor [Homo sapiens].	261	5e-70	O
		ARSF	arylsulfatase F precursor [Homo sapiens].	261	5e-70	O
		ARSH	arylsulfatase H [Homo sapiens].	255	3e-68	O
		STS	steryl-sulfatase precursor [Homo sapiens].	231	7e-61	O
		ARSG	arylsulfatase G precursor [Homo sapiens].	129	3e-30	O
		ARSA	arylsulfatase A isoform a precursor [Homo sapiens].	124	1e-28	O
		ARSA	arylsulfatase A isoform a precursor [Homo sapiens].	124	1e-28	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Sts	steryl-sulfatase precursor [Mus musculus].	223	2e-58	O
		Arsg	arylsulfatase G isoform 1 precursor [Mus musculus].	131	7e-31	O
		Arsa	arylsulfatase A precursor [Mus musculus].	127	1e-29	O
		Galns	N-acetylgalactosamine-6-sulfatase isoform 1 precursor [Mus musculus].	116	2e-26	O
		Galns	N-acetylgalactosamine-6-sulfatase isoform 2 precursor [Mus musculus].	116	2e-26	O
		Arsi	arylsulfatase I precursor [Mus musculus].	90.1	2e-18	O
		Arsj	arylsulfatase J precursor [Mus musculus].	89.4	3e-18
		Arsb	arylsulfatase B precursor [Mus musculus].	86.7	2e-17	O
		Ids	iduronate 2-sulfatase isoform a [Mus musculus].	74.3	1e-13	O
		Sgsh	N-sulfoglucosamine sulfohydrolase [Mus musculus].	57	2e-08	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC491718	PREDICTED: similar to arylsulfatase D isoform a precursor [Canis familiaris].	363	e-100
		ARSE	arylsulfatase E [Canis lupus familiaris].	269	2e-72	O
		ARSH	arylsulfatase H [Canis lupus familiaris].	262	3e-70	O
		LOC609908	PREDICTED: similar to arylsulfatase F precursor [Canis familiaris].	253	1e-67
		LOC491727	PREDICTED: similar to Steryl-sulfatase precursor (Steroid sulfatase) (Steryl-sulfate sulfohydrolase) (Arylsulfatase C) (ASC) [Canis familiaris].	233	2e-61	O
		ARSG	arylsulfatase G precursor [Canis lupus familiaris].	133	2e-31	O
		ARSA	arylsulfatase A [Canis lupus familiaris].	127	2e-29	O
		GALNS	N-acetylgalactosamine-6-sulfatase precursor [Canis lupus familiaris].	120	2e-27	O
		ARSI	arylsulfatase I [Canis lupus familiaris].	90.9	1e-18	O
		ARSJ	arylsulfatase J [Canis lupus familiaris].	88.6	6e-18

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		ARSD	PREDICTED: arylsulfatase D-like [Bos taurus].	351	5e-97	O
		ARSD	PREDICTED: arylsulfatase D-like, partial [Bos taurus].	351	5e-97	O
		ARSE	arylsulfatase E [Bos taurus].	259	1e-69	O
		LOC523693	PREDICTED: arylsulfatase H-like, partial [Bos taurus].	254	5e-68	O
		LOC100336572	PREDICTED: arylsulfatase H-like [Bos taurus].	254	5e-68
		STS	steryl-sulfatase [Bos taurus].	221	4e-58	O
		ARSG	arylsulfatase G [Bos taurus].	134	1e-31	O
		ARSA	arylsulfatase A precursor [Bos taurus].	126	2e-29	O
		GALNS	N-acetylgalactosamine-6-sulfatase [Bos taurus].	122	4e-28	O
		ARSI	PREDICTED: arylsulfatase I-like [Bos taurus].	91.3	9e-19	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		ARSD	PREDICTED: arylsulfatase D, partial [Sus scrofa].	335	1e-92	O
		STS	PREDICTED: steryl-sulfatase [Sus scrofa].	234	3e-62	O
		LOC100521576	PREDICTED: arylsulfatase G-like [Sus scrofa].	132	2e-31	O
		GALNS	N-acetylgalactosamine-6-sulfatase precursor [Sus scrofa].	122	3e-28	O
		AS-A	arylsulfatase A [Sus scrofa].	119	1e-27	O
		LOC100621771	PREDICTED: arylsulfatase F-like, partial [Sus scrofa].	119	2e-27	O
		LOC100517463	PREDICTED: arylsulfatase I-like [Sus scrofa].	93.6	1e-19	O
		ARSE	PREDICTED: arylsulfatase E, partial [Sus scrofa].	92.8	2e-19	O
		ARSJ	PREDICTED: arylsulfatase J [Sus scrofa].	88.6	4e-18

Alignment:      TOP

20110601C-004723 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRM1_0012_H07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0062_A08.b :                                    xxxxxxxxxxxxxxxxxxxxxxxxx
SMG01_0098_G12.b :         ncgctnnntnatagagtaagcagcxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0142_E09.b :            nnnnccgttagctgtcgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-004723 : ...GTCTCCGGACTGCGGGCGCACGGGGCAGCCCTGCTGGCGGCCCCGGGACCCCCTGGA
                   ---------+---------+---------+---------+---------+---------+ 57
OVRM1_0012_H07.b : xxxGTCTCCGGACTGCGGGCGCACGGGGCAGCCCTGCTGGCGGCCCCGGGACCCCCTGGA
LVRM1_0062_A08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxggtccggcgctccgggccgc
SMG01_0098_G12.b : xxxxxxxxxxxxgtccgggacacagggnctctcggggcaaggtccggcgctccgggccgc
CLNT1_0142_E09.b : xxxxxxxxxxxxxxxxxxxxcgatagggctctcggggcaaggtccggcgctccgggccgc


20110601C-004723 : GCTTCCAGCCCGGAAACCGGGATCGGAGCGCCTCGGGCCCGCGTCCCTCCAGGGAGTCGT
                   ---------+---------+---------+---------+---------+---------+ 117
OVRM1_0012_H07.b : GCTTCCAGCCCGGAAACCGGGATCGGAGCGCCTCGGGCCCGCGTCCCTCCAGGGACTCGT
LVRM1_0062_A08.b : gctcagccatgggacccaccgctccaaggagacgcgctgcgcccgccgcgAGGGACTCGT
SMG01_0098_G12.b : gctcagccatgggacccaccgctccaaggagacgcgctgcgcccgccgcgAGGGAGTCGT
CLNT1_0142_E09.b : gctcagccatgggacccaccgctccaaggagacgcgctgcgcccgccgcgAGGGAGTCGT


20110601C-004723 : TGCCCGGTCTACTCACTGTGTGTTTGCTTCTGCCGACTTGCGCATCCAAAGCAGGTCCCG
                   ---------+---------+---------+---------+---------+---------+ 177
OVRM1_0012_H07.b : TGCCCGGTCTACTCACTGTGTGTTTGCTTCTGCCGACTTGCGCATCCAAAGCAGGTCCCG
LVRM1_0062_A08.b : TGCCCGGTCTACTCACTGTGTGTTTGCTTCTGCCGACTTGCGCATCCAAAGCAGGTCCCG
SMG01_0098_G12.b : TGCCCGGTCTACTCACTGTGTGTTTGCTTCTGCCGACTTGCGCATCCAAAGCAGGTCCCG
CLNT1_0142_E09.b : TGCCCGGTCTACTCACTGTGTGTTTGCTTCTGCCGACTTGCGCATCCAAAGCAGGTCCCG


20110601C-004723 : CCTTTAAACCAAATATTCTGCTGATCATGGCGGATGATCTGGGCATTGGGGATCTCGGTT
                   ---------+---------+---------+---------+---------+---------+ 237
OVRM1_0012_H07.b : CCTTTAAACCAAATATTCTGCTGATCATGGCGGATGATCTGGGCATTGGGGATCTCGGTT
LVRM1_0062_A08.b : CCTTTAAACCAAATATTCTGCTGATCATGGCGGATGATCTGGGCATTGGGGATCTCGGTT
SMG01_0098_G12.b : CCTTTAAACCAAATATTCTGCTGATCATGGCGGATGATCTGGGCATTGGGGATCTCGGTT
CLNT1_0142_E09.b : CCTTTAAACCAAATATTCTGCTGATCATGGCGGATGATCTGGGCATTGGGGACCTCGGTT


20110601C-004723 : GCTATGGGAACGACACACTGAGGACGCCGAATATCGACCGGCTTGCGGAGGAAGGCGTGA
                   ---------+---------+---------+---------+---------+---------+ 297
OVRM1_0012_H07.b : GCTATGGGAACGACACACTGAGGACGCCGAATATCGACCGGCTTGCGGAGGAAGGCGTGA
LVRM1_0062_A08.b : GCTATGGGAACGACACACTGAGGACGCCGAATATCGACCGGCTTGCGGAGGAAGGCGTGA
SMG01_0098_G12.b : GCTATGGGAACGACACACTGAGGACGCCGAATATCGACCGGCTTGCGGAGGAAGGCGTGA
CLNT1_0142_E09.b : GCTATGGGAACGACACACTGAGGACGCCGAATATCGACCGGCTTGCGGAGGAAGGCGTGA


20110601C-004723 : GGCTCACCCAGCACCTGGCGGCCGCCCCCGTCTGCACCCCCAGCCGGGCCGCCTTCCTCA
                   ---------+---------+---------+---------+---------+---------+ 357
OVRM1_0012_H07.b : GGCTCACCCAGCACCTGGCGGCCGCCCCCGTCTGCACCCCCAGCCGGGCCGCCTTCCTCA
LVRM1_0062_A08.b : GGCTCACCCAGCACCTGGCGGCCGCCCCCGTCTGCACCCCCAGCCGGGCCGCCTTCCTCA
SMG01_0098_G12.b : GGCTCACCCAGCACCTGGCGGCCGCCCCCGTCTGCACCCCCAGCCGGGCCGCCTTCCTCA
CLNT1_0142_E09.b : GGCTCACCCAGCACCTGGCGGCCGCCCCCGTCTGCACCCCCAGCCGGGCCGCCTTCCTCA


20110601C-004723 : CGGGCAGACACGCGCTCAGATCAGGCATGGATGCCACCCACGGGTACCGCGTCCTGCGGT
                   ---------+---------+---------+---------+---------+---------+ 417
OVRM1_0012_H07.b : CGGGCAGACACGCGCTCAGATCAGGCATGGATGCCACCCATGGGTACCGCGTCCTGCGGT
LVRM1_0062_A08.b : CGGGCAGACACGCGCTCAGATCAGGCATGGATGCCACCCATGGGTACCGCGTCCTGCGGT
SMG01_0098_G12.b : CGGGCAGACACGCGCTCAGATCAGGCATGGATGCCACCCACGGGTACCGCGTCCTGCGGT
CLNT1_0142_E09.b : CGGGCAGACACGCGCTCAGATCAGGCATGGATGCCACCCACGGGTACCGCGTCCTGCGGT


20110601C-004723 : GGAATGGGGGCTCAGGCGGACTCCCCCAGAATGAGACCACCTTTGCCAGGATCCTGCAGC
                   ---------+---------+---------+---------+---------+---------+ 477
OVRM1_0012_H07.b : GGAATGGGGGCTCAGGCGGACTCCCCCAGAATGAGACCACCTTTGCCAGGATCCTGCAGC
LVRM1_0062_A08.b : GGAATGGGGGCTCATGCGGACTCCCCCAGAATGAGACCACCTTTGCCAGGATCCTGCAGC
SMG01_0098_G12.b : GGAATGGGGGCTCAGGCGGACTCCCCCAGAATGAGACCACCTTTGCCAGGATCCTGCAGC
CLNT1_0142_E09.b : GGAATGGGGGCTCAGGCGGACTCCCCCAGAATGAGACCACCTTTGCCAGGATCCTGCAGC


20110601C-004723 : GGCAAGGCTACGCCACGGGCCTCATCGGAAAATGGCACCAGGGCGTCAACTGTGAATCCC
                   ---------+---------+---------+---------+---------+---------+ 537
OVRM1_0012_H07.b : GGCAAGGCTACGCCACAGGCCTCATCGGAAAATGGCACCAGGGCGTCAACTGTGAATCCC
LVRM1_0062_A08.b : GGCAAGGCTACGCCACAGGCCTCATCGGAAAATGGCACCAGGGCGTCAACTGTGAATCCC
SMG01_0098_G12.b : GGCAAGGCTACGCCACGGGCCTCATCGGAAAATGGCACCAGGGCGTCAACTGTGAATCCC
CLNT1_0142_E09.b : GGCAAGGCTACGCCACGGGCCTCATCGGAAAATGGCACCAGGGCGTCAACTGTGAATCCC


20110601C-004723 : GCACTGACCACTGCCACCACCCCCTGAACCACGGGTTCGACTACTTCTATGGCATGCCGT
                   ---------+---------+---------+---------+---------+---------+ 597
OVRM1_0012_H07.b : GCACTGACCACTGCCACCACCCCCTGAACCACGGGTTCGACTACTTCTATGGCATGCCCT
LVRM1_0062_A08.b : GCACTGACCACTGCCACCACCCCCTGAACCACGGGTTCGACTACTTCTATGGCATGCCCT
SMG01_0098_G12.b : GCACTGACCACTGCCACCACCCCCTGAACCACGGGTTCGACTACTTCTATGGCATGCCGT
CLNT1_0142_E09.b : GCACTGACCACTGCCACCACCCCCTGAACCACGGGTTCGACTACTTCTATGGCATGCCGT


20110601C-004723 : TCACGCTGGTCAGCGAATGTCACCCAGGCTGGCCCCCGCAAGTGGCCGTGGCCCTGGGG*
                   ---------+---------+---------+---------+---------+---------+ 656
OVRM1_0012_H07.b : TCACGCTGGTCAGCGAATGTCACCCAGGCTGGCCCCCGCAAGTGGCCGTGGCCCTGGGGG
LVRM1_0062_A08.b : TCACGCTGGTCAGCGAATGTCACCCAAGCTGGCCCCCGCAAGTGGTCGTGGCCCTTGGGT
SMG01_0098_G12.b : TCACGCTGGTCAGCGAATGTCACCCAGGCTGGCCCCCGCAAGTGGCCGTGGCCCTGGGG*
CLNT1_0142_E09.b : TCACGCTGGTCAGCGAATGTCACCCAGGCTGGCCCCCGCAAGTGGCCGTGGCCCTGGGG*


20110601C-004723 : GGGCGGCTTTGGCTCTCCACGCAGATGATGGCGCTGGGGGTGCTCACGGTGGCGGCCGGC
                   ---------+---------+---------+---------+---------+---------+ 716
OVRM1_0012_H07.b : GGGCGGCTTTGGCTCTC*ACGCANATNATGGCGCTGGGGGTGCTCACGGTGGCGGCCGGC
LVRM1_0062_A08.b : GGGCGGGTTTGGCTtttcacgcaaattatggctctgtgggtgctcacgagagaggtcgta
SMG01_0098_G12.b : GGGCGGCTTTGGCTCTCCACGCAGATGATGGCGCTGGGGGTGCTCACGGTGGCGGCCGGC
CLNT1_0142_E09.b : GGGCGGCTTTGGCTCTCCACGCAGATGATGGCGCTGGGGGTGCTCACGGTGGCGGCCGGC


20110601C-004723 : AAGACCCTCGGGCTCATCTCCGTTCCCTGGAAATTCGTCTGGGGTGCGGCCAGCCTGGTC
                   ---------+---------+---------+---------+---------+---------+ 776
OVRM1_0012_H07.b : A*GACCCTCGGGCTCATCTCCGTTCCCTGGA*ATTCGTCTGGGGTGCGGCCAGCCTGGTC
LVRM1_0062_A08.b : aatactctatggctcatgtagattcactgtaaatttggtagtagttcgatcgccat   
SMG01_0098_G12.b : AAGACCCTCGGGCTCATCTCCGTTCCCTGGAAATTCGTCTGGGGTGCGGCCAGCCTGGTC
CLNT1_0142_E09.b : AAGACCCTCGGGCTCATCTCCGTTCCCTGGAAATTCGTCTGGGGTGCGGCCCGCCTGGTC


20110601C-004723 : CTGCTGTTCTTCGGCT............................................
                   ---------+---------+---------+---------+---------+---------+ 792
OVRM1_0012_H07.b : CTGCTGTTCTTCGgctctggttcg                                   
LVRM1_0062_A08.b :                                                             
SMG01_0098_G12.b : CTGCTGTTCTTCGgctcctggttcgccagcctggggttcgtccgccgctggaactgcttc
CLNT1_0142_E09.b : CTGCTGTTCTTCGGCTcctggttcccggcctggggttcgtccgccgctggaactgcttcc


20110601C-004723 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 792
OVRM1_0012_H07.b :                                                             
LVRM1_0062_A08.b :                                                             
SMG01_0098_G12.b : ctcatgaggaaccccaacgggttgggacagcccatggttttggaaagcacggcccggctt
CLNT1_0142_E09.b : tcatgaggaaccacgacgtggtggaacagcccatgggttttgaaaacccggcccggtttt


20110601C-004723 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 792
OVRM1_0012_H07.b :                                                             
LVRM1_0062_A08.b :                                                             
SMG01_0098_G12.b : ctgaacggggaaaccgctgtctttcatccaggaaataaacctgggccaattccggccttt
CLNT1_0142_E09.b : tgaacggggaagcgtttcccttttccaggaactaaacctggttcattccggctctttgtt


20110601C-004723 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 792
OVRM1_0012_H07.b :                                                             
LVRM1_0062_A08.b :                                                             
SMG01_0098_G12.b : tgtttcccggcccaggtccagtgcccttcatgacccccaaaagttccaggggaaaattcc
CLNT1_0142_E09.b : ccccgctcccattccaattgcccctttggaccaccaataatttccgggggaaaggtctgc


20110601C-004723 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 792
OVRM1_0012_H07.b :                                                             
LVRM1_0062_A08.b :                                                             
SMG01_0098_G12.b : cccggcctctttgggaaaacttggaaaaaatgaacgccttttggggaaatttttaaaccc
CLNT1_0142_E09.b : cggcctcttggccaaaaagtgaagaaaatggcggctcttttggggaatttttatccccca


20110601C-004723 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 792
OVRM1_0012_H07.b :                                                             
LVRM1_0062_A08.b :                                                             
SMG01_0098_G12.b : cccaaaaaaggggttgaaaaacaaacctcagtttttcccctttatgggggaaaactgagg
CLNT1_0142_E09.b : aataaatgttgtaaaacgaaattccgtattttccatcttacggggagatccgggagatat


20110601C-004723 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 792
OVRM1_0012_H07.b :                                                             
LVRM1_0062_A08.b :                                                             
SMG01_0098_G12.b : agaaaatggggcctcccgtgggcggaaggaaggaattaaaagggcaaagatgggcgtggg
CLNT1_0142_E09.b : atgcttctttctggggcggagtatgttataaagttgctatatcatcgcgagtaaggcctc


20110601C-004723 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 792
OVRM1_0012_H07.b :                                                             
LVRM1_0062_A08.b :                                                             
SMG01_0098_G12.b : aaaggggaccccctccgggattacggggcccgggtgccccccccccctttctaaaccccc
CLNT1_0142_E09.b : tctcacattgttttccgagtcttgggctcttgcttcattttaaactcctccctttgtaat


20110601C-004723 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 792
OVRM1_0012_H07.b :                                                             
LVRM1_0062_A08.b :                                                             
SMG01_0098_G12.b : cgggggaattttccccggccctgtggggggctccccaaaaagtatattccccccttccct
CLNT1_0142_E09.b : cttactggttatagagtgtgttagtcactaactgcacgcgaggtgcttcttcatgttata


20110601C-004723 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 792
OVRM1_0012_H07.b :                                                             
LVRM1_0062_A08.b :                                                             
SMG01_0098_G12.b : ttagaaaaacaacccccattttttttaggaagc                          
CLNT1_0142_E09.b : catgcacttatcttaattctgtacaattatatgatgaactcattattcactaccctttat


20110601C-004723 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 792
OVRM1_0012_H07.b :                                                             
LVRM1_0062_A08.b :                                                             
SMG01_0098_G12.b :                                                             
CLNT1_0142_E09.b : tctcaaattactttttttgatccca