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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-005317

Length: 934

Sequence:  [FASTA format sequence]
CATGCGCCAC AAAAGGTTCC GATCCGGAAA CTACCCATCC TCGTTAAGCA ACGAGACAGA
CCGCCTGGTA CACTGGTGCC ACGGGGCGCC CGGCGTCATC CACACGCTCA TGCAGGCGTA
CAAGGTGTTT AAGGAGGAGA AGTACCTGAG GGACGCCGTG GAGTGCAGCG ACGTGATTTG
GCAGCGGGGC CTGCTGCGCA AGGGCTACGG CATCTGCCAC GGGACTGCGG GCAACGGCTA
CTCCTTCCTC TCCCTTTACC GCCTCACGCA GGACAAGAAG TACCTCTACC GAGCTTGCAA
GTTTGCAGAG TGGTGTCTGG AGTACGGAGC ACATGGTTGC CGCATTCCCG ACAGGCCCTA
CTCTCTCTTC GAAGGCATGG CCGGCGCCAT TCACTTCCTC TCCGACATCC TGGCCCCCGA
GACAGCACGG TTTCCAGCAT TTGAACTCGG CTCTTCAGAG AGGGATCCAA AGGTGCAAAA
AGACTCCTAA GGGACCCGAC GGGACCACAG GCCGCCAGGT TGCCTGGCGC CTGACACAGA
AGCCACCGTG CATCCTGAGG AAGGGAGGAC GGAGGGAGCA GAGCCCCGCA GACCCCCGCC
CCGCCAGCCT GCTGTGACCG TGCTCCCCTC GCTGGTGTCA GCGTGACGTC TCCGTGTCCA
GTGCTGCGTA ATGTTTGCAT GTCCCTCGGT GTTTGCTCTC CGTAGGCGTA GGTTGTTCTC
AGCGGAAGCC CTTCTCTGTC CATGAGCCCG AGCTGGCCGT GCATGAGGGC ACACAGCAGC
CCCTTCTCCG TACCCAATAA AGCGGGGTGC TTCTGTATTG GAAAACAGGA CACAGGCAAG
TGGTGTCTCT CTTATGTACC AAAAAAACTC TCTTTTAAGA TGCCATCCCA GTGTGAAACT
TTTCCCACAT TTCCTTGTGG AACCCTTTTG GGGG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		LANCL2	lanC-like protein 2 [Homo sapiens].	315	3e-86
		LANCL1	lanC-like protein 1 [Homo sapiens].	244	8e-65
		LANCL1	lanC-like protein 1 [Homo sapiens].	244	8e-65
		LANCL1	lanC-like protein 1 [Homo sapiens].	244	8e-65
		LANCL3	lanC-like protein 3 isoform 2 [Homo sapiens].	142	3e-34
		LANCL3	lanC-like protein 3 isoform 1 [Homo sapiens].	108	5e-24

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Lancl2	lanC-like protein 2 [Mus musculus].	310	8e-85
		Lancl1	lanC-like protein 1 [Mus musculus].	238	5e-63
		Lancl1	lanC-like protein 1 [Mus musculus].	238	5e-63
		Lancl1	lanC-like protein 1 [Mus musculus].	238	5e-63
		Lancl3	lanC-like protein 3 [Mus musculus].	142	3e-34

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC483240	PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin sensitivity protein) [Canis familiaris].	318	4e-87
		LOC478897	PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte membrane protein) (p40) [Canis familiaris].	236	2e-62
		LOC491823	PREDICTED: similar to LanC lantibiotic synthetase component C-like 3 [Canis familiaris].	144	2e-34

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		LANCL2	lanC-like protein 2 [Bos taurus].	326	2e-89
		LANCL1	lanC-like protein 1 [Bos taurus].	245	5e-65
		LANCL3	lanC-like protein 3 [Bos taurus].	144	1e-34

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100620078	PREDICTED: lanC-like protein 2-like, partial [Sus scrofa].	327	8e-90
		LOC100153701	PREDICTED: lanC-like protein 1 [Sus scrofa].	238	3e-63
		LOC100626898	PREDICTED: lanC-like protein 3-like [Sus scrofa].	144	9e-35
		LOC100625232	PREDICTED: lanC-like protein 1-like [Sus scrofa].	104	6e-23	O

Alignment:      TOP

20110601C-005317 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SPL01_0057_B02.b : nnnnggcatgtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_H03.b :       gaggctcttggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-005317 : .....................CATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
                   ---------+---------+---------+---------+---------+---------+ 39
SPL01_0057_B02.b : xxxxxxxxxxxxxxxxxxxxxCATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
OVR01_0037_H03.b : xxxxxxxxxxxxxxxxxxxxxxctgttcaactggAGGTTCCGATCCGGAAACTACCCATC


20110601C-005317 : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
                   ---------+---------+---------+---------+---------+---------+ 99
SPL01_0057_B02.b : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
OVR01_0037_H03.b : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT


20110601C-005317 : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
                   ---------+---------+---------+---------+---------+---------+ 159
SPL01_0057_B02.b : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
OVR01_0037_H03.b : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT


20110601C-005317 : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
                   ---------+---------+---------+---------+---------+---------+ 219
SPL01_0057_B02.b : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
OVR01_0037_H03.b : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA


20110601C-005317 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
                   ---------+---------+---------+---------+---------+---------+ 279
SPL01_0057_B02.b : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
OVR01_0037_H03.b : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA


20110601C-005317 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
                   ---------+---------+---------+---------+---------+---------+ 339
SPL01_0057_B02.b : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
OVR01_0037_H03.b : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG


20110601C-005317 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
                   ---------+---------+---------+---------+---------+---------+ 399
SPL01_0057_B02.b : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
OVR01_0037_H03.b : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT


20110601C-005317 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
                   ---------+---------+---------+---------+---------+---------+ 459
SPL01_0057_B02.b : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
OVR01_0037_H03.b : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA


20110601C-005317 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
                   ---------+---------+---------+---------+---------+---------+ 519
SPL01_0057_B02.b : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
OVR01_0037_H03.b : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG


20110601C-005317 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
                   ---------+---------+---------+---------+---------+---------+ 579
SPL01_0057_B02.b : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
OVR01_0037_H03.b : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC


20110601C-005317 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTGACCGTGCTCCCCTCGCTGGTGTC
                   ---------+---------+---------+---------+---------+---------+ 639
SPL01_0057_B02.b : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
OVR01_0037_H03.b : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTGACCGTGCTCCCCTCGCTGGTGTC


20110601C-005317 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
                   ---------+---------+---------+---------+---------+---------+ 699
SPL01_0057_B02.b : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
OVR01_0037_H03.b : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT


20110601C-005317 : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC
                   ---------+---------+---------+---------+---------+---------+ 758
SPL01_0057_B02.b : CCGTANGCGTANGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAGCCCCGAGCTGGCC
OVR01_0037_H03.b : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC


20110601C-005317 : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
                   ---------+---------+---------+---------+---------+---------+ 818
SPL01_0057_B02.b : CTGCATGAAGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
OVR01_0037_H03.b : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT


20110601C-005317 : TGGAAAACAGGACACAGGCAAGTGGTGTCTCTCTTATGTACCAAAAAAACTCTCTTTTAA
                   ---------+---------+---------+---------+---------+---------+ 878
SPL01_0057_B02.b : TGGcagacggacaccagcagggggttgtctctccttagttaccagaaagactctcctttt
OVR01_0037_H03.b : TGGAAAACAGGACACAGGCAAGTGGTGTCTCTCTTATGTACCAAAAAAACTCTCTTTTAA


20110601C-005317 : GATGCCATCCCAGTGTGAAACTTTTCCCACATTTCCTTGTGGAACCCTTTTGGGGG....
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b : agaatgccatcccaggggggaaacttttccccagcattttctggtgggaacctttttggg
OVR01_0037_H03.b : GATGCCATCCCAGTGTGAAACTTTTCCCACATTTCCTTGTGGAACCCTTTTGGGGGgagc


20110601C-005317 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b : ggaaacttgaaaaaaaaaacttgctcccaaaaatgaaaaaaaaattaccgaaaggtaaaa
OVR01_0037_H03.b : tttgaaaaaaaaattgctcccaaaaatggaaaaaaaaaaccggaaggtaaaaggggtttt


20110601C-005317 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b : gggggctttctccctggaaaggggggccgggggaacact                    
OVR01_0037_H03.b : tccttggaaggggggtttggggaagcctttggccccccgtttggaaccaaccccctcttt


20110601C-005317 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b :                                                             
OVR01_0037_H03.b : gggggttttttttggttcctcccttttcggggggtttttaggagaaaccccaaagggggg


20110601C-005317 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b :                                                             
OVR01_0037_H03.b : ggccccgggtggggaaacttttctttcccccggggtttccccccccctttccccacaggg


20110601C-005317 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 934
SPL01_0057_B02.b :                                                             
OVR01_0037_H03.b : gctcttttttttttttaggggggtgtaaaaaaaaatttttt