[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-007116
Length:
864
Sequence:
[FASTA format sequence]
GCTGCAGTCC TCTACCCCTG CGTGGCTTAC GACTGTGGGC CCCAGTGTGC TTGGAATAAA
AATCCTCTTG CTGTTTGCAT CAAGACCGCT TCTCGTGAGT GATTTGGGGT GTCGCCTCTT
CCGAGTCCGG ACGAGGGGGA TTTTCCTTCT GCTGGCCTTT CATTTGGTGC GTTGGCCGGG
AAACCCCGCG ACCACCCCTC ACACCCGAGA ACCGACTTGG AGGTAAAGGG ATCCCCTTTG
GAATGTGTGT GTGCGTGCCG GCCGGCGTCT CTGTTCTGAG TGTTTGTTTT CTGGGATGCG
CGCTTTCGGT TTGCAGCTGT CCTCCCAGAC CGTAAGGACT GGGGGACTGT GATCAGTAGA
CGTGCTAGGA GGATCACAGG CTGCCGCCCT GGGGGACGCC CCGGGAGGTG GGGAGAGCCA
GGTGCCTGGT GGTCTCCTTC TGTCGGTCAG AGGACCGAGT TCTGTTGTTG AAGCGAAAGC
TTCCCCCTCC GCGGCCGTCT GACTCTTTTG CCTGCTTGTG GAAGGCGCGG ACGGGTCGCG
TGTGTCTGGA TCTGTTGGTT TCTGTTTCGT GTGTCTTTGT CTTATGCGTC CTTGTCCCCA
GTTTTAATAT GGGACAGACG GTGACGACCC CCCCCCCCCT TAGTTTGACT CTCAACCATT
TGGACTGAAG TTAAATCCAG GGCTCATAAT TTGTCAGTTC AGGTTAAGAA GGGACCTTTA
ATTCTGAGAT TATCCTGGCT GTTAAAGCAA TTATTTTTCA GACTGGACCC GGCTCTCATC
CTGATCAGGA GCCCTATATC CTTACATGGC AAGATTTGGC AGAAGATCCT CCGCCATGGA
TTAAACCATG GCTAAATAAA CCCA
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL |
---|
Locus | Definition | Score | E value | FL |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC610863 | PREDICTED: similar to USP6 N-terminal like [Canis familiaris]. | 55.5 | 6e-08 | O |
Locus | Definition | Score | E value | FL |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC100620387 | PREDICTED: MORN repeat-containing protein 5-like, partial [Sus scrofa]. | 123 | 1e-28 | |
![]() |
![]() | LOC100515331 | PREDICTED: hypothetical protein LOC100515331 [Sus scrofa]. | 79 | 3e-15 |
|
|
20110601C-007116 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
BFLT1_0098_B05.b : ggatccgtttgcgnacgxxxxxxxx
OVR01_0003_D12.b : agaactxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TES01_0074_F01.b :
UTR01_0087_E01.b :
OVR01_0071_H07.b :
20110601C-007116 : ..............................................GCTGCAGTCCTCTA
---------+---------+---------+---------+---------+---------+ 14
BFLT1_0098_B05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTGCAGTCCTCTA
OVR01_0003_D12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTGCAGTCCTCTA
TES01_0074_F01.b : ttctgcgttggctctggctgcgtcctct
UTR01_0087_E01.b : nnttggcttgtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0071_H07.b : nnnnggcttggactatnacxxxxxxxxxxxxxx
20110601C-007116 : CCCCTGCGTGGCTTACGACTGTGGGCCCCAGTGTGCTTGGAATAAAAATCCTCTTGCTGT
---------+---------+---------+---------+---------+---------+ 74
BFLT1_0098_B05.b : CCCCTGCGTGGCTTACGACTGTGGGCCCCAGTGTGCTTGGAATAAAAATCCTCTTGCTGT
OVR01_0003_D12.b : CCCCTGCGTGGCTTACGACTGTGGGCCCCAGTGTGCTTGGAATAAAAATCCTCTTGCTGT
TES01_0074_F01.b : CCCCTGCGTGGCTTACGACTGTGGGCCCC*GCGCGCTTGGAATAAAAATCCTCTTGCTGT
UTR01_0087_E01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGTGCTTGGAATAAAAATCCTCTTGCTGT
OVR01_0071_H07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCTCTTGCTGT
20110601C-007116 : TTGCATCAAGACCGCTTCTCGTGAGTGATTTGGGGTGTCGCCTCTTCCGAGTCCGGACGA
---------+---------+---------+---------+---------+---------+ 134
BFLT1_0098_B05.b : TTGCATCAAGACCGCTTCTCGTGAGTGATTTGGGGTGTCGCCTCTTCCGAGTCCGGACGA
OVR01_0003_D12.b : TTGCATCAAGACCGCTTCTCGTGAGTGATTTGGGGTGTCGCCTCTTCCGAGTCCGGACGA
TES01_0074_F01.b : TTGCATCAAGACCGCTTCTCGTGAGTGATTTGGGGTGTCGCCTCTTCCGAGTCCGGACGA
UTR01_0087_E01.b : TTGCATCAAGACCGCTTCTCCTGAGTGATTTGGGGTGTCGCCTCTTCCGAGTCCGGACGA
OVR01_0071_H07.b : TTGCATCAAGACCGCTTCTCCTGAGTGATTTGGGGTGTCGCCTCTTCCGAGTCCGGACGA
20110601C-007116 : GGGGGATTTTCCTTCTGCTGGCCTTTCATTTGGTGCGTTGGCCGGGAAACCCCGCGACCA
---------+---------+---------+---------+---------+---------+ 194
BFLT1_0098_B05.b : GGGGGATTTTCCTTCTGCTGGCCTTTCATTTGGTGCGTTGGCCGGGAAACCCCGCGACCA
OVR01_0003_D12.b : GGGGGATTTTCCTTCTGCTGGCCTTTCATTTGGTGCGTTGGCCGGGAAACCCCGCGACCA
TES01_0074_F01.b : GGGGGATTTTCCTTCTGCTGGCCTTTCATTTGGTGCGTTGGCCGGGAAACCCCGCGACCA
UTR01_0087_E01.b : GGGGGATTTTCCTTTTGCTGGCCTTTCATTTGGTGCGTTGGCCGGGAAACCCCGCGACCA
OVR01_0071_H07.b : GGGGGATTTTCCTTCTGCTGGCCTTTCATTTGGTGCGTTGGCCGGGAAACCCCGCGACCA
20110601C-007116 : CCCCTCACACCCGAGAACCGACTTGGAGGTAAAGGGATCCCCTTTGGAATGTGTGTGTGC
---------+---------+---------+---------+---------+---------+ 254
BFLT1_0098_B05.b : CCCCTCACACCCGAGAACCGACTTGGAGGTAAAGGGATCCCCTTTGGAATGTGTGTGTGC
OVR01_0003_D12.b : CCCCTCACACCCGAGAACCGACTTGGAGGTAAAGGGATCCCCTTTGGAATGTGTGTGTGC
TES01_0074_F01.b : CCCCTCACACCCGAGAACCGACTTGGAGGTAAAGGGATCCCCTTTGGAATGTGTGTGTGC
UTR01_0087_E01.b : CCCCTCACACCCGAGAACCGACTTGGAGGTAAAGGGATCCCCTTTGGAATGTGTGTGTGC
OVR01_0071_H07.b : CCCCTCACACCCGAGAACCGACTTGGAGGTAAAGGGATCCCCTTTGGAATGTGTGTGTGC
20110601C-007116 : GTGCCGGCCGGCGTCTCTGTTCTGAGTGTTTGTTTTCTGGGATGCGCGCTTTCGGTTTGC
---------+---------+---------+---------+---------+---------+ 314
BFLT1_0098_B05.b : GTGCCGGCCGGCGTCTCTGTTCTGAGTGTTTGTTTTCTGGGATGCGCGCTTTCGGTTTGC
OVR01_0003_D12.b : GTGCCGGCCGGCGTCTCTGTTCTGAGTGTTTGTTTTCTGGGATGCGCGCTTTCGGTTTGC
TES01_0074_F01.b : GTGCTGGCCGGCGTCTCTGTTCTGAGTGTTTGTTTTCTGGGATGCGCGCTTTCGGTTTGC
UTR01_0087_E01.b : GTGCCGGCCGGCGTCT**GTTCTGAGTGTTTGTTTTCTGGGATGCGCGCTTTCGGTTTGC
OVR01_0071_H07.b : GTGCCGGCCGGCGTC**TGTTCTGAGTGTTTGTTTTCTGGGATGCGCGCTTTCGGTTTGC
20110601C-007116 : AGCTGTCCTCCCAGACCGTAAGGACTGGGGGACTGTGATCAGTAGACGTGCTAGGAGGAT
---------+---------+---------+---------+---------+---------+ 374
BFLT1_0098_B05.b : AGCTGTCCTCCCAGACCGTAAGGACTGGGGGACTGTGATCAGTAGACGTGCTAGGAGGAT
OVR01_0003_D12.b : AGCTGTCCTCCCAGACCGTAAGGACTGGGGGACTGTGATCAGTAGACGTGCTAGGAGGAT
TES01_0074_F01.b : AGCTGTCCTCCCAGACCGTAAGGACTGGGGGACTGTGATCAGCAGACGTGCTAGGAGGAT
UTR01_0087_E01.b : AGCTGTCCTCCCAGACCGTAAGGACTGGGGGACTGTGATCAGTAGACGTGCTAGGAGGAT
OVR01_0071_H07.b : AGCTGTCCTCCCAGACCGTAAGGACTGGGGGACTGTGATCAGTAGACGTGCTAGGAGGAT
20110601C-007116 : CACAGGCTGCCGCCCTGGGGGACGCCCCGGGAGGTGGGGAGAGCCAGGTGCCTGGTGGTC
---------+---------+---------+---------+---------+---------+ 434
BFLT1_0098_B05.b : CACAGGCTGCCGCCCTGGGGGACGCCCCGGGAGGTGGGGAGAGCCAGGTGCCTGGTGGTC
OVR01_0003_D12.b : CACAGGCTGCCGCCCTGGGGGACGCCCCGGGAGGTGGGGAGAGCCAGGTGCCTGGTGGTC
TES01_0074_F01.b : CACAGGCTGCCGCCCTGGGGGACGCCCCGGGAGGTGGGGAGAGCCAGGCGCCTGGTGGTC
UTR01_0087_E01.b : CACAGGCTGCCGCCCTGGGGGACGCCCCGGGAGGTGGGGAGAGCCAGGTGCCTGGTGGTC
OVR01_0071_H07.b : CACAGGCTGCCGCCCTGGGGGACGCCCCGGGAGGTGGGGAGAGCCAGGTGCCTGGTGGTC
20110601C-007116 : TCCTTCTGTCGGTCAGAGGACCGAGTTCTGTTGTTGAAGCGAAAGCTTCCCCCTCCGCGG
---------+---------+---------+---------+---------+---------+ 494
BFLT1_0098_B05.b : TCCTTCTGTCGGTCAGAGGACCGAGTTCTGTTGTTGAAGCGAAAGCTTCCCCCTCCGCGG
OVR01_0003_D12.b : TCCTTCTGTCGGTCAGAGGACCGAGTTCTGTTGTTGAAGCGAAAGCTTCCCCCTCCGCGG
TES01_0074_F01.b : TCCTTCTGTCGGTCAGAGGACCGAGTTCTGTTGTTGAAGTGAAAGCTTCCCCCTCCGCGA
UTR01_0087_E01.b : TCCTTCTGTCGGTCAGAGGACCGAGTTCTGTTGTTGAAGCGAAAGCTTCCCCCTCCGCGG
OVR01_0071_H07.b : TCCTTCTGTCGGTCAGAGGACCGAGTTCTGTTGTTGAAGCGAAAGCTTCCCCCTCCGCGG
20110601C-007116 : CCGTCTGACTCTTTTGCCTGCTTGTGGAAGGCGCGGACGGGTCGCGTGTGTCTGGATCTG
---------+---------+---------+---------+---------+---------+ 554
BFLT1_0098_B05.b : CCGTCTGACTCTTTTGCCTGCTTGTGGAAGGCGCGGACGGGTCGCGTGTGTCTGGATCTG
OVR01_0003_D12.b : CCGTCTGACTCTTTTGCCTGCTTGTGGAAGGCGCGGACGGGTCGCGTGTGTCTGGATCTG
TES01_0074_F01.b : CCGTCTGACTCTTTTGCCTGCTTGTGGAAAGCGCGGACGGTTCGCGTGTGTCTGGATCTG
UTR01_0087_E01.b : CCGTCTGACTCTTTTGCCTGCTTGTGGAAGGCGCGGACGGGTCGCGTGTGTCTGGATCTG
OVR01_0071_H07.b : CCGTCTGACTCTTTTGCCTGCTTGTGGAAGGCGCGGACGGGTCGCGTGTGTCTGGATCTG
20110601C-007116 : TTGGTTTCTGTTTCGTGTGTCTTTGTCTTATGCGTCCTTGTCCCCAGTTTTAATATGGGA
---------+---------+---------+---------+---------+---------+ 614
BFLT1_0098_B05.b : TTGGTTTCTGTTTCGTGTGTCTTTGTCTTATGCGTCCTTGTCCCCAGTTTTAATATGGGA
OVR01_0003_D12.b : TTGGTTTCTGTTTCGTGTGTCTTTGTCTTATGCGTCCTTGTCCCCAGTTTTAATATGGGA
TES01_0074_F01.b : TTGGTTTCTGTTTCGTGTGTCTTTGCCTTATGCGTCCTTGTCCCCCGTTTTTATATGGAA
UTR01_0087_E01.b : TTGGTTTCTGTTTCGTGTGTCTTTGTCTTATGCGTCCTTGTCCCCAGTTTTAATATGGGA
OVR01_0071_H07.b : TTGGTTTCTGTTTCGTGTGTCTTTGTCTTATGCGTCCTTGTCCCCAGTTTTAATATGGGA
20110601C-007116 : CAGACGGTGACGA*CCCCCCCCCCCCTTAGTTTGACTCTCAACCATTTGGACTGAAGTTA
---------+---------+---------+---------+---------+---------+ 673
BFLT1_0098_B05.b : CAGACGGTGACGACCCCCCCCCCCCCTTAGTTTGACTCTNCACCATTTGGACTGAAGTAA
OVR01_0003_D12.b : CAGACGGTGACGA**CCCCCCCCCCCTTAGTTTGACTCTCAACCATTTGGACTGAAGTTA
TES01_0074_F01.b : CAGACCGGGGATACCCCCCCCCCCttattttgactcccacccttttggaatgaagtttaa
UTR01_0087_E01.b : CAGACGGTGACGA*CCCCCCCCCCTCTTAGTTTGACTCTCAACCATTTGGACTGAAGTTA
OVR01_0071_H07.b : CAGACGGTGACGA*CCCCCCCCCCCCTTAGTTTGACTCTCAACCATTTGGACTGAAGTTA
20110601C-007116 : AATCCAGGGCTCATAATTTGTCAGTTCAGGT*TAAGAAGGGACCTTTAATTCTGAGA*TT
---------+---------+---------+---------+---------+---------+ 731
BFLT1_0098_B05.b : AATCCAGGGCTCATAATTTGTCAGTTCAAGTTTAAGAAGGGACCTTTAATTCTGAGAATT
OVR01_0003_D12.b : AATCCAGGGCTCATAATTTGTCAGTTCAGGT*TAAGAAGGGACCTTTAATTCTGAGA*TT
TES01_0074_F01.b : tcccggggcccctaatttgccagttccgggttaaaaagggacctttaatttctgaatatt
UTR01_0087_E01.b : AATCCAGGGCTCATAATTTGTCAGTTCAGGT*TAAGAAGGGACCTTTAATTCTGAGA*TT
OVR01_0071_H07.b : AATCCCGGGCTCATAATTTGTCAGTTCAGGT*TAAGAAGGGACCTTTAATTCTGAGA*TT
20110601C-007116 : ATCCTGGCTGTTAAA*GCAATTATTTTTCAGACTG*GACCCGGCTCTCATCCTGATCAGG
---------+---------+---------+---------+---------+---------+ 789
BFLT1_0098_B05.b : ATCCTGGCTGGTAAAAGCAATTATTTTTCAGACTGGGACCCGGCTCTCATCCTGATCAGG
OVR01_0003_D12.b : ATCCTGGCTGTTAAA*GCAATTATTTTTCAGACTG*GACCCGGCTCTCATCCTGATCAGG
TES01_0074_F01.b : tcccgggctgttaaaccatttttttttttaaaaagggaccccggttctccttcttgtacg
UTR01_0087_E01.b : ATCCTGGCTGTTAAA*GCAATTATTTTTCAGACTG*GACCCCGCTCTCATCCTGATCAGG
OVR01_0071_H07.b : ATCCTGGCTGTTAAA*GCAATTATTTTTCAGACTG*GACCCGGCTCTCATCCTGATCAGG
20110601C-007116 : AGCCCTATATCCTTACATGGCAAGATTTGGCAGAAGATCCTCCGCCATGGATTAAACCAT
---------+---------+---------+---------+---------+---------+ 849
BFLT1_0098_B05.b : AACCCctatatccttacttggcaaaaattgggcaaaaaaatcctcccgccctggattaaa
OVR01_0003_D12.b : AGCCCTATATCCTTACATGGCAAGATTTGGCAGAAGATCCTCCGCCATGGATTAAACCAT
TES01_0074_F01.b : gaagcccttttttccttttttggaaaattttgggcaaaaattccccccccctggttttaa
UTR01_0087_E01.b : AGCCCTATATCCTTACATGGCAAGATTTGGCAGAAGATCCTCCGCCATGGATTAAACCAT
OVR01_0071_H07.b : AGCCCTATATCCTTACATGGCAAGATTTGGCAGAAGATCCTCCGCCATGGGattaaccca
20110601C-007116 : GGCTAAATAAACCCA.............................................
---------+---------+---------+---------+---------+---------+ 864
BFLT1_0098_B05.b : accatggctaaataaaccaaaaaagccagggtccccaagttctgggtcttggaaaaaaaa
OVR01_0003_D12.b : GGCTAAATAAACCAagaaagccagggtccccgagttctggctcttggagagaaaaacaaa
TES01_0074_F01.b : cccctgggtataaaaacacaagaaaacccccgccccccgaatttcgggctccttggaaaa
UTR01_0087_E01.b : GGCTAAATAAAACCAgaaaagcgggtcccccagttctggctcttggagaaaaaacaaaca
OVR01_0071_H07.b : tggcttaataaacccagaaagcccggtcccccagttctgggttcttggagagaaaaacaa
20110601C-007116 : ............................................................
---------+---------+---------+---------+---------+---------+ 864
BFLT1_0098_B05.b : aaaaacctctcgccaaaaaaagccaaccccctccctcgtattaaccccaaatttgagaac
OVR01_0003_D12.b : cactcggccaaaaaaagtcaagccctctcctcgtatctaccccggagattgaagaagctg
TES01_0074_F01.b : aaaacaaaacccccccgcccaaaaatatggacccccccccccctttttttccccccgaaa
UTR01_0087_E01.b : cttcgccaaaaaaagtcaagccctctccctctatctacccccaaaattgaggagctgccc
OVR01_0071_H07.b : aacactcggccccaaaaaagtcaagccctctccctcctatctaccccgaaaattgaggga
20110601C-007116 : ............................................................
---------+---------+---------+---------+---------+---------+ 864
BFLT1_0098_B05.b : tgcccaattgtgcggaaaccccaaccgtttcccccaccccccctccttttttgggacagg
OVR01_0003_D12.b : cccgaacttggcccgaaacccccaccctggttcccccccccccccccttccccttatttt
TES01_0074_F01.b : tttgagggggttcccattttgtgggggggccccccttttgtttccccccccccccccccc
UTR01_0087_E01.b : aatttggccggaacccaaccggttcccccccccccccctcccttttctgggccaagggtg
OVR01_0071_H07.b : cctgtcccactttggcccggaaccccaacctgtttccccccccacccccctcccttttct
20110601C-007116 : ............................................................
---------+---------+---------+---------+---------+---------+ 864
BFLT1_0098_B05.b : ggggttcaaagggaacccctttcccccctcggaacccccggggggaaggacctccttttg
OVR01_0003_D12.b : gggcaacagggggggcttgcaaaggggggaaccctttcttgcccccttcccgg
TES01_0074_F01.b : ttttttttcttaaagggggtttttcatgggggccccccccccccctctccttgaactccc
UTR01_0087_E01.b : cctcccagggggaccctttgccccctcctgggattcccgcgcgccgaaggaacctccttc
OVR01_0071_H07.b : ggggacaggggggcttccagggggaaccctttgcccccccccgggagctccccgggggcc
20110601C-007116 : ............................................................
---------+---------+---------+---------+---------+---------+ 864
BFLT1_0098_B05.b : gacaccaaaagggagggcccccccccgagggcaaaaaaaaaatgggaatttccccgcccc
OVR01_0003_D12.b :
TES01_0074_F01.b : ggggggagaagaccttttccccgggaatctattagggtggagggccccccccccccagcg
UTR01_0087_E01.b : ttgggaaccttaaacctgggggggggccccccccccggagcgcaaacaaataaaatt
OVR01_0071_H07.b : gaaagggacctgcttcctggggattccaaaaccttggggggccgcccccccccggaaacg
20110601C-007116 : ............................................................
---------+---------+---------+---------+---------+---------+ 864
BFLT1_0098_B05.b : cattggcccccccaccgcgggggcaattatacccccccccaatatggccctttttttccg
OVR01_0003_D12.b :
TES01_0074_F01.b : aaaaaaataattatattttttttctttcctccctttgttgtcccccttggggggggggga
UTR01_0087_E01.b :
OVR01_0071_H07.b : ggaaacaaatgaaaatccgggaccatttcccgc
20110601C-007116 : ............................................................
---------+---------+---------+---------+---------+---------+ 864
BFLT1_0098_B05.b : caccttttatttaaaaaaaaacacccccctcttctagaaaaccaccccccccgggggggg
OVR01_0003_D12.b :
TES01_0074_F01.b : gatctcacccccccacgaggccgcccctcttttccttccttttttttaatagaaaataac
UTR01_0087_E01.b :
OVR01_0071_H07.b :
20110601C-007116 : ............................................................
---------+---------+---------+---------+---------+---------+ 864
BFLT1_0098_B05.b : gacacactctttttctctccccccgtgtgg
OVR01_0003_D12.b :
TES01_0074_F01.b : cccccccctcctttgtaaagaa
UTR01_0087_E01.b :
OVR01_0071_H07.b :