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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-008435

Length: 793

Sequence:  [FASTA format sequence]
GCGATGTCAC CGGAAGACGA AGTAGGGAAG GCGCCAACCC GGGGGGCCCG ATCGAGTTGG
GACAGAACGA GGAGGAGGCG CAGGCAGGAG GCATGGCCGG ATGTCGCGGC CCGTAGCCCT
AAGCGCGGCG GGGGCGGCCG CGGCGGGGGC GGTGCTAGTG GCCGCCCTGC TCCTGTTGCG
GCCTGAGGAC GCAGGGCTGG GGGCCGGGTC CAGCATGGCC GAGACAGAAG CGCTGCCGAA
GCTTCGGGAA GACTTCAGGA TGCAGAATAA ATCCGTCTTT ATTCTGGGCG CCAGCGGGGA
AACCGGCCGA GTGCTGCTGA AGGAAATCCT GGAACAGAGC CTATTTTCCA AAGTCACGCT
TATTGGCCGG AGGAAGCTCA CATTCGACGA GGAAGCTTAT AAAAACGTGA ATCAAGAAGT
GGTGGACTTT GAAAAATTGG ATGACTACGC TTCTGCCTTT CAAGGTCATG AGGTTGGATT
CTGTTGCCTG GGTACTACCA GAAGAAAAGC TGGGGCGGAG GGATTTGTTC GTGTTGATCG
AGATTACATC CTCAAGTCTG CAGAGCTGGC CAAAGCTGGA GGGTGCAAAC ATTTCAACTT
GCTGTCCGCT AAGGGAGCTG ATAAGTCAAG CAACTTTTTA TATCTGCAAG TCAAGGGAGA
AGTGGAAGCT AGAATTGAAG AATTAAAATT TGATCGTTAC TCCATATTTA GGCCAGGAGT
TCTGTTATGT GATAGGCAAG AATCTCGCCC AGGTGAATGG TTGGTTAGGA AGTTCTTTGG
CTCCTTACCA GAA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		HTATIP2	oxidoreductase HTATIP2 isoform a [Homo sapiens].	385	e-107	O
		HTATIP2	oxidoreductase HTATIP2 isoform b [Homo sapiens].	372	e-103	O
		HTATIP2	oxidoreductase HTATIP2 isoform b [Homo sapiens].	372	e-103	O
		HTATIP2	oxidoreductase HTATIP2 isoform b [Homo sapiens].	372	e-103	O
		HTATIP2	oxidoreductase HTATIP2 isoform c [Homo sapiens].	192	2e-49	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Htatip2	oxidoreductase HTATIP2 isoform a [Mus musculus].	363	e-101	O
		Htatip2	oxidoreductase HTATIP2 isoform b [Mus musculus].	355	3e-98	O
		Htatip2	oxidoreductase HTATIP2 isoform b [Mus musculus].	355	3e-98	O
		Htatip2	oxidoreductase HTATIP2 isoform b [Mus musculus].	355	3e-98	O
		Htatip2	oxidoreductase HTATIP2 isoform b [Mus musculus].	355	3e-98	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC476886	PREDICTED: similar to HIV-1 Tat interactive protein 2, 30kDa [Canis familiaris].	367	e-102	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		HTATIP2	oxidoreductase HTATIP2 [Bos taurus].	376	e-104	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100521603	PREDICTED: oxidoreductase HTATIP2-like [Sus scrofa].	188	3e-48	O
		LOC100626454	PREDICTED: hypothetical protein LOC100626454 [Sus scrofa].	188	3e-48
		LOC100521771	PREDICTED: hypothetical protein LOC100521771 [Sus scrofa].	148	4e-36	O

Alignment:      TOP

20110601C-008435 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRM1_0185_H10.b : gagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0210_E11.b :     tcgttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0145_C10.b :                 nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0198_E03.b :                                                          tcx
LVRM1_0036_A10.b :                                                        nagtt


20110601C-008435 : ..GCGATGTCACCGGAAGACGAAGTAGGGAAGGCGCCAACCCGGG**GGGCCCGATCGAG
                   ---------+---------+---------+---------+---------+---------+ 56
OVRM1_0185_H10.b : xxGCGATGTCACCGGAAGACGAAGTAGGGAAGGCGCCAACCCGGG**GGGCCCGATCGAG
OVRM1_0210_E11.b : xxxxGATGTCACCGGAAGACGAAGTAGGGAAGGCGCCAACCCGGGAGGGGCCCGATCGAG
LVRM1_0145_C10.b : xxxxxxxxxxxxxxxxxGACGAAGTAGGGAAGGCGCCAACCCGGG**GGGCCCGATCGAG
LVRM1_0198_E03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCGATCGAG
LVRM1_0036_A10.b : tgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAG


20110601C-008435 : TTGGGACAGAACGAGGAGGAGGCGCAGGCAGGAGGCATGGCCGGATGTCGCGGCCCGTAG
                   ---------+---------+---------+---------+---------+---------+ 116
OVRM1_0185_H10.b : TTGGGACAGAACGAGGAGGAGGCGCAGGCAGGAGGCATGGCCGGATGTCGCGGCCCGTAG
OVRM1_0210_E11.b : TTGGGACAGAACGAGGAGGAGGCGCAGGCAGGAGGCATGGCCGGATGTCGCGGCCCGTAG
LVRM1_0145_C10.b : TTGGGACAGAACGAGGAGGAGGCGCAGGCAGGAGGCATGGCCGGATGTCGCGGCCCGTAG
LVRM1_0198_E03.b : TTGGGACAGAACGAGGAGGAGGCGCAGGCAGGAGGCATGGCCGGATGTCGCGGCCCGTAG
LVRM1_0036_A10.b : TTGGGACAGAACGAGGAGGAGGCGCAGGCACGAGGCATGGCCGGATGTCGCGGCCCGTAA


20110601C-008435 : CCCTAAGCGCGGCGGGGGCGGCCGCGGCGGGGGCGGTGCTAGTGGCCGCCCTGCTCCTGT
                   ---------+---------+---------+---------+---------+---------+ 176
OVRM1_0185_H10.b : CCCTAAgcgcggcgggggcggccgcggcgggggcggTGCTAGTGGCCGCCCTGCTCCTGT
OVRM1_0210_E11.b : CCCTAAgcgcggcgggggcggccgcggcgggggcggTGCTAGTGGCCGCCCTGCTCCTGT
LVRM1_0145_C10.b : CCCTAAgcgcggcgggggcggccgcggcgggggcggTGCTAGTGGCCGCCCTGCTCCTGT
LVRM1_0198_E03.b : CCCTAAgcgcggcgggggcggccgcggcgggggcggTGCTAGTGGCCGCCCTGCTCCTGT
LVRM1_0036_A10.b : CCCTAAgcgcggcgggggcggccgcggcgggggcggTGCTAGTGGCCGCCCTGCTCCTGT


20110601C-008435 : TGCGGCCTGAGGACGCAGGGCTGGGGGCCGGGTCCAGCATGGCCGAGACAGAAGCGCTGC
                   ---------+---------+---------+---------+---------+---------+ 236
OVRM1_0185_H10.b : TGCGGCCTGAGGACGCAGGGCTGGGGGCCGGGTCCAGCATGGCCGAGACAGAAGCGCTGC
OVRM1_0210_E11.b : TGCGGCCTGAGGACGCAGGGCTGGGGGCCGGGTCCAGCATGGCCGAGACAGAAGCGCTGC
LVRM1_0145_C10.b : TGCGGCCTGAGGACGCAGGGCTGGGGGCCGGGTCCAGCATGGCCGAGACAGAAGCGCTGC
LVRM1_0198_E03.b : TGCGGCCTGAGGACGCAGGGCTGGGGGCCGGGTCCAGCATGGCCGAGACAGAAGCGCTGC
LVRM1_0036_A10.b : TGCGGCCTGAGGACGCAGGGCTGGGGGCCGGGTCCAGCATGGCCGAGACAGAAACGCTGC


20110601C-008435 : CGAAGCTTCGGGAAGACTTCAGGATGCAGAATAAATCCGTCTTTATTCTGGGCGCCAGCG
                   ---------+---------+---------+---------+---------+---------+ 296
OVRM1_0185_H10.b : CGAAGCTTCGGGAAGACTTCAGGATGCAGAATAAATCCGTCTTTATTCTGGGCGCCAGCG
OVRM1_0210_E11.b : CGAAGCTTCGGGAAGACTTCAGGATGCAGAATAAATCCGTCTTTATTCTGGGCGCCAGCG
LVRM1_0145_C10.b : CGAAGCTTCGGGAAGACTTCAGGATGCAGAATAAATCCGTCTTTATTCTGGGCGCCAGCG
LVRM1_0198_E03.b : CGAAGCTTCGGGAAGACTTCAGGATGCAGAATAAATCCGTCTTTATTCTGGGCGCCAGCG
LVRM1_0036_A10.b : CGAAGCTTCGGGAAGACTTCACGATGCAGAATAAATACGTCTTTATTCTGGGCGCCAGCG


20110601C-008435 : GGGAAACCGGCCGAGTGCTGCTGAAGGAAATCCTGGAACAGAGCCTATTTTCCAAAGTCA
                   ---------+---------+---------+---------+---------+---------+ 356
OVRM1_0185_H10.b : GGGAAACCGGCCGAGTGCTGCTGAAGGAAATCCTGGAACAGAGCCTATTTTCCAAAGTCA
OVRM1_0210_E11.b : GGGAAACCGGCCGAGTGCTGCTGAAGGAAATCCTGGAACAGAGCCTATTTTCCAAAGTCA
LVRM1_0145_C10.b : GGGAAACCGGCCGAGTGCTGCTGAAGGAAATCCTGGAACAGAGCCTATTTTCCAAAGTCA
LVRM1_0198_E03.b : GGGAAACCGGCCGAGTGCTGCTGAAGGAAATCCTGGAACAGAGCCTATTATCCAAAGTCA
LVRM1_0036_A10.b : GGGAAACCGGCCGAGTGCTGCTGAATGAAATCCTGGAACAGAGCCTATTTTCCAAAGTCA


20110601C-008435 : CGCTTATTGGCCGGAGGAAGCTCACATTCGACGAGGAAGCTTATAAAAACGTGAATCAAG
                   ---------+---------+---------+---------+---------+---------+ 416
OVRM1_0185_H10.b : CGCTTATTGGCCGGAGGAAGCTCACATTCGACGAGGAAGCTTATAAAAACGTGAATCAAG
OVRM1_0210_E11.b : CGCTCATTGGCCGGAGGAAGCTCACATTCGACGAGGAAGCTTATAAAAACGTGAATCAAG
LVRM1_0145_C10.b : CGCTTATTGGCCGGAGGAAGCTCACATTCGACGAGGAAGCTTATAAAAACGTGAATCAAG
LVRM1_0198_E03.b : CGCTCATTGGCCGGGGGAAGCTCACATTCGACGAGGAAGCTTATAAAAACGTGAATCAAG
LVRM1_0036_A10.b : CGCTTATTGGCCGGAGGAAGCTCACATTCTACGAGGAAGCTTATAAAAACGTGAATCAAG


20110601C-008435 : AAGTGGTGGACTTTGAAAAATTGGATGACTACGCTTCTGCCTTTCAAGGTCATGAGGTTG
                   ---------+---------+---------+---------+---------+---------+ 476
OVRM1_0185_H10.b : AAGTGGTGGACTTTGAAAAATTGGATGACTACGCTTCTGCCTTTCAAGGTCATGAGGTTG
OVRM1_0210_E11.b : AAGTGGTGGACTTTGAAAAATTGGATGACTACGCTTCTGCCTTTCAAGGTCATGACGTTG
LVRM1_0145_C10.b : AAGTGGTGGACTTTGAAAAATTGGATGACTACGCTTCTGCCTTTCAAGGTCATGAGGTTG
LVRM1_0198_E03.b : AAGTGGTGGACTTTGAAAAATTGGATGACTACGCTTCTGCCTTTCAAGGTCATGACGTTG
LVRM1_0036_A10.b : AAGTGGTGGACTTTGAAAAATTGGATGACTACGCTTCTGCCTTTCAAGGTCATGAGGTTG


20110601C-008435 : GATTCTGTTGCCTGGGTACTACCAGAAGAAAAGCTGGGGCGGAGGGATTTGTTCGTGTTG
                   ---------+---------+---------+---------+---------+---------+ 536
OVRM1_0185_H10.b : GATTCTGTTGCCTGGGTACTACCAGAAGAAAAGCTGGGGCGGAGGGATTTGTTCGTGTTG
OVRM1_0210_E11.b : GATTCTGTTGCCTGGGTACTACCAGAAGAAAAGCTGGGGCGGAGGGATTTGTTCGTGTTG
LVRM1_0145_C10.b : GATTCTGTTGCCTGGGTACTACCAGAAGAAAAGCTGGGGCGGAGGGATTTGTTCGTGTTG
LVRM1_0198_E03.b : GATTCTGTTGCCTGGGTACTACCAGAAGAAAAGCTGGGGCGGAGGGATTTGTTCGTGTTG
LVRM1_0036_A10.b : GATTCTGTTGCCTGGGTACTACCAAAAGAAAAACTGGGGCGGAGGGATTTGTTCGTGTTG


20110601C-008435 : ATCGAGATTACATCCTCAAGTCTGCAGAGCTGGCCAAAGCTGGAGGGTGCAAACATTTCA
                   ---------+---------+---------+---------+---------+---------+ 596
OVRM1_0185_H10.b : ATCGAGATTACATCCTCAAGTCTGCAGAGCTGGCCAAAGCTGGAGGGTGCAAACATTTCA
OVRM1_0210_E11.b : ATCGAGATTACGTCCTCAAGTCTGCAGAGCTGGCCAAAGCTGGAGGGTGCAAACATTTCA
LVRM1_0145_C10.b : ATCGAGATTACATCCTCAAGTCTGCAGAGCTGGCCAAAGCTGGAGGGTGCAAACATTTCA
LVRM1_0198_E03.b : ATCGAGATTACGTCCTCAAGTCTGCAGAGCTGGCCAAAGCTGGAGGGTGCAAACATTTCA
LVRM1_0036_A10.b : ATCTAGATTACATCCTCTAGTCTGCAGAGCTGGACAAAGCTGGAGGGTGCCAACATTTCA


20110601C-008435 : ACTTGCTGTCCGCTAAGGGAGCTGATAAGTCAAGCAACTTTTTATATCTGCAAGTCAAGG
                   ---------+---------+---------+---------+---------+---------+ 656
OVRM1_0185_H10.b : ACTTGCTGTCCGCTAAGGGAGCTGATAAGTCAAGCAACTTTTTATATCTGCAAGTCAAGG
OVRM1_0210_E11.b : ACTTGCTGTCCGCTAANGGAGCTGAATAGTCAAGCAACTTTTTATATCTGCAAGTCAAGG
LVRM1_0145_C10.b : ACTTGCTGTCCGCTAAGGGAGCTGATAAGTCAAGCAACTTTTTATATCTGCAAGTCAAGG
LVRM1_0198_E03.b : ACTTGCTGTCCGCTAAGGGAGCTGATAAGTCAAGCAACTTTTTATATCTGCAAGTCAAGG
LVRM1_0036_A10.b : ACTTGCTGTCCGCTAAGGGAGCTGATGAGTCAAGCAACTTTTTATATCTGCAAGTGCATG


20110601C-008435 : GAGAAGTGGAAGCTAGAATTGAAGAATTAAAATTTGATCGTTACTCCATATTTAGGCCAG
                   ---------+---------+---------+---------+---------+---------+ 716
OVRM1_0185_H10.b : GAGAAGTGGAAGCTAGAATTGAAGAATTAAAATTTGATCGTTACTCCATATTTAGGCCAG
OVRM1_0210_E11.b : GAGAAGTGGAAGCTAGAATTGAAGAATTAAAATTTGATCGTTACTCCATATTTAGGCCAG
LVRM1_0145_C10.b : GAGAAGTGGAAGCTAGAATTGAAGAATT*AAATTTGATCGTTACTCCATATTTAGGCCAG
LVRM1_0198_E03.b : GAGAAGTGGAAGCTAGAATTGAAGAATTAAAATTTGATCGTTACTCCATATTTAGGCCAG
LVRM1_0036_A10.b : GAGAACTGTAAGCTAGAATGTGAGAATTAGAATTTGATCGTTACTCCATATTCTAGCCAA


20110601C-008435 : GAGTTCTGTT*ATGTGATAGGCAAGAATCTCGCCCAGGTGAATGGTTGGTTAGGAAGTTC
                   ---------+---------+---------+---------+---------+---------+ 775
OVRM1_0185_H10.b : GAGTTCTGTT*ATGTGATAGGCAAGAATCTCGCCCAGGTGAATGGTTGGTTAGGAAGTTT
OVRM1_0210_E11.b : GAatcttgggccagcggacactctgtgccagtgctgacttttggtagagcg        
LVRM1_0145_C10.b : GAGTTCTGTTTATGTGATAGCAAAG*ATCTCGCCCAGGTGAATGGGTTGGTAGGAAAGTC
LVRM1_0198_E03.b : GAGTTCTGTT*ATGTGATAGGCAAGAATCTCGCCCAGGTGAATGGTTGGTTAGGAAGTTC
LVRM1_0036_A10.b : GGTTGCTGTT*ATGTGATACGCAAGAATCTCGCCCAGCTGAATGGTTGGcttatgagttc


20110601C-008435 : TTTGGCTCCTTACCAGAA..........................................
                   ---------+---------+---------+---------+---------+---------+ 793
OVRM1_0185_H10.b : CTTGGCTCCTTACCAGAA                                         
OVRM1_0210_E11.b :                                                             
LVRM1_0145_C10.b : TTTGGCTCCTTACCAGAtcttg                                     
LVRM1_0198_E03.b : TTTGG                                                      
LVRM1_0036_A10.b : cttcggccccgtaccagaatcttgagccagctgaaact