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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-008692

Length: 1,006

Sequence:  [FASTA format sequence]
GCATTGAGTT GCTGAGCCAA GTGGGAGACA GCCTTTCCTA AGGTTGAGAG AGACCAGCAG
ACAGCCATCA TGGCGGGGAA GCCCATTCTT CACTATTTCA ATGGCCGAGG CAGAATGGAG
TGTATCCGGT GGCTCCTGGC TGCAGCTGGA GTGGAGTTTG AAGAGAAATT TATTAAGACT
CCAGAAGACC TGGATAAGTT AACAAATGAT GGGAGTTTGC TGTTCCAGCA AGTGCCCATG
GTTGAGATTG ACGGGATGAA GCTGGTGCAG ACCAGGGCCA TCCTCAACTA CATCGCCACC
AAGTACAACC TCTACGGGAA GGACGCCAAG GAGAGAGCCC TGATTGATAT GTATACAGAA
GGTGTGGCAG ATTTGGGTGA AATGATCTTG CTGTTGCCAC TGTGCCCACC CAATGAAAAA
GATGCCAAGG TGGCCTCGAT CAAAGAAAAA TCGACAAACC GTTATCTTCC TGCATTTGAA
AAAGTGTTGA AGAGCCATGG ACAAGACTAC CTTGTGGGCA ACAAGCTGAG CAGGGCTGAC
ATCCAGCTGG TTGAACTTCT CTACTACGTG GAAGAGCTGG ACCCCAGCCT GCTGGCCAAC
TTCCCTCTGC TGAAGGCCCT GAAAACCAGA GTCAGCAACC TCCCCACGGT GAAGAAGTTT
CTGCAGCCTG GCAGCCAGAG GAAGCCTCCC ATGGATGAGA AAAAATTAGA AGAAGCCAAG
AATATTTTCC GGATTAAATA AAGCCGGCTG AGTGTCCCAG GACACCCAGG ACCAATCTTC
TGAAAGTTGC TATCAATCAA CTGCTTGACC TAAATGTAGA TCCCAGTTAT CGTCAGTCTA
ATAAATGTTT CCACAGTGTA AGTGTTCATT TCATTAGAAT TCAGATTTAG ATGCAAAACA
ATCAATTTTG TTTTTGTTCG CACGCAATAT CCTGATCTTC TCCCGGAATG TACCTGAAAC
TTAAACCTAA TTAAAACGAA GGCAAAACCA AAAAAAAAAA AAAAAA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		GSTA1	glutathione S-transferase A1 [Homo sapiens].	355	3e-98	O
		GSTA3	glutathione S-transferase A3 [Homo sapiens].	351	5e-97	O
		GSTA2	glutathione S-transferase A2 [Homo sapiens].	341	5e-94	O
		GSTA5	glutathione S-transferase A5 [Homo sapiens].	336	2e-92	O
		GSTA4	glutathione S-transferase A4 [Homo sapiens].	247	1e-65	O
		GSTP1	glutathione S-transferase P [Homo sapiens].	82	8e-16	O
		HPGDS	hematopoietic prostaglandin D synthase [Homo sapiens].	75.5	7e-14	O
		GSTM3	glutathione S-transferase Mu 3 [Homo sapiens].	63.2	4e-10	O
		GSTM2	glutathione S-transferase Mu 2 isoform 1 [Homo sapiens].	56.2	5e-08	O
		GSTM4	glutathione S-transferase Mu 4 isoform 1 [Homo sapiens].	53.1	4e-07	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Gsta2	glutathione S-transferase A2 [Mus musculus].	330	8e-91	O
		Gsta1	glutathione S-transferase A1 [Mus musculus].	330	1e-90	O
		Gm3776	predicted gene 3776 [Mus musculus].	328	4e-90	O
		Gm10639	hypothetical protein LOC100042314 [Mus musculus].	326	2e-89	O
		Gsta3	glutathione S-transferase A3 [Mus musculus].	325	4e-89	O
		Gsta3	glutathione S-transferase A3 [Mus musculus].	325	4e-89	O
		Gsta4	glutathione S-transferase A4 [Mus musculus].	258	4e-69	O
		Gstp1	glutathione S-transferase P 1 [Mus musculus].	89.4	4e-18	O
		BC021614	hypothetical protein LOC225884 [Mus musculus].	88.2	9e-18	O
		Gm3934	PREDICTED: glutathione S-transferase P 2-like [Mus musculus].	85.9	5e-17	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC474938	PREDICTED: similar to Glutathione S-transferase A3-3 (GST class-alpha) [Canis familiaris].	368	e-102	O
		LOC481841	PREDICTED: similar to Glutathione S-transferase 5.7 (GST 5.7) (GST class-alpha) (GST A4-4) (GSTA4-4) [Canis familiaris].	276	3e-74	O
		LOC610304	PREDICTED: similar to Glutathione S-transferase 5.7 (GST 5.7) (GST class-alpha) (GST A4-4) (GSTA4-4) [Canis familiaris].	260	2e-69	O
		LOC474939	PREDICTED: similar to glutathione S-transferase A4 isoform 1 [Canis familiaris].	247	1e-65	O
		LOC474939	PREDICTED: similar to glutathione S-transferase A4 isoform 2 [Canis familiaris].	247	1e-65	O
		LOC478400	PREDICTED: similar to glutathione S-transferase A4 isoform 1 [Canis familiaris].	245	5e-65	O
		LOC606977	PREDICTED: similar to glutathione S-transferase A4 isoform 1 [Canis familiaris].	154	1e-37	O
		LOC610297	PREDICTED: similar to Glutathione S-transferase A3-3 (GST class-alpha) [Canis familiaris].	119	3e-27	O
		LOC478400	PREDICTED: similar to glutathione S-transferase A4 isoform 2 [Canis familiaris].	116	4e-26	O
		LOC606977	PREDICTED: similar to glutathione S-transferase A4 isoform 2 [Canis familiaris].	114	2e-25	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		GSTA3	glutathione S-transferase A1 [Bos taurus].	371	e-103	O
		GSTA5	glutathione S-transferase A5 [Bos taurus].	339	3e-93	O
		GSTA1	glutathione S-transferase A2 [Bos taurus].	336	2e-92	O
		GSTA3	glutathione S-transferase A4 [Bos taurus].	262	4e-70	O
		GSTA4	glutathione S-transferase A4 [Bos taurus].	248	6e-66	O
		GSTP1	glutathione S-transferase P [Bos taurus].	88.2	1e-17	O
		LOC525938	PREDICTED: glutathione S-transferase, pi 1-like [Bos taurus].	84	2e-16	O
		LOC525938	PREDICTED: glutathione S-transferase, pi 1-like [Bos taurus].	84	2e-16	O
		HPGDS	PREDICTED: prostaglandin D2 synthase, hematopoietic-like [Bos taurus].	67	2e-11	O
		GSTM3	glutathione S-transferase mu 3 [Bos taurus].	62.8	5e-10	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		GSTA1	glutathione S-transferase alpha M14 [Sus scrofa].	400	e-112	O
		GSTA2	glutathione S-transferase A2 [Sus scrofa].	398	e-111	O
		LOC100526118	PREDICTED: glutathione S-transferase A1-like [Sus scrofa].	357	4e-99	O
		LOC100623696	PREDICTED: glutathione S-transferase A4-like [Sus scrofa].	266	2e-71	O
		LOC100510917	PREDICTED: glutathione S-transferase A4-like [Sus scrofa].	266	2e-71	O
		GSTA4	glutathione S-transferase A4 [Sus scrofa].	248	4e-66	O
		LOC100511647	PREDICTED: glutathione S-transferase alpha M14-like [Sus scrofa].	228	4e-60	O
		LOC100525731	PREDICTED: glutathione S-transferase P 1-like [Sus scrofa].	91.7	6e-19
		LOC100623584	PREDICTED: hematopoietic prostaglandin D synthase-like [Sus scrofa].	70.5	1e-12	O
		LOC100514231	PREDICTED: glutathione S-transferase Mu 5-like [Sus scrofa].	61.2	9e-10	O

Alignment:      TOP

20110601C-008692 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LVR01_0074_H06.b : aggcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0013_B11.b :                                ttgtcxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0068_A06.b :       gcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0130_H10.b :                                        ncagtgtcxxxxxxxxxxxxx


20110601C-008692 : ..........................GCATTGAGTTGCTGAGCCAAGTGGGAGACAGCCT
                   ---------+---------+---------+---------+---------+---------+ 34
LVR01_0074_H06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGCATTGAGTTGCTGAGCCAAGTGGGAGACAGCCT
LVRM1_0013_B11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxttGAGTTGCTGAGCCAAGTGGGAGACAGCCT
LVR01_0068_A06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGTTGCTGAGCCAAGTGGGAGACAGCCT
OVRM1_0130_H10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGCCAAGTGGGAGACAGCCT


20110601C-008692 : TTCCTAAGGTTGAGAGAGACCAGCAGACAGCCATCATGGCGGGGAAGCCCATTCTTCACT
                   ---------+---------+---------+---------+---------+---------+ 94
LVR01_0074_H06.b : TTCCTAAGGTTGAGAGAGACCAGCAGACAGCCATCATGGCGGGGAAGCCCATTCTTCACT
LVRM1_0013_B11.b : TTCCTAAGGTTGAGAGAGACCAGCAGACAGCCATCATGGCGGGGAAGCCCATTCTTCACT
LVR01_0068_A06.b : TTCCTAAGGTTGAGAGAGACCAGCAGACAGCCATCATGGCGGGGAAGCCCATTCTTCACT
OVRM1_0130_H10.b : TTCCTAAGGTTGAGAGAGACCAGCAGACAGCCATCATGGCGGGGAAGCCCATTCTTCACT


20110601C-008692 : ATTTCAATGGCCGAGGCAGAATGGAGTGTATCCGGTGGCTCCTGGCTGCAGCTGGAGTGG
                   ---------+---------+---------+---------+---------+---------+ 154
LVR01_0074_H06.b : ATTTCAATGGCCGAGGCAGAATGGAGTGTATCCGGTGGCTCCTGGCTGCAGCTGGAGTGG
LVRM1_0013_B11.b : ATTTCAATGGCCGAGGCAGAATGGAGTGTATCCGGTGGCTCCTGGCTGCAGCTGGAGTGG
LVR01_0068_A06.b : ATTTCAATGGCCGAGGCAGAATGGAGTGTATCCGGTGGCTCCTGGCTGCAGCTGGAGTGG
OVRM1_0130_H10.b : ATTTCAATGGCCGAGGCAGAATGGAGTGTATCCGGTGGCTCCTGGCTGCAGCTGGAGTGG


20110601C-008692 : AGTTTGAAGAGAAATTTATTAAGACTCCAGAAGACCTGGATAAGTTAACAAATGATGGGA
                   ---------+---------+---------+---------+---------+---------+ 214
LVR01_0074_H06.b : AGTTTGAAGAGAAATTTATTAAGACTCCAGAAGACCTGGATAAGTTAACAAATGATGGGA
LVRM1_0013_B11.b : AGTTTGAAGAGAAATTTATTAAGACTCCAGAAGACCTGGATAAGTTAACAAATGATGGGA
LVR01_0068_A06.b : AGTTTGAAGAGAAATTTATTAAGACTCCAGAAGACCTGGATAAGTTAACAAATGATGGGA
OVRM1_0130_H10.b : AGTTTGAAGAGAAATTTATTAAGACTCCAGAAGGCCTGGATAAGTTAACAAATGATGGGA


20110601C-008692 : GTTTGCTGTTCCAGCAAGTGCCCATGGTTGAGATTGACGGGATGAAGCTGGTGCAGACCA
                   ---------+---------+---------+---------+---------+---------+ 274
LVR01_0074_H06.b : GTTTGCTGTTCCAGCAAGTGCCCATGGTTGAGATTGACGGGATGAAGCTGGTGCAGACCA
LVRM1_0013_B11.b : GTTTGCTGTTCCAGCAAGTGCCCATGGTTGAGATTGACGGGATGAAGCTGGTGCAGACCA
LVR01_0068_A06.b : GTTTGCTGTTCCAGCAAGTGCCCATGGTTGAGATTGACGGGATGAAGCTGGTGCAGACCA
OVRM1_0130_H10.b : GTTTGCTGTTCCAGCAAGTGCCCATGGTTGAGATTGACGGGATGAAGCTGGTGCAGACCA


20110601C-008692 : GGGCCATCCTCAACTACATCGCCACCAAGTACAACCTCTACGGGAAGGACGCCAAGGAGA
                   ---------+---------+---------+---------+---------+---------+ 334
LVR01_0074_H06.b : GGGCCATCCTCAACTACATCGCCACCAAGTACAACCTCTACGGGAAGGACGCCAAGGAGA
LVRM1_0013_B11.b : GGGCCATCCTCAACTACATCGCCACCAAGTACAACCTCTACGGGAAGGACGCCAAGGAGA
LVR01_0068_A06.b : GGGCCATCCTCAACTACATCGCCACCAAGTACAACCTCTACGGGAAGGACGCCAAGGAGA
OVRM1_0130_H10.b : GGGCCATCCTCAACTACATCGCCACCAAGTACAACCTCTACGGGAAGGACGCCAAGGAGA


20110601C-008692 : GAGCCCTGATTGATATGTATACAGAAGGTGTGGCAGATTTGGGTGAAATGATCTTGCTGT
                   ---------+---------+---------+---------+---------+---------+ 394
LVR01_0074_H06.b : GAGCCCTGATTGATATGTATACAGAAGGTGTGGCAGATTTGGGTGAAATGATCTTGCTGT
LVRM1_0013_B11.b : GAGCCCTGATTGATATGTATACAGAAGGTGTGGCAGATTTGGGTGAAATGATCTTGCTGT
LVR01_0068_A06.b : GAGCCCTGATTGATATGTATACAGAAGGTGTGGCAGATTTGGGTGAAATGATCTTGCTGT
OVRM1_0130_H10.b : GAGCCCTGATTGATATGTATACAGAAGGTGTGGCAGATTTGGGTGAAATGATCTTGCTGT


20110601C-008692 : TGCCACTGTGCCCACCCAATGAAAAAGATGCCAAGGTGGCCTCGATCAAAGAAAAATCGA
                   ---------+---------+---------+---------+---------+---------+ 454
LVR01_0074_H06.b : TGCCACTGTGCCCACCCAATGAAAAAGATGCCAAGGTGGCCTCGATCAAAGAAAAATCGA
LVRM1_0013_B11.b : TGCCACTGTGCCCACCCAATGAAAAAGATGCCAAGGTGGCCTCGATCAAAGAAAAATCGA
LVR01_0068_A06.b : TGCCACTGTGCCCACCCAATGAAAAAGATGCCAAGGTGGCCTCGATCAAAGAAAAATCGA
OVRM1_0130_H10.b : TGCCACTGTGCCCACCCAATGAAAAAGATGCCAAGGTGGCCTCGACCAAAGAAAAATCGA


20110601C-008692 : CAAACCGTTATCTTCCTGCATTTGAAAAAGTGTTGAAGAGCCATGGACAAGACTACCTTG
                   ---------+---------+---------+---------+---------+---------+ 514
LVR01_0074_H06.b : CAAACCGTTATCTTCCTGCATTTGAAAAAGTGTTGAAGAGCCATGGACAAGACTACCTTG
LVRM1_0013_B11.b : CAAACCGTTATCTTCCTGCATTTGAAAAAGAGTTGAAGAGCCATGGACAAGACTACCTTG
LVR01_0068_A06.b : CAAACCGTTATCTTCCTGCATTTGAAAAAGTGTTGAAGAGCCATGGACAAGACTACCTTG
OVRM1_0130_H10.b : CAAACCGTTATCTTCCTGCATTTGAAAAAGAGTTGAAGAGCCATGGACAAGACTACCTTG


20110601C-008692 : TGGGCAACAAGCTGAGCAGGGCTGACATCCAGCTGGTTGAACTTCTCTACTACGTGGAAG
                   ---------+---------+---------+---------+---------+---------+ 574
LVR01_0074_H06.b : TGGGCAACAAGCTGAGCAGGGCTGACATCCAGCTGGTTGAACTTCTCTACTACGTGGAAG
LVRM1_0013_B11.b : TGGGCAACAAGCTGAGCAGGGCTGACATCCAGCTGGTTGAACTTCTCTACTACGTGGAAG
LVR01_0068_A06.b : TGGGCAACAAGCTGAGCAGGGCTGACATCCAGCTGGTTGAACTTCTCTACTACGTGGAAG
OVRM1_0130_H10.b : TGGGCAACAAGCTGAGCAGGGCTGACATCCAGCTGGTTGAACTTCTCTACTACGTGGAAG


20110601C-008692 : AGCTGGACCCCAGCCTGCTGGCCAACTTCCCTCTGCTGAAGGCCCTGAAAACCAGAGTCA
                   ---------+---------+---------+---------+---------+---------+ 634
LVR01_0074_H06.b : AGCTGGACCCCAGCCTGCTGGCCAACTTCCCTCTGCTGAAGGCCCTGAAAACCAGAGTCA
LVRM1_0013_B11.b : AGCTGGACCCCAGCCTGCTGGCCAACTTCCCTCTGCTGAAGGCCCTGAAAACCAGAGTCA
LVR01_0068_A06.b : AGCTGGACCCCAGCCTGCTGGCCAACTTCCCTCTGCTGAAGGCCCTGAAAACCAGAGTCA
OVRM1_0130_H10.b : AGCTGGACCCCAGCCTGCTGGCCAACTTCTCTCTGCTGAAGGCCCTGAAAACCAGAGTCA


20110601C-008692 : GCAACCTCCCCACGGTGAAGAAGTTTCTGC*AGCCTGGCAGCCAGAGGAAGCCTCCCATG
                   ---------+---------+---------+---------+---------+---------+ 693
LVR01_0074_H06.b : GCAACCTCCCCACGGTGAAGAAGTTTCTGC*AGCCTGGCAGCCAGAGGAAGCCTCCCATG
LVRM1_0013_B11.b : GCAACCTGCCCACGGTGGAAGAATTTCTGCGAGCCTGGCACCCAAAGGAAGCCTCCCATG
LVR01_0068_A06.b : GCAACCTCCCCACGGTGAAGAAGTTTCTGC*AGCCTGGCAGCCAGAGGAAGCCTCCCATG
OVRM1_0130_H10.b : GCAACCTCCCCACGGTGAAGAAGTTTCTGC*AGCCTGGCAGCCAGAGGAAGCCTCCCATG


20110601C-008692 : GATGAGAAAAAATTAGAAGAAGCCAAGAATATTTTCCGGATTAAATAAAGCCGGCTGAGT
                   ---------+---------+---------+---------+---------+---------+ 753
LVR01_0074_H06.b : GATGAGAAAAAATTAGAAGAAGCCAAGAATATTTTCCGGATTAAATAAAGCCGGCTGAGT
LVRM1_0013_B11.b : GATGCGAGCAAATTAGAAGAAGCCAGAAATATTTgcgggataaataaagcgagctgagtg
LVR01_0068_A06.b : GATGAGAAAAAATTAGAAGAAGCCAAGAATATTTTCCGGATTAAATAAAGCCGGCTGAGT
OVRM1_0130_H10.b : GAGTGCGANAAATTAGAAGAAAGCCAGCATATTTTCCTGATTGAATAAAGCCGGCTGAGT


20110601C-008692 : GTCCCAGGACACCCAGGACCAATCTTCTGAAAGTTGCTATCAATCAACTGCTTGACCTAA
                   ---------+---------+---------+---------+---------+---------+ 813
LVR01_0074_H06.b : GTCCCAGGACACCCCAGACCAATCTTCTGAAAGTTGCTATCAATCAACTGCTTGACCTAA
LVRM1_0013_B11.b : tcgcacgagacccggaacaatc                                     
LVR01_0068_A06.b : GTCCCAGGACACCCAGGACCAATCTTCTGAAAGTTGCTATCAATCAACTGCTTGACCTAA
OVRM1_0130_H10.b : G                                                          


20110601C-008692 : ATGTAGATCCCAGTTATCGTCAGTCTAATAAATGTTTCCACAGTGTAAGTGTTCATTTCA
                   ---------+---------+---------+---------+---------+---------+ 873
LVR01_0074_H06.b : ATGTAGATCCCCAGTATCGTCAGTCTAATAAATGTTTTCACAGTGTAAGTGTTCATTTCA
LVRM1_0013_B11.b :                                                             
LVR01_0068_A06.b : ATGTAGATCCCAGTTATCGTCAGTCTAATAAATGTTTCCACAGTGTAAGTGTTCATTTCA
OVRM1_0130_H10.b :                                                             


20110601C-008692 : TTAGAATTCAGATTTAGATGCAAAACAATCAATTTTGTTTTTGTTCGCACGCAATATCCT
                   ---------+---------+---------+---------+---------+---------+ 933
LVR01_0074_H06.b : TTAGAATTC*GATTTAGATGCAAAACAATCAATTTTGTTTTTGTTCGCACGCAATATCCT
LVRM1_0013_B11.b :                                                             
LVR01_0068_A06.b : TTAGAATTCAGATTTAGATGCAAAACAATCAATTTTgttnntgtcgcacgcaatatcatg
OVRM1_0130_H10.b :                                                             


20110601C-008692 : GATCTTCTCCCGGAATGTACCTGAAACTTAAACCTAATTAAAACGAAGGCAAAACCAAAA
                   ---------+---------+---------+---------+---------+---------+ 993
LVR01_0074_H06.b : GATCTTCTCCCGGAATGTACCTGAAACTTAAACCTAATTAAAACGAAGGCAAAACCAAAA
LVRM1_0013_B11.b :                                                             
LVR01_0068_A06.b : atcttctcccggaatgtacctgagacttaaacataattaaacgaggcaaaaccaaaaaaa
OVRM1_0130_H10.b :                                                             


20110601C-008692 : AAAAAAAAAAAAA...............................................
                   ---------+---------+---------+---------+---------+---------+ 1006
LVR01_0074_H06.b : AAAAAAAAAAAAAaaggccacttggcccccaacctccgggtcccggcccc         
LVRM1_0013_B11.b :                                                             
LVR01_0068_A06.b : aaaaaaaaaaagccacatgtgcttccagctgccag                        
OVRM1_0130_H10.b :