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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-008962

Length: 771

Sequence:  [FASTA format sequence]
GGGGTATGGC GCGCTGTGCG GCGCAGGGCG GCTGGCACAA ACGGCGGCGC CGGGGCCGGA
GGAAAAAGCT GGCCATCGTG ACAGTTCTCT TCCCAAGCCC CTAGGGACAT CAGAGGATTT
GGGGACCAGC GAGCACCCCC AGGGCACGAG AAAAGTTTCT GTCACCTGCC CTGCCTCATC
CTGCCCCACG CCAGGCCCAG CTGCCCTGGC CCCCGGCTGC ATCAAGTGGA GGAGGAGGAG
GTGGAGGAGG GTGGCACCAT GGGCCTGGGC CGTGCCCTCC ATGCCCGGGG GATGAAGACA
CTGCTGCCAT GGACAGCCCG TGCCAGCCGC AGCCCCTGAG TCAGGCTCTC CCTCAGTTGC
CTGGTTCCGT GTCAGAACCG TTGGAGCCTA ACCGGGCCAG GATGGGGGTG GAGAGTTACC
TGCCCTGTCC CCTGCTGTCC TCCTACCACT GTCCAGGAGC GCCTGGTGAG GCCTCGGCGG
GAAGTGGGAC CCCCAGAGCC ACAGCTACTT CCACCACAGC CAGCCCCCTG CGGGAGGGCT
TCGGTGGGCA GGATGGCGGC GAGCTGCGGC CGCTGCAAAG TGAGGGTGCT GCGGCACTGG
TCACCAAGGG GTGCCAGCGG CTGGCAGCCC CAGGCGCCCG GCCTGAAGCC CCCCAACGGA
AATGGGCAAA GGGTGGTGGG GATGCCCCCG CACCCAGCAA ACGGCCCTGG GGCAGGCAGG
AAAACCACGA AGCTGAAGGC GAGGGGGAGG GCTGCANCAT TGGCANTGGT G

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		EGLN2	egl nine homolog 2 [Homo sapiens].	163	1e-40	O
		EGLN2	egl nine homolog 2 [Homo sapiens].	163	1e-40	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Egln2	egl nine homolog 2 [Mus musculus].	150	1e-36	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC484495	PREDICTED: similar to EGL nine (C.elegans) homolog 2 isoform 1 isoform 2 [Canis familiaris].	164	6e-41	O
		LOC484495	PREDICTED: similar to EGL nine (C.elegans) homolog 2 isoform 1 isoform 1 [Canis familiaris].	164	6e-41	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		EGLN2	PREDICTED: egl nine homolog 2 [Sus scrofa].	179	1e-45	O

Alignment:      TOP

20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
PTG01_0094_D05.b : nnncgcgattnnnnnnggagtaagcagcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0126_D09.b :                       ttgtcaaaacagcggtaxxxxxxxxxxxxxxxxxxxxx
ADR01_0028_H12.b :                        nggcaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-008962 : .........GGGGTATGGCGCGCTGTGCGGCGCAGGGCGGCTGGCACAAACGGCGGCGCC
                   ---------+---------+---------+---------+---------+---------+ 51
PTG01_0094_D05.b : xxxxxxxxxGGGGTATGGCGCGCTGTGCGGCGCAGGGCGGCTGGCACAAACGGCGGCGCC
THY01_0126_D09.b : xxxxxxxxxxxxxxxTGGCGCGCTGTGCGGCGCAGGGCGGCTGGCACAAACGGCGGCGCC
ADR01_0028_H12.b : xxxxxxxxxxxxxxxTGGCGCGCTGTGCGGCGCAGGGCGGCTGGCACAAACGGCGGCGCC


20110601C-008962 : GGGGCCGGAGGAAAAAGCTGGCCATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATC
                   ---------+---------+---------+---------+---------+---------+ 111
PTG01_0094_D05.b : GGGGCCGGAGGAAAAAGCTGGCCATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATC
THY01_0126_D09.b : GGGGCCGGAGGAAAAAGCTGGCCATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATC
ADR01_0028_H12.b : GGGGCCGGAGGAAAAAGCTGGCCATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATC


20110601C-008962 : AGAGGATTTGGGGACCAGCGAGCACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCC
                   ---------+---------+---------+---------+---------+---------+ 171
PTG01_0094_D05.b : AGAGGATTTGGGGACCAGCGAGCACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCC
THY01_0126_D09.b : AGAGGATTTGGGGACCAGCGAGCACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCC
ADR01_0028_H12.b : AGAGGATTTGGGGACCAGCGAGCACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCC


20110601C-008962 : TGCCTCATCCTGCCCCACGCCAGGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAG
                   ---------+---------+---------+---------+---------+---------+ 231
PTG01_0094_D05.b : TGCCTCATCCTGCCCCACGCCAGGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAG
THY01_0126_D09.b : TGCCTCATCCTGCCCCACGCCAGGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAG
ADR01_0028_H12.b : TGCCTCATCCTGCCCCACGCCAGGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAG


20110601C-008962 : GAGGAGGAGGTGGAGGAGGGTGGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGG
                   ---------+---------+---------+---------+---------+---------+ 291
PTG01_0094_D05.b : GAGGAGGAGGTGGAGGAGGGTGGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGG
THY01_0126_D09.b : GAGGAGGAGGTGGAGGAGGGTGGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGG
ADR01_0028_H12.b : GAGGAGGAGGTGGAGGAGGGTGGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGG


20110601C-008962 : ATGAAGACACTGCTGCCATGGACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCC
                   ---------+---------+---------+---------+---------+---------+ 351
PTG01_0094_D05.b : ATGAAGACACTGCTGCCATGGACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCC
THY01_0126_D09.b : ATGAAGACACTGCTGCCATGGACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCC
ADR01_0028_H12.b : ATGAAGACACTGCTGCCATGGACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCC


20110601C-008962 : CTCAGTTGCCTGGTTCCGTGTCAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGG
                   ---------+---------+---------+---------+---------+---------+ 411
PTG01_0094_D05.b : CTCAGTTGCCTGGTTCCGTGTCAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGG
THY01_0126_D09.b : CTCAGTTGCCTGGTTCCGTGTCAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGG
ADR01_0028_H12.b : CTCAGTTGCCTGGTTCCGTGTCAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGG


20110601C-008962 : AGAGTTACCTGCCCTGTCCCCTGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGG
                   ---------+---------+---------+---------+---------+---------+ 471
PTG01_0094_D05.b : AGAGTTACCTGCCCTGTCCCCTGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGG
THY01_0126_D09.b : AGAGTTACCTGCCCTGTCCCCTGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGG
ADR01_0028_H12.b : AGAGTTACCTGCCCTGTCCCCTGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGG


20110601C-008962 : CCTCGGCGGGAAGTGGGACCCCCAGAGCCACAGCTACTTCCACCACAGCCAGCCCCCTGC
                   ---------+---------+---------+---------+---------+---------+ 531
PTG01_0094_D05.b : CCTCGGCGGGAAGTGGGACCCCCAGAGCCACAGCTACTTCCACCACAGCCAGCCCCCTGC
THY01_0126_D09.b : CCTCGGCGGGAAGTGGGACCCCCAGAGCCACAGCTACTTCCACCACAGCCACCCCCCTGC
ADR01_0028_H12.b : CCTCGGCGGGAAGTGGGACCCCCAGAGCCACAGCTACTTCCACCACAGCCAGCCCCCTGC


20110601C-008962 : GGGAGGGCTTCGGTGGGCAGGATGGCGGCGAGCTGCGGCCGCTGCAAAGTGAGGGTGCTG
                   ---------+---------+---------+---------+---------+---------+ 591
PTG01_0094_D05.b : GGGAGGGCTTCGGTGGGCAGGATGGCGGCGAGCTGCGGCCGCTGCAAAGTGAGGGTGCTG
THY01_0126_D09.b : GGGAAGGCTTCGGTGGGCAGGATGGGGGGCAGCTGCGGCCCCTGCAaattaggttgctgc
ADR01_0028_H12.b : GGGAGGGCTTCGGTGGGCAGGATGGCGGCGAGCTGCGGCCGCTGCAAAGTGANGGTGCTG


20110601C-008962 : CGGCACTGGTCACCAAGGGGTGCCAGCGGCTGGCAGCCCCAGGCGCCCGGCCTGAAGCCC
                   ---------+---------+---------+---------+---------+---------+ 651
PTG01_0094_D05.b : CGGCACTGGTCACCAAGGGGTGCCAGCGGCTGGCAGCCCCAGGCGCCCGGCCTGAAGCCC
THY01_0126_D09.b : ggccttgttcaccagggtgcggccgttggcg                            
ADR01_0028_H12.b : CGGCACTGGTCACCAAGGGGTGCCAGCGGCTGGCAGCCCNAGGCGCCCGGCCTGANGCCC


20110601C-008962 : CCCAACGGAAATGGGCAAAGGGTGGTGGGGATGCCCCCGCACCCAGCAAACGGCCCTGGG
                   ---------+---------+---------+---------+---------+---------+ 711
PTG01_0094_D05.b : CCAAACGGAAATGGGCAAAGGGTGGTGGGGATGCCCCCGCACCCAGCAAAaggccctggg
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : CCCAACGGAAATGGGCAAANGGTGGTGGGGATGCCCCCGCACCCAGCAAACGGCCCTGGG


20110601C-008962 : GCAGGCAGGAAAACCACGAAGCTGAAGGCGAGGGGGAGGGCTGCANCATTGGCANTGGTG
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : gccaggcagaaaccaggaagctaaggcccaggggaaaggctgcaccattggcaagggtga
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : GCAGGCAGGAAAACCACGAAGCTGAAGGCGAGGGGGAGGGCTGCANCATTGGCANTGGTG


20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : acccaatccggggctaaagaaaaaagtgcttccccttgccccggaacccctggcccggaa
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : gagccaatgcctgggctgaaggaagaagtgctgcccccttgcaccgaacgcccgggccct


20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : aaattttggccctgatggggaacattggatccgggccaaggaaagtttcccgggggggga
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : ggaataaattggggcccgcaaggcggaacaatggcatctgccttcaaggaaagttttcct


20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : caaaagggcctgtggcttcccaaagggaaacccccaaaagggggggggcccctggtaagg
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : ggggggcgcacctaagggggccttgggcttgcccaaatgggaaggcccttaaaacggggg


20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : gggaaattaggaaccaaggggtttcccccccaccaaatccggtggaaaaaatttgcggtg
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : gggcgccctgcctgaaaggcaaacttatgggcccacagggggttatccccccccccaacc


20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : ggaaaagaaataacccccgggccaaaaatatgggtctttttggccccgggggtttttttc
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : atcctggggggaacaaaattgtccgggtgggaaaggcattaaccccggtgccccaaaaat


20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : cccccctgtgggggggggggggggatttttttaagggggccccaaggggggggggtgttt
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : tgttggctcctttagggcccccgggggagggtggtaaaccccccacgggggctggggggg


20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : cccccaacagggggggggagaaaaaatattaaccccccgggggggggggccccccccttt
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : cgggggggaatcacttttttttaaggggggcgacccaagggccgtggggggggtgtttaa


20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : ttttttcaaaaaaaaaggggccgggggggggggcccttaaaaataacaaagggggggggg
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : ccccacacaaggggtgggggggaaatgtgaaacaattttaaaaatccccctccggcagaa


20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : gagaaaaaaaccactttttgggggtttttttttggtggggggcccccggaggaaaccccc
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : ggggccgcgctcccccctcgtttctattatttctgaatcaacatagtgggcacacccggg


20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : ccccccctctcccttggtgtttttccaaagaaaacaccaaaatttcttgcgggggggggt
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b : gtgtgagggggcgcctcgtctcaaaaaaatcctccagagggcgcgctgtg         


20110601C-008962 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 771
PTG01_0094_D05.b : ttccttcctcctc                                              
THY01_0126_D09.b :                                                             
ADR01_0028_H12.b :