Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-009009

Sequence: [FASTA format sequence] GTCACACCAC CCGGAGGCGG GGTCGCCAGC AGAGTTAAAC TGGGCGGCGG CCCGGCAGCC TGGGGTCCCC ACCGAGCCCA TGGAGAGAGG CCGCGCGTAC ACCCGCCTGA ACACCTTGCT GCAACACCTT GGCGGCAGCT CCGCTGGGGC CGTCACAGCT CATCCCACTT CAGGGGCTGC CAAGTTCCAA CCTCAACAAT TCCAGTATAC TCGGGATAAT AATGTTCTAA GCCTAGAACA GAGACAATTT TATGAAGAAA ATGGGTTTCT TGTCATTAAA AATTTGGTAT CTGATGCTGA TATTGAACGC TTTAGGGTTC AGTTTGAAAG AATCTGCAGA GAGGAGGTGA AACCACTGGG ATTGATGCTG ATGAGAGATG TGTCCATTGG CAAATCTGAA TATGTTCCAT GTGAGAAAAT GGTCTCCAAG GTCCAAAATT TCCAAGAAGA TAAGGAGCTC TTCAGATACT GCACCCTTCC TGAGGTTCAA GAACGTCTCA TGTTTTCTTT CTCTTTAACA GCCCACCTGC ACCCCTGCCT CTGCAATCTT CTAATTTTAT TTTTTACTTT ATCTAGCCCC TTTCTCCTGG GGCCCTAGAG CTGTGGTGGA TACTTGGCAC TGTCTGGAGA TATGTCTGGT TGTCATGCAG GAGGATATGT GCTGCTGGCT TCTAATGGGT AGAGGTCAGG GATGCATTCC TGAGGCCCAG GGATGCGCTA AGGCACAGAG TCACCCCTTC CCCCAAACAA AGAATTATCC ATCCCAAAAT ATCAGTCGTG CCAAGAGTGA GAAATCCTGC TCATAATTTT GCAAATTATT TTTGGTTAAG AAGAGCAGGA ATTCTGTGGC GTTTCCACTG TGACGCAGCA GAAGCGAATC TGACTAGTAG CCATGAGGAT TGGGGTTCAA TCNNCTGGCT CACTCGGTGG GTTGGGGACC TGGCCTTGGC TGTGAGCTGT GGTGCANGTC ACAGAAGAGC CCGAGTCCNA CGNTGCTGTG GCTGTGGTGT GGGCTGGTGC CTGCGGCTTC AATTTGACCC CCTAGCTGGG AACTTCCATA TGCAAGGGGT GAGGTCCTTT AAAAAAAAAA AAA

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
PHYH phytanoyl-CoA dioxygenase, peroxisomal isoform a precursor [Homo sapiens]. 207 2e-53 O

PHYH phytanoyl-CoA dioxygenase, peroxisomal isoform b precursor [Homo sapiens]. 71.2 2e-12 O

		Locus	Definition	Score	E value	FL
		PHYH	phytanoyl-CoA dioxygenase, peroxisomal isoform a precursor [Homo sapiens].	207	2e-53	O
		PHYH	phytanoyl-CoA dioxygenase, peroxisomal isoform b precursor [Homo sapiens].	71.2	2e-12	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Phyh phytanoyl-CoA dioxygenase, peroxisomal precursor [Mus musculus]. 189 4e-48 O

		Locus	Definition	Score	E value	FL
		Phyh	phytanoyl-CoA dioxygenase, peroxisomal precursor [Mus musculus].	189	4e-48	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC478001 PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis familiaris]. 196 4e-50

LOC478000 PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis familiaris]. 187 2e-47

LOC607509 PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis familiaris]. 95.5 8e-20 O

Locus	Definition	Score	E value	FL
LOC478001	PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis familiaris].	196	4e-50
LOC478000	PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis familiaris].	187	2e-47
LOC607509	PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis familiaris].	95.5	8e-20	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
PHYH phytanoyl-CoA dioxygenase, peroxisomal precursor [Bos taurus]. 207 1e-53 O

		Locus	Definition	Score	E value	FL
		PHYH	phytanoyl-CoA dioxygenase, peroxisomal precursor [Bos taurus].	207	1e-53	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
PHYH phytanoyl-CoA dioxygenase, peroxisomal [Sus scrofa]. 83.6 2e-16 O

		Locus	Definition	Score	E value	FL
		PHYH	phytanoyl-CoA dioxygenase, peroxisomal [Sus scrofa].	83.6	2e-16	O

Assembly Members: 7 TOP

Library Plate Loc. Read Name Accession Full Seq.

ADR01 0100 A07 ADR01_0100_A07.b DB790348
LVR01 0105 G07 LVR01_0105_G07.b BP446829 AK346020
OVR01 0055 F08 OVR01_0055_F08.b BW964540
OVRM1 0012 B10 OVRM1_0012_B10.b BP147088 AK234736
OVRM1 0025 A10 OVRM1_0025_A10.b BP145811
SKNB1 0017 F07 SKNB1_0017_F07.b DB800951
SMG01 0033 C02 SMG01_0033_C02.b FS716156 AK397500

SNPs: 5 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
94 C 3 1 0.667 W S CGC/R
G 2 0 0.333 CGG/R
109 C 3 0 0.429 W S CTC/L
G 2 2 0.571 CTG/L
454 A 2 0 0.286 W S AAA/K
G 3 2 0.714 AAG/K
457 A 2 0 0.286 W S GAA/E
G 3 2 0.714 GAG/E
595 C 3 2 0.714 W -
T 2 0 0.286

Alignment: TOP

20110601C-009009 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SMG01_0033_C02.b : nggcatcttannngggtcaacagcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SKNB1_0017_F07.b :                                      nnnggttnnnnnnnncctacgtt
OVRM1_0012_B10.b :                            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0100_A07.b :                                  aaaaanggactaacaxxxxxxxxxxxx
OVRM1_0025_A10.b :                                      cxxxxxxxxxxxxxxxxxxxxxx
OVR01_0055_F08.b :                      nnggcttggactaagacxxxxxxxxxxxxxxxxxxxxxx
LVR01_0105_G07.b :                                            catttatgtgxxxxxxx


20110601C-009009 : ....GTCACACCACCCGGAGGCGGGGTCGCCAGCAGAGTTAAACTGGGCGGCGGCCCGGC
                   ---------+---------+---------+---------+---------+---------+ 56
SMG01_0033_C02.b : xxxxGTCACACCACCCGGAGGCGGGGTCGCCAGCAGAGTTAAACTGGGCGGCGGCCCGGC
SKNB1_0017_F07.b : ggcacggaacccaCCCGGAGGCGGGGTCGCC*GCAGAGTTAAACTGGGCGGCGGCCCGGC
OVRM1_0012_B10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxggaGCAGAGTTAAACTGGGCGGCGGCCCGGC
ADR01_0100_A07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGAGTTAAACTGGGCGGCGGCCCGGC
OVRM1_0025_A10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGGGCGGCGGCCCGGC
OVR01_0055_F08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGGGCGGCGGCCCGGC
LVR01_0105_G07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-009009 : AGCCTGGGGTCCCCACCGAGCCCATGGAGAGAGGCCGCGCGTACACCCGCCTGAACACCT
                   ---------+---------+---------+---------+---------+---------+ 116
SMG01_0033_C02.b : AGCCTGGGGTCCCCACCGAGCCCATGGAGAGAGGCCGCGCGTACACCCGCCTCAACACCT
SKNB1_0017_F07.b : AGCCTGGGGTCCCCACCGAGCCCATGGAGAGAGGCCGCGCGTACACCCGCCTCAACACCT
OVRM1_0012_B10.b : AGCCTGGGGTCCCCACCGAGCCCATGGAGAGAGGCCGCGCGTACACCCGCCTGAACACCT
ADR01_0100_A07.b : AGCCTGGGGTCCCCACCGAGGCCATGGAGAGAGGCCGGGCGTACACCCGCCTGAACACCT
OVRM1_0025_A10.b : AGCCTGGGGTCCCCACCGAGCCCATGGAGAGAGGCCGCGCGTACACCCGCCTGAACACCT
OVR01_0055_F08.b : AGCCTGGGGTCCCCACCGAGCCCATGGAGAGAGGCCGCGCGTACACCCGCCTCAACACCT
LVR01_0105_G07.b : xxxxxtGGGTCCCCACCGAGGCCATGGAGAGAGGCCGGGCGTACACCCGCCTGAACACCT


20110601C-009009 : TGCTGCAACACCTTGGCGGCAGCTCCGCTGGGGCCGTCACAGCTCATCCCACTTCAGGGG
                   ---------+---------+---------+---------+---------+---------+ 176
SMG01_0033_C02.b : TGCTGCAACACCTTGGCGGCAGCTCCGCTGGGGCCGTCACAGCTCATCCCACTTCAGGGG
SKNB1_0017_F07.b : TGCTGCAACACCTTGGCGGCAGCTCCGCTGGGGCCGTCACAGCTCATCCCACTTCAGGGG
OVRM1_0012_B10.b : TGCTGCAACACCTTGGCGGCAGCTCCGCTGGGGCCGTCACAGCTCATCCCACTTCAGGGG
ADR01_0100_A07.b : TGCTGCAACACCTTGGCGGCAGCTCCGCTGGGGCCGTCACAGCTCATCCCACTTCAGGGG
OVRM1_0025_A10.b : TGCTGCAACACCTTGGCGGCAGCTCCGCTGGGGCCGTCACAGCTCATCCCACTTCAGGGG
OVR01_0055_F08.b : TGCTGCAACACCTTGGCGGCAGCTCCGCTGGGGCCGTCACAGCTCATCCCACTTCAGGGG
LVR01_0105_G07.b : TGCTGCAACACCTTGGCGGCAGCTCCGCTGGGGCCGTCACAGCTCATCCCACTTCAGGGG


20110601C-009009 : CTGCCAAGTTCCAACCTCAACAATTCCAGTATACTCGGGATAATAATGTTCTAAGCCTAG
                   ---------+---------+---------+---------+---------+---------+ 236
SMG01_0033_C02.b : CTGCCAAGTTCCAACCTCAACAATTCCAGTATACTCGGGATAATAATGTTCTAAGCCTAG
SKNB1_0017_F07.b : CTGCCAAGTTCCAACCTCAACAATTCCAGTATACTCGGGATAATAATGTTCTAAGCCTAG
OVRM1_0012_B10.b : CTGCCAAGTTCCAACCTCAACAATTCCAGTATACTCGGGATAATAATGTTCTAAGCCTAG
ADR01_0100_A07.b : CTGCCAAGTTCCAACCTCAACAATTCCAGTATACTCGGGATAATAATGTTCTAAGCCTAG
OVRM1_0025_A10.b : CTGCCAAGTTCCAACCTCAACAATTCCAGTATACTCGGGATAATAATGTTCTAAGCCTAG
OVR01_0055_F08.b : CTGCCAAGTTCCAACCTCAACAATTCCAGTATACTCGGGATAATAATGTTCTAAGCCTAG
LVR01_0105_G07.b : CTGCCAAGTTCCAACCTCAACAATTCCAGTATACTCGGGATAATAATGTTCTAAGCCTAG


20110601C-009009 : AACAGAGACAATTTTATGAAGAAAATGGGTTTCTTGTCATTAAAAATTTGGTATCTGATG
                   ---------+---------+---------+---------+---------+---------+ 296
SMG01_0033_C02.b : AACAGAGACAATTTTATGAAGAAAATGGGTTTCTTGTCATTAAAAATTTGGTATCTGATG
SKNB1_0017_F07.b : AACAGAGACAATTTTATGAAGAAAATGGGTTTCTTGTCATTAAAAATTTGGTATCTGATG
OVRM1_0012_B10.b : AACAGAGACAATTTTATGAAGAAAATGGGTTTCTTGTCATTAAAAATTTGGTATCTGATG
ADR01_0100_A07.b : AACAGAGACAATTTTATGAAGAAAATGGGTTTCTTGTCATTAAAAATTTGGTATCTGATG
OVRM1_0025_A10.b : AACAGAGACAATTTTATGAAGAAAATGGGTTTCTTGTCATTAAAAATTTGGTATCTGATG
OVR01_0055_F08.b : AACAGAGACAATTTTATGAAGAAAATGGGTTTCTTGTCATTAAAAATTTGGTATCTGATG
LVR01_0105_G07.b : AACAGAGACAATTTTATGAAGAAAATGGGTTTCTTGTCATTAAAAATTTGGTATCTGATG


20110601C-009009 : CTGATATTGAACGCTTTAGGGTTCAGTTTGAAAGAATCTGCAGAGAGGAGGTGAAACCAC
                   ---------+---------+---------+---------+---------+---------+ 356
SMG01_0033_C02.b : CTGATATTGAACGCTTTAGGGTTCAGTTTGAAAGAATCTGCAGAGAGGAGGTGAAACCAC
SKNB1_0017_F07.b : CTGATATTGAACGCTTTAGGGTTCAGTTTGAAAGAATCTGCAGAGAGGAGGTGAAACCAC
OVRM1_0012_B10.b : CTGATATTGAACGCTTTAGGGTTCAGTTTGAAAGAATCTGCAGAGAGGAGGTGAAACCAC
ADR01_0100_A07.b : CTGATATTGAACGCTTTAGGGTTCAGTTTGAAAGAATCTGCAGAGAGGAGGTGAAACCAC
OVRM1_0025_A10.b : CTGATATTGAACGCTTTAGGGTTCAGTTTGAAAGAATCTGCAGAGAGGAGGTGAAACCAC
OVR01_0055_F08.b : CTGATATTGAACGCTTTAGGGTTCAGTTTGAAAGAATCTGCAGAGAGGAGGTGAAACCAC
LVR01_0105_G07.b : CTGATCTTGAACGCTTTAGGGTTCAGTTTGAAAGAATCTGCAGAGAGGAGGTGAAACCAC


20110601C-009009 : TGGGATTGATGCTGATGAGAGATGTGTCCATTGGCAAATCTGAATATGTTCCATGTGAGA
                   ---------+---------+---------+---------+---------+---------+ 416
SMG01_0033_C02.b : TGGGATTGATGCTGATGAGAGATGTGTCCATTGGCAAATCTGAATATGTTCCATGTGAGA
SKNB1_0017_F07.b : TGGGATTGATGCTGATGAGAGATGTGTCCATTGGCAAATCTGAATATGTTCCATGTGAGA
OVRM1_0012_B10.b : TGGGATTGATGCTGATGAGAGATGTGTCCATTGGCAAATCTGAATATGTTCCATGTGAGA
ADR01_0100_A07.b : TGGGATTGATGCTGATGAGAGATGTGTCCATTGGCAAATCTGAATATGTTCCATGTGAGA
OVRM1_0025_A10.b : TGGGATTGATGCTGATGAGAGATGTGTCCATTGGCAAATCTGAATATGTTCCATGTGAGA
OVR01_0055_F08.b : TGGGATTGATGCTGATGAGAGATGTGTCCATTGGCAAATCTGAATATGTTCCATGTGAGA
LVR01_0105_G07.b : TGGGATTGATGCTGATGAGAGATGTGTCCATTGGCAAATCTGAATATGTTCCATGTGAGA


20110601C-009009 : AAATGGTCTCCAAGGTCCAAAATTTCCAAGAAGATAAGGAGCTCTTCAGATACTGCACCC
                   ---------+---------+---------+---------+---------+---------+ 476
SMG01_0033_C02.b : AAATGGTCTCCAAGGTCCAAAATTTCCAAGAAGATAAGGAGCTCTTCAGATACTGCACCC
SKNB1_0017_F07.b : AAATGGTCTCCAAGGTCCAAAATTTCCAAGAAGATAAGGAGCTCTTCAGATACTGCACCC
OVRM1_0012_B10.b : AAATGGTCTCCAAGGACCAAAATTTCCAAGAAGATAAGGAGCTCTTCAGATACTGCACCC
ADR01_0100_A07.b : AAATGGTCTCCAAGGTCCAAAATTTCCAAGAAGATAAAGAACTCTTCAGATACTGCACCC
OVRM1_0025_A10.b : AAATGGTCTCCAAGGTCCAAAATTTCCAAGAAGATAAGGAGCTCTTCAGATACTGCACCC
OVR01_0055_F08.b : AAATGGTCTCCAAGGTCCAAAATTTCCAAGAAGATAAGGAGCTCTTCAGATGCTGCACCC
LVR01_0105_G07.b : AAATGGTCTCCAAGGTCCAAAATTTCCAAGAAGATAAAGAACTCTTCAGATACTGCACCC


20110601C-009009 : TTCCTGAGGTTCAAGAACGTCTCATGTTTTCTTTCTCTTTAACAGCCCACCTGCACCCCT
                   ---------+---------+---------+---------+---------+---------+ 536
SMG01_0033_C02.b : TTCCTGAGGTTCAAGAACGTCTCATGTTTTCTTTCTCTTTAACAGCCCACCTGCACCCCT
SKNB1_0017_F07.b : TTCCTGAGGTTCAAGAACGTCTCATGTTTTCTTTCTCTTTAACAGCCCACCTGCACCCCT
OVRM1_0012_B10.b : TTCCTGAGGTTCAAGAACGTCTCATGTTTTCTTTCTCTTTAACAGCCCACCTGCACCCCT
ADR01_0100_A07.b : TTCCTGAGGTTCAAGAACGTCTCATGTTTTCTTTCTCTTTAACAGCCCACCTGCACCCCT
OVRM1_0025_A10.b : TTCCTGAGGTTCAAGAACGTCTCATGTTTTCTTTCTCTTTAACAGCCCACCTGCACCCCT
OVR01_0055_F08.b : TTCCTGAGGTTCAAGAACGTCTCATGTTTTCTTTCTCTTTAACAGCCCACCTGCACCCCT
LVR01_0105_G07.b : TTCCTGAGGTTCAAGAACGTCTCATGTTTTCTTTCTCTTTAACAGCCCACCTGCACCCCT


20110601C-009009 : GCCTCTGCAATCTTCTAATTTTATTTTTTACTTTATCTAGCCCCTTTCTCCTGGGGCCCT
                   ---------+---------+---------+---------+---------+---------+ 596
SMG01_0033_C02.b : GCCTCTGCAATCTTCTAATTTTATTTTTTACTTTATCTAGCCCCTTTCTCCTGNGGCCCT
SKNB1_0017_F07.b : GCCTCTGCAATCTTCTAATTTTATTTTTTACTTTATCTAGCCCCTTTCTCCTGGGGCCCT
OVRM1_0012_B10.b : GCCTCTGCAATCTTCTAATTTTATTTTTTACTTTATCTAGCCCCTTTCTCCTGNGGCCCT
ADR01_0100_A07.b : GCCTCTGCAATCTTCTAATTTTATTTTTTACTTTATCTAGCCCCTTTCTCCTGGGGCCTT
OVRM1_0025_A10.b : GCCTCTGCAATCTTCTAATTTTATTTTTTACTTTATCTAGCCCCTTTCTCCTGGGGCCCT
OVR01_0055_F08.b : GCCTCTGCAATCTTCTAATTTTATTTTTTACTTTATCTAGCCCCTTTCTCCTGGGGCCCT
LVR01_0105_G07.b : GCCTCTGCAATCTTCTAATTTTATTTTTTACTTTATCTAGCCCCTTTCTCCTGGGGCCTT


20110601C-009009 : AGAGCTGTGGTGGATACTTGGCACTGTCTGGAGATATGTCTGGTTGTCATGCAGGAGGAT
                   ---------+---------+---------+---------+---------+---------+ 656
SMG01_0033_C02.b : AGAGCTGTGGTGGATACTTGGCACTGTCTGGAGATATGTCTGGTTGTCATGCAGGAGGAT
SKNB1_0017_F07.b : AGAGCTGTGGTggatacttggcactgtctggagatatgtctggttgtcatgcaggaggat
OVRM1_0012_B10.b : AGAGCTGTGGTGGATACTTGGCACTGTCTGGAGATATGTCTGGTTGTCATGCANGAGGAT
ADR01_0100_A07.b : AGAGCTGTGGTggatacttggcactgtctggagatatgtctggttgtcatgcaggaggat
OVRM1_0025_A10.b : AGAGCTGTGGTGGATACTTGGCACTGTCTGGAGATATGTCTGGTTGTCATGCAGGAGGAT
OVR01_0055_F08.b : AGAGCTGTGGTggatacttggcactgtctggagatatgtctggttgtcatgcaagaagat
LVR01_0105_G07.b : AGAGCTGTGGTggatacttggcactgtctggagatatgtctggttgtcatgcaggaggat


20110601C-009009 : ATGTGCTGCTGGCTTCTAATGGGTAGAGGTCAGGGATGCATTCCTGAGGCCCAGGGATGC
                   ---------+---------+---------+---------+---------+---------+ 716
SMG01_0033_C02.b : ATGTGCTGCTGGCTTCTAATGGGTAGAGGTCAGGGATGCATTCCTGAGGCCCAGGGATGC
SKNB1_0017_F07.b : atgtgctgctggcttctaatgggtagaggtcagggatgcattcctgaggcccagggatgc
OVRM1_0012_B10.b : ATGTGCTGCTGGCTTCTAATGGGTAGAGGTCAGGGATGCATTTCTGAGGCCCAGGGATGN
ADR01_0100_A07.b : atgtgctgctggcttctaatgggtagaggtcagggatgcattcctgaggcccagggatgc
OVRM1_0025_A10.b : ATGTGCTGCTGGCTTCTAATGGGTAGAGGTCAGGGATGCATTCCTGAGGCCCAGGGATGC
OVR01_0055_F08.b : atgtgctgctggcttctaatgggtagaggtcagggatgcattcctgaggcccagggatgc
LVR01_0105_G07.b : atgtgctgctggcttctaatgggtagaggtcagggatgcattcctgaggcccagggatgc


20110601C-009009 : GCTAAGGCACAGAGTCACCCCTTCCCCCAAACAAAGAATTATCCATCCCAAAATATCAGT
                   ---------+---------+---------+---------+---------+---------+ 776
SMG01_0033_C02.b : GCTAAGGCACAGAGCCACCCTTTCCCC*CAACAAAGAATTA*CCATCCCAAA*TATCAGT
SKNB1_0017_F07.b : gctaaggcacagagtcacccctccccc*aaacaaagaattatccatcccaaaatatcagt
OVRM1_0012_B10.b : CGCTAGGCACAGAGTCACCCCTTCCCC*AAACAAAGAAT*ATCCATCCCAAA*TATCAGT
ADR01_0100_A07.b : gctaaggcacagagtcaccccttcccccaaacaaagaattatccatcccaaaatatcagt
OVRM1_0025_A10.b : GCTAAGGCACAGAGTCANCCCTTCCCCCCAACAA*GAAATATCCAT*CCAAAATATCAGT
OVR01_0055_F08.b : gctaaggcacagagccaccccttcccccaa*caaagaattatccatcccaaaatatcagt
LVR01_0105_G07.b : gctaaggcacagagtcaccccttcccccaaacaaagaattatccatcccaaaatatcagt


20110601C-009009 : CGTGCCAAGAGTGAGAAATCCTGCTCATAATTTTGCAAATTATTTTTGGTTAAGAAGAGC
                   ---------+---------+---------+---------+---------+---------+ 836
SMG01_0033_C02.b : CGTGCCA*GAATGAGAAATCCTGCTCATAATTTgcaaatatttttgggttaaaagaacaa
SKNB1_0017_F07.b : cgtgtcaagattgagaaatcctgCTCATAATTTTGCAAATTATTTTTGGTTAAGAAGAGC
OVRM1_0012_B10.b : CGTGCCAgattgagaatcctgctcatattttngcaatattttggntagaag        
ADR01_0100_A07.b : cgtgccaagagtgagaaatcctgCTCATAATTTTGCAAATTATTTTTGGTTAAGAAGAGC
OVRM1_0025_A10.b : CGTGCCAAGATTGAAAAAATCTGCTCATATTTTgcaattatttttggttaagaagacagg
OVR01_0055_F08.b : cctgcccagattgaaaaatcctgCTCATAATTTTTCAAATTATTTTTGGTTAAaaaaaac
LVR01_0105_G07.b : cgtgccaagagtgagaaatcctgCTCATAATTTTGCAAATTATTTTTGGTTAAGAAGAGC


20110601C-009009 : AGGAATTCTGTGGCGTTTCCACTGTGACGCAGCAGAAGCGAATCTGACTAGTAGCCATGA
                   ---------+---------+---------+---------+---------+---------+ 896
SMG01_0033_C02.b : gaatctgtggcgtttccctgtgacgcagcagaatgaatctgactagtagccatgaggatg
SKNB1_0017_F07.b : ANGAATTCTGTggcgtttccactgtgacgcancggaagtgaatctgactggtagccatgg
OVRM1_0012_B10.b :                                                             
ADR01_0100_A07.b : ANGAATTCTGTggcgtttccactgtgacgcagcagaaacgaatctgactagtagccatga
OVRM1_0025_A10.b : at                                                         
OVR01_0055_F08.b : caggaattctgtgggcgtttccactggtgaccccaccaaaaaagaatccttaacagttaa
LVR01_0105_G07.b : AGGAATTCTGTggcgtttccactgtgacgcagcaaaaacaaatcctaatggtagccatga


20110601C-009009 : GGATTGGGGTTCAATCNNCTGGCTCACTCGGTGGGTTGGGGACCTGGCCTTGGCTGTGAG
                   ---------+---------+---------+---------+---------+---------+ 956
SMG01_0033_C02.b : ggggttcatccctggcctcatcagtgggtcaagaacccgccctgcctgtgaactgtgggg
SKNB1_0017_F07.b : ggattggggggttcggtctctggcctcctccantgggtcggggaactggccttggctgtg
OVRM1_0012_B10.b :                                                             
ADR01_0100_A07.b : ggattggggttcaatcnnctggctcactcggtgggttggggacctggccttggctgtgag
OVRM1_0025_A10.b :                                                             
OVR01_0055_F08.b : ccctgaaggaattgggggttccaatctccggggcccccactccagggggggcaggggaac
LVR01_0105_G07.b : agaatggggttcgatccctggccctcctcattggggttggggaacctggccttggctgtg


20110601C-009009 : CTGTGGTGCANGTCACAGAAGAGCCCGAGTCCNACGNTGCTGTGGCTGTGGTGTGGGCTG
                   ---------+---------+---------+---------+---------+---------+ 1016
SMG01_0033_C02.b : caggccaaaaaaaggcccaactccccctttcctggctttggggtaagcctgtgcctgcac
SKNB1_0017_F07.b : ggctgtggtgcaggtcacagagaagcccgagtcccgcgtgctgtggcctgtggtgtgggc
OVRM1_0012_B10.b :                                                             
ADR01_0100_A07.b : ctgtggtgcangtcacagaagagcccgagtccnacgntgctgtggctgtggtgtgggctg
OVRM1_0025_A10.b :                                                             
OVR01_0055_F08.b : ctgggccctttggccttgtaaaccttgtgggtggcagggtccaacaaaaaaagggccccc
LVR01_0105_G07.b : ggctgggggggaaggccaaaaaaaaaggccccaaatcacanggttgccttgggctggggc


20110601C-009009 : GTGCCTGCGGCTTCAATTTGACCCCCTAGCTGGGAACTTCCATATGCAAGGGGTGAGGTC
                   ---------+---------+---------+---------+---------+---------+ 1076
SMG01_0033_C02.b : cttaatttaaccctaacccggaattccatatcccgggggaggcctttaaaaaaaaaaaaa
SKNB1_0017_F07.b : tggtgctgccggcttcaatttacccccgggcctgggacttcctatggcccagggtggagg
OVRM1_0012_B10.b :                                                             
ADR01_0100_A07.b : gtgcctgcggcttcaatttgaccccctagctgggaacttccatatgcaaggggtgaggtc
OVRM1_0025_A10.b :                                                             
OVR01_0055_F08.b : aaaattccccaccctttctcttgttggcttgtgtgggggtaagagacctggggggaccct
LVR01_0105_G07.b : gcgggggcgggggccctggggccttccgttttgacccccaaaccccggggaaaatttccc


20110601C-009009 : CTTTAAAAAAAAAAAAA...........................................
                   ---------+---------+---------+---------+---------+---------+ 1093
SMG01_0033_C02.b : aaaaaaggcacttggctcaactgagtccggccccctaaaaatccccagggggccaagtat
SKNB1_0017_F07.b : tccttgaaaaaaagaaaaaaaaaaaaaaaaaaggccacctttgctcca           
OVRM1_0012_B10.b :                                                             
ADR01_0100_A07.b : ctttaaaaaaaaaaaaaaagnccaatttgctccaactgcaggtccggcccctctaaagta
OVRM1_0025_A10.b :                                                             
OVR01_0055_F08.b : tgcacacccttctccaattttgtaacaccccctacaccccgtggggaaaaatatttctcc
LVR01_0105_G07.b : atattgccacgggggggaaaggtcccttaaaaaaaaaaaaaaaaaaaaaaaaaaggccca


20110601C-009009 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1093
SMG01_0033_C02.b : acgaaccagttttttgaaaagggcccaaggggcctataaaagagggcggggccttttaaa
SKNB1_0017_F07.b :                                                             
OVRM1_0012_B10.b :                                                             
ADR01_0100_A07.b : tcctgaggggcccagactaacggaaccccttttttggaaaaggggcctcataggggtcta
OVRM1_0025_A10.b :                                                             
OVR01_0055_F08.b : atatttgcgcgcggggggggg                                      
LVR01_0105_G07.b : catttggtgccttcaaaacctgtcagggggcccccggggccccccccctccttaaaaaaa


20110601C-009009 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1093
SMG01_0033_C02.b : acccggggaaaacgctcttgggattttgaaaaccctttttgggtgaattttgaaacccca
SKNB1_0017_F07.b :                                                             
OVRM1_0012_B10.b :                                                             
ADR01_0100_A07.b : ttataactaagcctggccgggtttacaaaccggtacgggaaactcgctcttggaaatttt
OVRM1_0025_A10.b :                                                             
OVR01_0055_F08.b :                                                             
LVR01_0105_G07.b : aaaccccccctcctgaaggggggggggccccccccaaagcccctttttatacaccccccc


20110601C-009009 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1093
SMG01_0033_C02.b : gaaataaccccggaaaaaattttgggaagggtaccccccccgcgccgaatttccccaata
SKNB1_0017_F07.b :                                                             
OVRM1_0012_B10.b :                                                             
ADR01_0100_A07.b : gaaggaacttaatttggtggggctaatttggcaaacccccagaattagccccggaaaaaa
OVRM1_0025_A10.b :                                                             
OVR01_0055_F08.b :                                                             
LVR01_0105_G07.b : cgcaataac                                                  


20110601C-009009 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1093
SMG01_0033_C02.b : taaaaaaacacgctttttttgtt                                    
SKNB1_0017_F07.b :                                                             
OVRM1_0012_B10.b :                                                             
ADR01_0100_A07.b : aatttttgggttagggtaacaccccccccgtccctcagattttt               
OVRM1_0025_A10.b :                                                             
OVR01_0055_F08.b :                                                             
LVR01_0105_G07.b :