Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-009155

Sequence: [FASTA format sequence] GGGGGATTCG GAAGAGGCTG ATGATTTATA CAACCTCATT TTCTTTTTCC CCCTCCAGAA TGGGTTCTAG CTGGGTTCCC TGGGTGGTGG CTTTGTTAGT GACGGTAATC AGGCTGGACT CCTCCATGAC TCAAGGCAGA GATCCTCCAG AAGATTTTGT GATTCAGGCA AAGGCTGACT GTTACTTCAC CAATGGGACA CAAAGGGTGC AGTTTGTGGT CAGATTCATC TTTAACTTGG AGGAGTTCGT ACGTTTTGAC AGCGACCTGG GGAAGTTTGT GGCCTTGACA GAGTTGGGGC AGCCTGATGC TGAGCTGTGG AACAGTCGAC CAGATATCCT GGAGAGCAGC AGAGCATCTG TGGATGTGCT CTGCAGACGT AACTACTGGC TGGGTGCGCC CCTCACCGTG GAGAGAAAAG TGCAACCGGA GGTGACAGTG CATCCGGAGA GGACCCCGTC CCTGCAGCTC CGCAACCTGC TGCTTTGCTC TGTGACAGGG TTCTACCCAG GGGCCATCGA GATCAGGTGG TTCCGGAACG GGCAGGAGCA GAGAGAGGGG GTCCTGGCCA CTGGCCTCGT CAGGAATGGA GACTGGACCT TTCAGACAGT GGTGATGCTG GAAATGACTC CTGAGCTTGG GGACGTCTAC ACCTGCCTTG TTGATCATCC CAGCCTGCTG AGCCCCGTTT CTGTGGAGTG GAGAGCTCAG TCTGACTGTT CTTGGACAAA GCTGCTGATT GGAGTTGCAG CCTTCCTGGG GGGGCTAACC TTCCTCCTGG TGGGGATCAT CATCCACGTC AGGGCCCGCA AAGGATGTGT GGAGACTCAG CTGTCCGGTG ATGAGCCACA CTAAAGTCCT AGGCGAAGCG TCTCCCCCTG GAGCCTGAGT TGGAACTGAG TGGCCTGGGC CCTGNNACAA GTCCAGGACG TTCAGGAAGT CCATGTTCTG GAAGATTCCT TTC

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
HLA-DOB HLA class II histocompatibility antigen, DO beta chain precursor [Homo sapiens]. 413 e-115 O

LOC100293977 PREDICTED: HLA class II histocompatibility antigen, DQ beta 1 chain-like isoform 2 [Homo sapiens]. 294 7e-80 O

LOC100507714 PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 1 [Homo sapiens]. 292 3e-79 O

LOC100507709 PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens]. 292 3e-79 O

LOC100507714 PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens]. 292 3e-79 O

LOC100507709 PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 1 [Homo sapiens]. 292 3e-79 O

HLA-DQB1 HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]. 291 8e-79 O

HLA-DQB1 HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]. 291 5e-79 O

HLA-DQB1 HLA class II histocompatibility antigen, DQ beta 1 chain isoform 2 precursor [Homo sapiens]. 291 8e-79 O

HLA-DRB1 major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens]. 288 4e-78 O

Locus	Definition	Score	E value	FL
HLA-DOB	HLA class II histocompatibility antigen, DO beta chain precursor [Homo sapiens].	413	e-115	O
LOC100293977	PREDICTED: HLA class II histocompatibility antigen, DQ beta 1 chain-like isoform 2 [Homo sapiens].	294	7e-80	O
LOC100507714	PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 1 [Homo sapiens].	292	3e-79	O
LOC100507709	PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens].	292	3e-79	O
LOC100507714	PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens].	292	3e-79	O
LOC100507709	PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 1 [Homo sapiens].	292	3e-79	O
HLA-DQB1	HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens].	291	8e-79	O
HLA-DQB1	HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens].	291	5e-79	O
HLA-DQB1	HLA class II histocompatibility antigen, DQ beta 1 chain isoform 2 precursor [Homo sapiens].	291	8e-79	O
HLA-DRB1	major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens].	288	4e-78	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
H2-Ob histocompatibility 2, O region beta locus [Mus musculus]. 380 e-105 O

H2-Eb1 H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. 280 1e-75 O

H2-Ab1 histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. 272 2e-73 O

H2-Eb2 histocompatibility 2, class II antigen E beta2 [Mus musculus]. 253 2e-67 O

H2-DMb2 histocompatibility 2, class II, locus Mb2 [Mus musculus]. 80.1 2e-15 O

H2-DMb1 class II histocompatibility antigen, M beta 1 chain precursor [Mus musculus]. 77.8 1e-14 O

LOC100505003 PREDICTED: class II histocompatibility antigen, M beta 1 chain-like [Mus musculus]. 77.8 1e-14 O

H2-Ea-ps histocompatibility 2, class II antigen E alpha precursor [Mus musculus]. 75.1 8e-14 O

H2-Aa histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]. 72.4 5e-13 O

Mr1 major histocompatibility complex class I-related gene protein precursor [Mus musculus]. 67 2e-11

Locus	Definition	Score	E value	FL
H2-Ob	histocompatibility 2, O region beta locus [Mus musculus].	380	e-105	O
H2-Eb1	H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus].	280	1e-75	O
H2-Ab1	histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus].	272	2e-73	O
H2-Eb2	histocompatibility 2, class II antigen E beta2 [Mus musculus].	253	2e-67	O
H2-DMb2	histocompatibility 2, class II, locus Mb2 [Mus musculus].	80.1	2e-15	O
H2-DMb1	class II histocompatibility antigen, M beta 1 chain precursor [Mus musculus].	77.8	1e-14	O
LOC100505003	PREDICTED: class II histocompatibility antigen, M beta 1 chain-like [Mus musculus].	77.8	1e-14	O
H2-Ea-ps	histocompatibility 2, class II antigen E alpha precursor [Mus musculus].	75.1	8e-14	O
H2-Aa	histocompatibility 2, class II antigen A, alpha precursor [Mus musculus].	72.4	5e-13	O
Mr1	major histocompatibility complex class I-related gene protein precursor [Mus musculus].	67	2e-11

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
HLA-DOB major histocompatibility complex, class II, DO beta [Canis lupus familiaris]. 426 e-119 O

HLA-DRB1 DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. 302 3e-82 O

HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. 294 1e-79 O

LOC607827 PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris]. 70.9 2e-12 O

HLA-DQA1 major histocompatibility complex, class II, DQ alpha [Canis lupus familiaris]. 68.6 9e-12 O

DLA-DRA MHC class II DR alpha chain [Canis lupus familiaris]. 67.8 1e-11 O

LOC474869 PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris]. 67.4 2e-11 O

AZGP1 PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis familiaris]. 61.2 1e-09

DLA-79 MHC class Ib [Canis lupus familiaris]. 60.1 3e-09

LOC478284 PREDICTED: similar to beta-2-microglobulin precursor isoform 2 [Canis familiaris]. 59.7 4e-09 O

Locus	Definition	Score	E value	FL
HLA-DOB	major histocompatibility complex, class II, DO beta [Canis lupus familiaris].	426	e-119	O
HLA-DRB1	DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris].	302	3e-82	O
HLA-DQB1	major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris].	294	1e-79	O
LOC607827	PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris].	70.9	2e-12	O
HLA-DQA1	major histocompatibility complex, class II, DQ alpha [Canis lupus familiaris].	68.6	9e-12	O
DLA-DRA	MHC class II DR alpha chain [Canis lupus familiaris].	67.8	1e-11	O
LOC474869	PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris].	67.4	2e-11	O
AZGP1	PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis familiaris].	61.2	1e-09
DLA-79	MHC class Ib [Canis lupus familiaris].	60.1	3e-09
LOC478284	PREDICTED: similar to beta-2-microglobulin precursor isoform 2 [Canis familiaris].	59.7	4e-09	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
BOLA-DOB major histocompatibility complex, class II, DO beta [Bos taurus]. 418 e-117 O

LA-DQB MHC cell surface glycoprotein [Bos taurus]. 303 2e-82 O

BLA-DQB boLa class II histocompatibility antigen, DQB*0101 beta chain precursor [Bos taurus]. 300 1e-81 O

BOLA-DQB major histocompatibility complex, class II, DQ beta [Bos taurus]. 286 2e-77 O

BoLA-DRB3 major histocompatibility complex, class II, DRB3 [Bos taurus]. 280 1e-75 O

LOC786695 PREDICTED: major histocompatibility complex, class II, DR beta 3-like [Bos taurus]. 278 4e-75 O

BOLA-DRB2 PREDICTED: histocompatibility complex, class II, DR beta 2 [Bos taurus]. 265 4e-71 O

BOLA-DRB2 PREDICTED: histocompatibility complex, class II, DR beta 2 [Bos taurus]. 265 4e-71 O

BOLA-DYB major histocompatibility complex, class II, DY beta [Bos taurus]. 258 7e-69 O

DSB MHC class II antigen DS beta [Bos taurus]. 254 6e-68 O

Locus	Definition	Score	E value	FL
BOLA-DOB	major histocompatibility complex, class II, DO beta [Bos taurus].	418	e-117	O
LA-DQB	MHC cell surface glycoprotein [Bos taurus].	303	2e-82	O
BLA-DQB	boLa class II histocompatibility antigen, DQB*0101 beta chain precursor [Bos taurus].	300	1e-81	O
BOLA-DQB	major histocompatibility complex, class II, DQ beta [Bos taurus].	286	2e-77	O
BoLA-DRB3	major histocompatibility complex, class II, DRB3 [Bos taurus].	280	1e-75	O
LOC786695	PREDICTED: major histocompatibility complex, class II, DR beta 3-like [Bos taurus].	278	4e-75	O
BOLA-DRB2	PREDICTED: histocompatibility complex, class II, DR beta 2 [Bos taurus].	265	4e-71	O
BOLA-DRB2	PREDICTED: histocompatibility complex, class II, DR beta 2 [Bos taurus].	265	4e-71	O
BOLA-DYB	major histocompatibility complex, class II, DY beta [Bos taurus].	258	7e-69	O
DSB	MHC class II antigen DS beta [Bos taurus].	254	6e-68	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
LOC100520439 PREDICTED: HLA class II histocompatibility antigen, DO beta chain-like [Sus scrofa]. 531 e-151 O

SLA-DOB MHC class II, DO beta [Sus scrofa]. 528 e-150 O

SLA-DQB1 SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. 281 3e-76 O

LOC100513292 PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 280 1e-75 O

SLA-DRB1 MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. 278 4e-75 O

LOC100519552 PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 277 5e-75 O

LOC100155975 PREDICTED: hypothetical protein LOC100155975 [Sus scrofa]. 128 4e-30 O

SLA src-like-adapter [Sus scrofa]. 78.2 6e-15 O

SLA-7 MHC class I antigen 7 [Sus scrofa]. 74.7 7e-14

SLA-DMB MHC class II, DM beta [Sus scrofa]. 73.9 1e-13 O

Locus	Definition	Score	E value	FL
LOC100520439	PREDICTED: HLA class II histocompatibility antigen, DO beta chain-like [Sus scrofa].	531	e-151	O
SLA-DOB	MHC class II, DO beta [Sus scrofa].	528	e-150	O
SLA-DQB1	SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa].	281	3e-76	O
LOC100513292	PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa].	280	1e-75	O
SLA-DRB1	MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa].	278	4e-75	O
LOC100519552	PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa].	277	5e-75	O
LOC100155975	PREDICTED: hypothetical protein LOC100155975 [Sus scrofa].	128	4e-30	O
SLA	src-like-adapter [Sus scrofa].	78.2	6e-15	O
SLA-7	MHC class I antigen 7 [Sus scrofa].	74.7	7e-14
SLA-DMB	MHC class II, DM beta [Sus scrofa].	73.9	1e-13	O

Assembly Members: 6 TOP

Library Plate Loc. Read Name Accession Full Seq.

MLN01 0030 E01 MLN01_0030_E01.b CJ009977
PBL01 0024 F12 PBL01_0024_F12.b BP156172
PBL01 0035 A08 PBL01_0035_A08.b BP155154
PBL01 0060 A11 PBL01_0060_A11.b BP155235 AK236966
SPL01 0061 G10 SPL01_0061_G10.b CJ018538 AK397732
THY01 0112 D02 THY01_0112_D02.b BP163273

SNPs: 2 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
103 C 3 0 0.500 W N ACG/T
T 3 0 0.500 ATG/M
144 C 3 0 0.500 W N CCT/P
T 3 0 0.500 TCT/S

Alignment: TOP

20110601C-009155 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SPL01_0061_G10.b : ngggacttgtgacttaacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0112_D02.b :                                gttgcaaaaacaxxxxxxxxxxxxxxxxx
PBL01_0024_F12.b :                                 aagatgaacaxxxxxxxxxxxxxxxxxx
PBL01_0035_A08.b :                                 nnaatcaacaxxxxxxxxxxxxxxxxxx
PBL01_0060_A11.b :                                      acacaxxxxxxxxxxxxxxxxxx
MLN01_0030_E01.b :    ntttgggtaggacttgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-009155 : ...................GGGGGATTCGGAAGAGGCTGATGATTTATACAACCTCATTT
                   ---------+---------+---------+---------+---------+---------+ 41
SPL01_0061_G10.b : xxxxxxxxxxxxxxxxxxxGGGGGATTCGGAAGAGGCTGATGATTTATACAACCTCATTT
THY01_0112_D02.b : xxxxxxxxxxxxxxxxxxxxxxxxxTTCGGAATAG*CTGATGATTTATACAACCTCATTT
PBL01_0024_F12.b : xxxxxxxxxxxxxxxxxxxxxxxxaTTCGGAAGAGGCTGATGATTTATACAACCTCATTT
PBL01_0035_A08.b : xxxxxxxxxxxxxxxxxxxxxxxxxTTCGGAAGAGGCTGATGATTTATACAACCTCATTT
PBL01_0060_A11.b : xxxxxxxxxxxxxxxxxxxxxxxxxTTCCGAAGAGGCCGATGATTTATACA*CCTCATTT
MLN01_0030_E01.b : xxxxxxxxxxxxxxxxxxxxxxxxtTTCGGAAGAGGCTGATGATTTATACAACCTCATTT


20110601C-009155 : TCTTTTTCCCCCTCCAGAATGGGTTCTAGCTGGGTTCCCTGGGTGGTGGCTTTGTTAGTG
                   ---------+---------+---------+---------+---------+---------+ 101
SPL01_0061_G10.b : TCTTTTTCCCCCTCCAGAATGGGTTCTAGCTGGGTTCCCTGGGTGGTGGCTTTGTTAGTG
THY01_0112_D02.b : TCTTTTTCCCCCTCCAGAATGGGTTCTAGCTGGGTTCCCTGGGTGGTGGCTTTGTCAGTG
PBL01_0024_F12.b : TCTTTTTCCCCCTCCAGAATGGGTTCTAGCTGGGTTCCCTGGGTGGTGGCTTTGTTAGTG
PBL01_0035_A08.b : TCTTTTTCCCCCTCCAGAATGGGTTCTAGCTGGGTTCCCTGGGTGGTGGCTTTGTTAGTG
PBL01_0060_A11.b : TCTTTTTCCCCCTCCAGACTGGGTTCTAGCTGGGTTCCCTGGGTGGTGGCTTTGTTAGTG
MLN01_0030_E01.b : TCTTTTTCCCCCTCCAGAATGGGTTCTAGCTGGGTTCCCTGGGTGGTGGCTTTGTTAGTG


20110601C-009155 : ACGGTAATCAGGCTGGACTCCTCCATGACTCAAGGCAGAGATCCTCCAGAAGATTTTGTG
                   ---------+---------+---------+---------+---------+---------+ 161
SPL01_0061_G10.b : ACGGTAATCAGGCTGGACTCCTCCATGACTCAAGGCAGAGATTCTCCAGAAGATTTTGTG
THY01_0112_D02.b : ACGGTAATCAGGCTGGACTCCTCCATGACTCAAGGGAGAGATTCTCCAGAAGATTTTGTG
PBL01_0024_F12.b : ACGGTAATCAGGCTGGACTCCTCCATGACTCAAGGCAGAGATTCTCCAGAAGATTTTGTG
PBL01_0035_A08.b : ATGGTAATCAGGCTGGACTCCTCCATGACTCAAGGCAGAGATCCTCCAGAAGATTTTGTG
PBL01_0060_A11.b : ATGGTAATCAGGCTGGACTCCTCCATGACTCAAGGCAGAGATCCTCCAGAAGATTTTGTG
MLN01_0030_E01.b : ATGGTAATCAGGCTGGACTCCTCCATGACTCAAGGCAGAGATCCTCCAGAAGATTTTGTG


20110601C-009155 : ATTCAGGCAAAGGCTGACTGTTACTTCACCAATGGGACACAAAGGGTGCAGTTTGTGGTC
                   ---------+---------+---------+---------+---------+---------+ 221
SPL01_0061_G10.b : ATTCAGGCAAAGGCTGACTGTTACTTCACCAATGGGACACAAAGGGTGCAGTTTGTGGTC
THY01_0112_D02.b : ATTCAGGCAAAGGCTGACTGTTACTTCACCAATGGGACACAAAGGGTGCAGTTTGTGGTC
PBL01_0024_F12.b : ATTCAGGCAAAGGCTGACTGTTACTTCACCAATGGGACACAAAGGGTGCAGTTTGTGGTC
PBL01_0035_A08.b : ATTCAGGCAAAGGCTGACTGTTACTTCACCAATGGGACACAAAGGGTGCAGTTTGTGGTC
PBL01_0060_A11.b : ATTCAGGCAAAGGCTGACTGTTACTTCACCAATGGGACACAAAGGGTGCAGTTTGTGGTC
MLN01_0030_E01.b : ATTCAGGCAAAGGCTGACTGTTACTTCACCAATGGGACACAAAGGGTGCAGTTTGTGGTC


20110601C-009155 : AGATTCATCTTTAACTTGGAGGAGTTCGTACGTTTTGACAGCGACCTGGGGAAGTTTGTG
                   ---------+---------+---------+---------+---------+---------+ 281
SPL01_0061_G10.b : AGATTCATCTTTAACTTGGAGGAGTTCGTACGTTTTGACAGCGACCTGGGGAAGTTTGTG
THY01_0112_D02.b : AGATTCATCTTTAACTTGGAGGAGTTCGTACGTTTTGACAGCGACCTGGGGAAGTTTGTG
PBL01_0024_F12.b : AGATTCATCTTTAACTTGGAGGAGTTCGTACGTTTTGACAGCGACCTGGGGAAGTTTGTG
PBL01_0035_A08.b : AGATTCATCTTTAACTTGGAGGAGTTCGTACGTTTTGACAGCGACCTGGGGAAGTTTGTG
PBL01_0060_A11.b : AGATTCATCTTTAACTTGGAGGAGTTCGTACGTTTTGACAGCGACCTGGGGAAGTTTGTG
MLN01_0030_E01.b : AGATTCATCTTTAACTTGGAGGAGTTCGTACGTTTTGACAGCGACCTGGGGAAGTTTGTG


20110601C-009155 : GCCTTGACAGAGTTGGGGCAGCCTGATGCTGAGCTGTGGAACAGTCGACCAGATATCCTG
                   ---------+---------+---------+---------+---------+---------+ 341
SPL01_0061_G10.b : GCCTTGACAGAGTTGGGGCAGCCTGATGCTGAGCTGTGGAACAGTCGACCAGATATCCTG
THY01_0112_D02.b : GCCTTGACAGAGTTGGGGCAGCCTGATGCTGAGCTGTGGAACAGTCGAACAGATATCCTG
PBL01_0024_F12.b : GCCTTGACAGAGTTGGGGCAGCCTGATGCTGAGCTGTGGAACAGTCGACCAGATATCCTG
PBL01_0035_A08.b : GCCTTGACAGAGTTGGGGCAGCCTGATGCTGAGCTGTGGAACAGTCGACCAGATATCCTG
PBL01_0060_A11.b : GCCTTGACAGAGTTGGGGCAGCCTGATGCTGAGCTGTGGAACAGTCGACCAGATATCCTG
MLN01_0030_E01.b : GCCTTGACAGAGTTGGGGCAGCCTGATGCTGAGCTGTGGAACAGTCGACCAGATATCCTG


20110601C-009155 : GAGAGCAGCAGAGCATCTGTGGATGTGCTCTGCAGACGTAACTACTGGCTGGGTGCGCCC
                   ---------+---------+---------+---------+---------+---------+ 401
SPL01_0061_G10.b : GAGAGCAGCAGAGCATCTGTGGATGTGCTCTGCAGACGTAACTACTGGCTGGGTGCGCCC
THY01_0112_D02.b : GAAAGCAGCAGAACATTTGTGGATGTGCTCTGCAGACGTTACTACTGGCTGGGTGCGCCC
PBL01_0024_F12.b : GAGAGCAGCAGAGCATCTGTGGATGTGCTCTGCAGACGTAACTACTGGCTGGGTGCGCCC
PBL01_0035_A08.b : GAGAGCAGCAGAGCATCTGTGGATGTGCTCTACAGACGTAACTACTGGCTGGGTGCGCCC
PBL01_0060_A11.b : GAGAGCAGCAGAGCATCTGTGGATGTGCTCTGCAGACGTAACTACTGGCTGGGTGCGCCC
MLN01_0030_E01.b : GAGAGCAGCAGAGCATCTGTGGATGTGCTCTGCAGACGTAACTACTGGCTGGGTGCGCCC


20110601C-009155 : CTCACCGTGGAGAGAAAAGTGCAACCGGAGGTGACAGTGCATCCGGAGAGGACCCCGTCC
                   ---------+---------+---------+---------+---------+---------+ 461
SPL01_0061_G10.b : CTCACCGTGGAGAGAAAAGTGCAACCGGAGGTGACAGTGCATCCGGAGAGGACCCCGTCC
THY01_0112_D02.b : CTCACCGTGGAAAAAAAAGTGCAACCGGAGGTGACAGTGCATTCGGAAAGGACCCCGTCC
PBL01_0024_F12.b : CTCACCGTGGAGAGAAAAGTGCAACCGGAGGTGACAGTGCATCCGGAGAGGACCCCGTCC
PBL01_0035_A08.b : CTCACCGTGGAGAGAAAAGTGCAACCGGAGGTGACAGTGCATCCGGAGAGGACCCCGTCC
PBL01_0060_A11.b : CTCACCGTGGAGAGAAAAGTGCAACCGGAGGTGACAGTGCATCCGGAGAGGACCCCGTCC
MLN01_0030_E01.b : CTCACCGTGGAGAGAAAAGTGCAACCGGAGGTGACAGTGCATCCGGAGAGGACCCCGTCC


20110601C-009155 : CTGCAGCTCCGCAACCTGCTGCTTTGCTCTGTGACAGGGTTCTACCCAGGGGCCATCGAG
                   ---------+---------+---------+---------+---------+---------+ 521
SPL01_0061_G10.b : CTGCAGCTCCGCAACCTGCTGCTTTGCTCTGTGACAGGGTTCTACCCAGGGGCCATCGAG
THY01_0112_D02.b : CTGCAGCTCCGCAACCTGCTGCCTTGCTCTGTGACAGGGTTCTACCCAGGGGCCCATCAA
PBL01_0024_F12.b : CTGCAGCTCCGCAACCTGCTGCTTTGCTCTGTGACAGGGTTCTACCCAGGGGCCATCGAG
PBL01_0035_A08.b : CTGCAGCTCCGCAACCTGCTGCTTTGCTCTGTGACAGGGTTCTACCCAGGGGCCATCGAG
PBL01_0060_A11.b : CTGCAGCTCCACAACCTGCTGCTTTGCTCTGTGACAGGGTTCTACCCAGGGGCCATCGAG
MLN01_0030_E01.b : CTGCAGCTCCGCAACCTGCTGCTTTGCTCTGTGACAGGGTTCTACCCAGGGGCCATCGAG


20110601C-009155 : ATCAGGTGGTTCCGGAACGGGCAGGAGCAGAGAGAGGGGGTCCTGGCCACTGGCCTCGTC
                   ---------+---------+---------+---------+---------+---------+ 581
SPL01_0061_G10.b : ATCAGGTGGTTCCGGAACGGGCAGGAGCAGAGAGAGGGGGTCCTGGCCACTGGCCTCGTC
THY01_0112_D02.b : ATCAGGTGGTTTCGGAANGGGCANGAGCAGAGAGAGGGGGTCtggccactgcctcatcan
PBL01_0024_F12.b : ATCAGGTGGTTCCGGAACGGGCAGGAGCAGAGAGAGGGGGTCCTGGCCACTGGCCTCGTC
PBL01_0035_A08.b : ATCAGGTGGTTCCGGAACGGGCAGGAGCAGAGAGAGGGGGTCCTGGCCACTGGCCTCGTC
PBL01_0060_A11.b : ATCAGGTGGTTCCGGAACGGGCAGGAGCAGAGAGAGGGGGTCCTGGCCACTGGCCTCGTC
MLN01_0030_E01.b : ATCAGGTGGTTCCGGAACGGGCAGGAGCAGAGAGAGGGGGTCCTGGCCACTGGCCTCGTC


20110601C-009155 : AGGAATGGAGACTGGACCTTTCAGACAGTGGTGATGCTGGAAATGACTCCTGAGCTTGGG
                   ---------+---------+---------+---------+---------+---------+ 641
SPL01_0061_G10.b : AGGAATGGAGACTGGACCTTTCAGACAGTGGTGATGCTGGAAATGACTCCTGAGCTTGGG
THY01_0112_D02.b : gaatgagactggaccttcaacagtgttgatcttgaaatacccctagccttg        
PBL01_0024_F12.b : AGGAATGGAGACTGGACCTTTCAGACAGTGGTGATGCTGGAAATGACTCCTGAGCTTTGG
PBL01_0035_A08.b : AGGAATGGAGACTGGACCTTTCAGACAGTGGTGATGCTGGAAATGACTCCTGAGCTTTGG
PBL01_0060_A11.b : AGGAATGGAGACTGGACCTTTCAGACAGTGGTGATGCTGGAAATGACTCCTGAGCTTGGG
MLN01_0030_E01.b : AGGAATGGAGACTGGACCTTTCAGACAGTGGTGATGCTGGAAATGACTCCTGAGCTTGGG


20110601C-009155 : GACGTCTACACCTGCCTTGTTGATCATCCCAGCCTGCTGAGCCCCGTTTCTGTGGAGTGG
                   ---------+---------+---------+---------+---------+---------+ 701
SPL01_0061_G10.b : GACGTCTATACCTGCCTTGTTGATCATCCCAGCCTGCTGAGCCCCGTTTCTGTGGAGTGG
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b : GACGTCTACACCTGCCTTGGTGATCATCCCAGCCTGCTGAGCCCCGTTTCTGTGGAGTGG
PBL01_0035_A08.b : GACGTCTACACCTGCCCTTGTGATCATCCCAGCCTGCTGAGCCCCGTTTCTGTGGAGTGG
PBL01_0060_A11.b : GACGTCTACACCTGCCTTGTTGATCATCCCAGCCTGCTGAGCCCCGTTTCTGTGGAGTGG
MLN01_0030_E01.b : GACATCTACACCTGCCTTGTTGATCATCCCAGCCTGCTGAGCCCCGTTTCTGTGGAGTGG


20110601C-009155 : AGAGCTCAGTCTGACTGTTCTTGGACAAAGCTGCTGATTGGAGTTGCAGCCTTCCTGGGG
                   ---------+---------+---------+---------+---------+---------+ 761
SPL01_0061_G10.b : AGAGCTCAGTCTGACTGTTCTTGGACAAAGCTGCTGATTGGAGTTGCAGCCTTCCTGGGG
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b : AGAGCTCAGTCTGACTGTTCTTTGGACAAGCTGCTGATTGGAGTTGCAGCCTTTCTGGGG
PBL01_0035_A08.b : AGAGCTCAGTCTGACTGTTTTCTGGACAAGCTGCTGATTGGAGTTGCAGCCTTCCTGGGG
PBL01_0060_A11.b : AGAGCTCAGTCTGACTGTTCTTGGACAAAGCTGCTGATTGGAGTTGCAGCCTTCCTGGGG
MLN01_0030_E01.b : AGAGCTCAGTCTGACTGTTCTTGGACAAAGCTGCTGATTGGAGTTGCAGCCTTCCTGGGG


20110601C-009155 : GGGCTAACCTT*CCTCCTGGTGGGGATCATCATCCACGTCAGGGCCCGCAAAGGATGTGT
                   ---------+---------+---------+---------+---------+---------+ 820
SPL01_0061_G10.b : GGGCTAACCT**CCTCCTGGTGGGGATCATCATCCACGTCAGGGCCCGCAAaggacgtgt
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b : GGGCTAACCTTTCCTCCTGGTGGGGATCATCATCCACGTCAAGGCCCGCAAagacgtgtg
PBL01_0035_A08.b : GGGCTAACCTT**CTCCCTGGTGGGATCATCATCCACGTCAGGGCCCGCAAaggacgtgt
PBL01_0060_A11.b : GGGCTAACCTT*CCTCCTGGTGGGGATCATCATCCACGTCAGGGCCCGCAAAGGACGTGT
MLN01_0030_E01.b : GGGCTAACCTT*CCTCCTGGTGGGGATCATCATCCACGTCAGAGCCCGCAAAGGATGTGT


20110601C-009155 : GGAGACTCAGCTGTCCGGTGATGAGCCACACTAAAGTCCTAGGCGAAGCGTCTCCCCCTG
                   ---------+---------+---------+---------+---------+---------+ 880
SPL01_0061_G10.b : ggagactcagctgtcccgtgatgaaccacactaaggccctagttgagcccctccccctga
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b : gagactcanctgtccggtgatgacccaactanggtcctaagtgaaacgtctccccctgga
PBL01_0035_A08.b : ggagactcagctgtccggtgatgagcacactaaggtcctangtgaagcgtcttccctgga
PBL01_0060_A11.b : GGAGACTCAGCTGTCCCGTGATGAGCCACACTAAGGTCCTAGGtgaaacgtctcccctga
MLN01_0030_E01.b : GGAGACTCAGCTGTCCGGTGATGAGCCACACTAAAGTCCTAGGCGAAGCGTCTCCCCCTG


20110601C-009155 : GAGCCTGAGTTGGAACTGAGTGGCCTGGGCCCTGNNACAAGTCCAGGACGTTCAGGAAGT
                   ---------+---------+---------+---------+---------+---------+ 940
SPL01_0061_G10.b : aacccggaatggaactgaatgggcctgggccctggaaaaagtcaaggaccttccggaggg
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b : cctgaatggaactgaatggcctgggcctggaacaaagtcaggagttcaggaagtccatgt
PBL01_0035_A08.b : gcctgaattgnaactgagtggcctgggccctgnacaagttcaggacgtttcagaagtcga
PBL01_0060_A11.b : accctgaagtggaactgagtggcctggggcctggacaaagtccaggacgtttcagaaggc
MLN01_0030_E01.b : GAGCCTGAGTTGGAACTGAGTGGCCTGGGCCCTGNNACAAGTCCAGGACGTTCAGGAAGT


20110601C-009155 : CCATGTTCTGGAAGATTCCTTTC.....................................
                   ---------+---------+---------+---------+---------+---------+ 963
SPL01_0061_G10.b : ccaaggttctggaatgatccctttccagtgagcctttgaaggcgtccctgaaatgaatcc
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b : tccggatgattcctttcatgaacctttgaaggctgccggaaccgattcaattttgggtcc
PBL01_0035_A08.b : tgtccggatgattccttccatgacccctggaggcgtctgaccgaatccagtttgggtcgg
PBL01_0060_A11.b : catgttctggatgattcctttccctgaccccctggaggcgtcctgaacgattccagtttt
MLN01_0030_E01.b : CCATGTTCTGGAAGATTCCTTTCcacgagcccttggaggtgtcctggactgaatccagtt


20110601C-009155 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 963
SPL01_0061_G10.b : taggtta                                                    
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b : gggataatcaactcttaccttttgcccttcttcccccaattggtcttataaacccgggtt
PBL01_0035_A08.b : gatcatcaaccctaccctttggcttcttccccaactggcttaatagccccgtttcaaaaa
PBL01_0060_A11.b : gggttccgagaacattcatcccttaccctttggcctttcttcccccacttgtccttaata
MLN01_0030_E01.b : tggggtcgggatcattcaactcttaccctttgcctttcttcccccacttgtctttataag


20110601C-009155 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 963
SPL01_0061_G10.b :                                                             
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b : caaaaaaaggggtctaaaatccccttaaatctaatcctccaatcccaccccttttttttc
PBL01_0035_A08.b : agggttcctaattccctaaaaccattcccccatcccacctttattttcttgtgaccctac
PBL01_0060_A11.b : agccccggttctaaaaacggggtccctaaatccccctaaaaaccagtccctccaagtcca
MLN01_0030_E01.b : ccctgtttctaaaaaggggtcccaaatccccttaaacccactcctcccagtcaacccttt


20110601C-009155 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 963
SPL01_0061_G10.b :                                                             
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b : ttgtggaaccctaaccaaaatccattttttttttcttttgaagggggccccggctaaaag
PBL01_0035_A08.b : ccaaacctatttttttctcttgaggagcccaacctaaaggagcaatccccgttcctcctg
PBL01_0060_A11.b : acccctttatttttcttggggcacccctaacccaaaatacctattttaattttccccttg
MLN01_0030_E01.b : tatttttttggtcaccttaccaaaaaccatatttatttcctttgaagggagccccaggcc


20110601C-009155 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 963
SPL01_0061_G10.b :                                                             
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b : aagcaattcccccggtccctttctggtttaggcttttctttaaaaacggggaaaataccc
PBL01_0035_A08.b : tttaggctttctaaaaacgggaactatcccccggttattaatttttggaaccgttcccct
PBL01_0060_A11.b : aaagggagccccccatccctaaaggaggcaatatccccccggttccctttcctggtttta
MLN01_0030_E01.b : taaaaaagcatatcgcccgggcctttcttgttttaagctttctcccaaaaaactggtaat


20110601C-009155 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 963
SPL01_0061_G10.b :                                                             
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b : cccaggaattcaatattttggggaccctttttacccctttccaaaattttttttt    
PBL01_0035_A08.b : ccgaaatttgggtctgggaccaaaacattccgtgcctttttgaaaaccccggatttccgg
PBL01_0060_A11.b : aggcctttctccccaannaaacgcgggaacaaataccccctcacaggtaaatctcacaaa
MLN01_0030_E01.b : tatcccccaatgtatttta                                        


20110601C-009155 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 963
SPL01_0061_G10.b :                                                             
THY01_0112_D02.b :                                                             
PBL01_0024_F12.b :                                                             
PBL01_0035_A08.b : cccaaaaaaaaatnagggggggcaaacccccacatctttttttcttttttttttt    
PBL01_0060_A11.b : tatttctgggcacctcc                                          
MLN01_0030_E01.b :