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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-010044

Length: 851

Sequence [FASTA format sequence]
GAAGCGGCCC GCGGCGGAGG GAGGGAAGGC CGAGTCCTGG AAGCGGAGCT CCGCGCTGGG
ACTGGTTCCT TCGCAGCCAT TTTCTGTCCA ACCAAACAGC CGATTGGAGA CGGGAGCCAA
CCAGGGCTGC ATTGGAGGTT GAAATTGGCA AAGATCAGAC ACCTTTTTAG ACAGGTGTTC
TGGAGTAGCA CTGACAACAC GGTTCACCCA GTATTTCATG ACAATGGACG GTGACAGTTC
TACAACAGAT GCTTCTCAAC TCGGAATTTC TGCAGACTAT ATTGGAGGAA GTCATTATGT
CATACAGCCT CATGATGATA CTGAGGACAG CATGAATGAT CATGAAGACA CAAATGGTTC
AAAAGAAAGT TTTAGAGAAC AAGATATATA TCTTCCAATT GCAAATGTTG CAAGGATAAT
GAAAAATGCC ATACCTCAAA CGGGAAAGAT TGCAAAAGAT GCCAAAGAAT GTGTTCAAGA
GTGTGTGAGT GAGTTCATCA GCTTTATCAC ATCTGAAGCA AGTGAGAGAT GCCATCAAGA
GAAACGGAAG ACAATCAATG GGGAAGATAC TCTCTTCGCC ATGTCTACTC TGGGCTTTGA
CAGTTATGTA GAACCTCTGA AGTTGTACCT TCAGAAGTTC AGAGAGGCTA TGAAAGGAGA
GAAGGGAATT GGTGGAGCAG TCACAGCTAC AGATGGACTG AGTGAAGAGC TTACAGAAGA
GGCATTTACG AACCAGCTGC CAGCTGGCTT AATAACCGCA GATGGTCAGC AACAAAATGT
CATGGTTTAC ACAACATCAT ATCAACAGAT CTCTGGTGTT CCGCAAATTC AGTTTTCATG
ATCTGAAGAA A


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinNFYBnuclear transcription factor Y subunit beta [Homo sapiens]. 407e-114O
Contig/Assembly ProteinPOLE3DNA polymerase epsilon subunit 3 [Homo sapiens]. 73.23e-13O
Contig/Assembly ProteinDR1protein Dr1 [Homo sapiens]. 71.68e-13O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinNfybnuclear transcription factor Y subunit beta [Mus musculus]. 407e-114O
Contig/Assembly ProteinPole3DNA polymerase epsilon subunit 3 [Mus musculus]. 72.83e-13O
Contig/Assembly ProteinDr1protein Dr1 [Mus musculus]. 71.67e-13O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC475450PREDICTED: similar to nuclear transcription factor-Y beta isoform 1 [Canis familiaris]. 405e-113O
Contig/Assembly ProteinLOC475450PREDICTED: similar to nuclear transcription factor-Y beta isoform 2 [Canis familiaris]. 387e-108O
Contig/Assembly ProteinLOC612550PREDICTED: similar to DNA polymerase epsilon p17 subunit (DNA polymerase epsilon subunit 3) (YB-like protein 1) (YBL1) (NF-YB-like protein) [Canis familiaris]. 73.23e-13
Contig/Assembly ProteinLOC479943PREDICTED: similar to down-regulator of transcription 1 [Canis familiaris]. 71.68e-13O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinNFYBnuclear transcription factor Y subunit beta [Bos taurus]. 407e-114O
Contig/Assembly ProteinLOC100335987PREDICTED: nuclear transcription factor-Y beta-like [Bos taurus]. 401e-112O
Contig/Assembly ProteinLOC100335987PREDICTED: nuclear transcription factor-Y beta-like [Bos taurus]. 401e-112O
Contig/Assembly ProteinLOC790861PREDICTED: nuclear transcription factor Y, beta-like, partial [Bos taurus]. 397e-111O
Contig/Assembly ProteinLOC781331PREDICTED: nuclear transcription factor Y, beta-like, partial [Bos taurus]. 2846e-77O
Contig/Assembly ProteinPOLE3DNA polymerase epsilon subunit 3 [Bos taurus]. 73.23e-13O
Contig/Assembly ProteinDR1protein Dr1 [Bos taurus]. 71.68e-13O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinNFYBnuclear transcription factor Y subunit beta [Sus scrofa]. 408e-114O
Contig/Assembly ProteinLOC100514578PREDICTED: nuclear transcription factor Y subunit beta-like [Sus scrofa]. 408e-114O
Contig/Assembly ProteinLOC100517450PREDICTED: DNA polymerase epsilon subunit 3-like [Sus scrofa]. 73.91e-13O
Contig/Assembly ProteinLOC100152776PREDICTED: protein Dr1-like [Sus scrofa]. 71.27e-13O
Contig/Assembly ProteinLOC100624119PREDICTED: protein Dr1-like [Sus scrofa]. 62.82e-10O


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
AMP010013F07AMP01_0013_F07.bBW955960 AK343671
AMP010058C07AMP01_0058_C07.bBW959165 
AMP010076G09AMP01_0076_G09.bBW960500 
OVRM10121B02OVRM1_0121_B02.bBP146321 AK235862

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
570C200.500WNACT/T
T110.500ATT/I


Alignment:      TOP

20110601C-010044 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0121_B02.b : nagtttgtcxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0013_F07.b : nnnnttactaatcaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0058_C07.b : atcatagccgtacttxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0076_G09.b : atcccctataagatatctaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-010044 : ..............................GAAGCGGCCCGCGGCGGAGGGAGGGAAGGC
---------+---------+---------+---------+---------+---------+ 30
OVRM1_0121_B02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAGCGGCCCGCGGCGGAGGGAGGGAAGGC
AMP01_0013_F07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0058_C07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0076_G09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-010044 : CGAGTCCTGGAAGCGGAGCTCCGCGCTGGGACTGGTTCCTTCGCAGCCATTTTCTGTCCA
---------+---------+---------+---------+---------+---------+ 90
OVRM1_0121_B02.b : CGAGTCCTGGAAGCGGAGCTCCGCGCTGGGACTGGTTCCTTCGCAGCCATTTTCTGTCCA
AMP01_0013_F07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCCATTTTCTGTCCA
AMP01_0058_C07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCCATTTTCTGTCCA
AMP01_0076_G09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCCATTTTCTGTCCA
20110601C-010044 : ACCAAACAGCCGATTGGAGACGGGAGCCAACCAGGGCTGCATTGGAGGTTGAAATTGGCA
---------+---------+---------+---------+---------+---------+ 150
OVRM1_0121_B02.b : ACCAAACAGCCGATTGGAGACGGGAGCCAACCAGGGCTGCATTGGAGGTTGAAATTGGCA
AMP01_0013_F07.b : ACCAAACAGCCGATTGGAGACGGGAGCCAACCAGGGCTGCATTGGAGGTTGAAATTGGCA
AMP01_0058_C07.b : ACCAAACAGCCGATTGGAGACGGGAGCCAACCAGGGCTGCATTGGAGGTTGAAATTGGCA
AMP01_0076_G09.b : ACCAAACAGCCGATTGGAGACGGGAGCCAACCAGGGCTGCATTGGAGGTTGAAATTGGCA
20110601C-010044 : AAGATCAGACACCTTTTTAGACAGGTGTTCTGGAGTAGCACTGACAACACGGTTCACCCA
---------+---------+---------+---------+---------+---------+ 210
OVRM1_0121_B02.b : AAGATCAGACACCTTTTTAGACAGGTGTTCTGGAGTAGCACTGACAACACGGTTCACCCA
AMP01_0013_F07.b : AAGATCAGACACCTTTTTAGACAGGTGTTCTGGAGTAGCACTGACAACACGGTTCACCCA
AMP01_0058_C07.b : AAGATCAGACACCTTTTTAGACAGGTGTTCTGGAGTAGCACTGACAACACGGTTCACCCA
AMP01_0076_G09.b : AAGATCAGACACCTTTTTAGACAGGTGTTCTGGAGTAGCACTGACAACACGGTTCACCCA
20110601C-010044 : GTATTTCATGACAATGGACGGTGACAGTTCTACAACAGATGCTTCTCAACTCGGAATTTC
---------+---------+---------+---------+---------+---------+ 270
OVRM1_0121_B02.b : GTATTTCATGACAATGGACGGTGACAGTTCTACAACAGATGCTTCTCAACTCGGAATTTC
AMP01_0013_F07.b : GTATTTCATGACAATGGACGGTGACAGTTCTACAACAGATGCTTCTCAACTCGGAATTTC
AMP01_0058_C07.b : GTATTTCATGACAATGGACGGTGACAGTTCTACAACAGATGCTTCTCAACTCGGAATTTC
AMP01_0076_G09.b : GTATTTCATGACAATGGACGGTGACAGTTCTACAACAGATGCTTCTCAACTCGGAATTTC
20110601C-010044 : TGCAGACTATATTGGAGGAAGTCATTATGTCATACAGCCTCATGATGATACTGAGGACAG
---------+---------+---------+---------+---------+---------+ 330
OVRM1_0121_B02.b : TGCAGACTATATTGGAGGAAGTCATTATGTCATACAGCCTCATGATGATACTGAGGACAG
AMP01_0013_F07.b : TGCAGACTATATTGGAGGAAGTCATTATGTCATACAGCCTCATGATGATACTGAGGACAG
AMP01_0058_C07.b : TGCAGACTATATTGGAGGAAGTCATTATGTCATACAGCCTCATGATGATACTGAGGACAG
AMP01_0076_G09.b : TGCAGACTATATTGGAGGAAGTCATTATGTCATACAGCCTCATGATGATACTGAGGACAG
20110601C-010044 : CATGAATGATCATGAAGACACAAATGGTTCAAAAGAAAGTTTTAGAGAACAAGATATATA
---------+---------+---------+---------+---------+---------+ 390
OVRM1_0121_B02.b : CATGAATGATCATGAAGACACAAATGGTTCAAAAGAAAGTTTTAGAGAACAAGATATATA
AMP01_0013_F07.b : CATGAATGATCATGAAGACACAAATGGTTCAAAAGAAAGTTTTAGAGAACAAGATATATA
AMP01_0058_C07.b : CATGAATGATCATGAAGACACAAATGGTTCAAAAGAAAGTTTTAGAGAACAAGATATATA
AMP01_0076_G09.b : CATGAATGATCATGAAGACACAAATGGTTCAAAAGAAAGTTTTAGAGAACAAGATATATA
20110601C-010044 : TCTTCCAATTGCAAATGTTGCAAGGATAATGAAAAATGCCATACCTCAAACGGGAAAGAT
---------+---------+---------+---------+---------+---------+ 450
OVRM1_0121_B02.b : TCTTCCAATTGCAAATGTTGCAAGGATAATGAAAAATGCCATACCTCAAACGGGAAAGAT
AMP01_0013_F07.b : TCTTCCAATTGCAAATGTTGCAAGGATAATGAAAAATGCCATACCTCAAACGGGAAAGAT
AMP01_0058_C07.b : TCTTCCAATTGCAAATGTTGCAAGGATAATGAAAAATGCCATACCTCAAACGGGAAAGAT
AMP01_0076_G09.b : TCTTCCAATTGCAAATGTTGCAAGGATAATGAAAAATGCCATACCTCAAACGGGAAAGAT
20110601C-010044 : TGCAAAAGATGCCAAAGAATGTGTTCAAGAGTGTGTGAGTGAGTTCATCAGCTTTATCAC
---------+---------+---------+---------+---------+---------+ 510
OVRM1_0121_B02.b : TGCAAAAGATGCTAAAGAATGTGTTCAAGAGTGTGTGAGTGAGTTCATCAGCTTTATCAC
AMP01_0013_F07.b : TGCAAAAGATGCCAAAGAATGTGTTCAAGAGTGTGTGAGTGAGTTCATCAGCTTTATCAC
AMP01_0058_C07.b : TGCAAAAGATGCCAAAGAATGTGTTCAAGAGTGTGTGAGTGAGTTCATCAGCTTTATCAC
AMP01_0076_G09.b : TGCAAAAGATGCCAAAGAATGTGTTCAAGAGTGTGTGAGTGAGTTCATCAGCTTTATCAC
20110601C-010044 : ATCTGAAGCAAGTGAGAGATGCCATCAAGAGAAACGGAAGACAATCAATGGGGAAGATAC
---------+---------+---------+---------+---------+---------+ 570
OVRM1_0121_B02.b : ATCTGAAGCAAGTGAGAGATGCCATCAAGAGAAACGGAAGACAATCAATGGGGAAGATAT
AMP01_0013_F07.b : ATCTGAAGCAAGTGAGAGATGCCATCAAGAGAAACGGAAGACAATCAATGGGGAAGATAT
AMP01_0058_C07.b : ATCTGAAGCAAGTGAGAGATGCCATCAAGAGAAACGGAAGACAATCAATGGGGAAGATAC
AMP01_0076_G09.b : ATCTGAAGCAAGTGAGAGATGCCATCAAGAGAAACGGAAGACAATCAATGGGGAAGATAC
20110601C-010044 : TCTCTTCGCCATGTCTACTCTGGGCTTTGACAGTTATGTAGAACCTCTGAAGTTGTACCT
---------+---------+---------+---------+---------+---------+ 630
OVRM1_0121_B02.b : TCTCTTCGCCATGTCTACTCTGGGCTTTGACAGTTATGTAGAACCTCTGAAGTTGTACCT
AMP01_0013_F07.b : TCTCTTCGCCATGTCTACTCTGGGCTTTGACAGTTATGTAGAACCTCTGAAGTTGTACCT
AMP01_0058_C07.b : TCTCTTCGCCATGTCTACTCTGGGCTTTGACAGTTATGTAGAACCTCTGAAGTTGTACCT
AMP01_0076_G09.b : TCTCTTCGCCATGTCTACTCTGGGCTTTGACAGTTATGTAGAACCTCTGAAGTTGTACCT
20110601C-010044 : TCAGAAGTTCAGAGAGGCTATGAAAGGAGAGAAGGGAATTGGTGGAGCAGTCACAGCTAC
---------+---------+---------+---------+---------+---------+ 690
OVRM1_0121_B02.b : TCAGAAGTTCAGAGAGGCTATGAAAGGAGAGAAGGGGATTGGTGGAGCAGTCACAGCTAC
AMP01_0013_F07.b : TCAGAAGTTCAGAGAGGCTATGAAAGGAGAGAAGGGAATTGGTGGAGCAGTCACAGCTAC
AMP01_0058_C07.b : TCAGAAGTTCAGAGAGGCTATGAAAGGAGAGAAGGGAATTGGTGGAGCAGTCACAGCTAC
AMP01_0076_G09.b : TCAGAAGTTCAGAGAGGCTATGAAAGGAGAGAAGGGAATTGGTGGAGCAGTCACAGCTAC
20110601C-010044 : AGATGGACTGAGTGAAGAGCTTACAGAAGAGGCATTTACGAACCAGCTGCCAGCTGGCTT
---------+---------+---------+---------+---------+---------+ 750
OVRM1_0121_B02.b : AGATGGACTGAGTGTGGAGCTTACAGAAGAAGCATTTACGAACCAGTTGCCAGCTGGCTT
AMP01_0013_F07.b : AGATGGACTGAGTGAAGAGCTTACAGAAGAGGCATTTACGAACCAGTTGCCAGCTGGCTT
AMP01_0058_C07.b : AGATGGACTGAGTGAAGAGCTTACAGAAGAGGCATTTACGAACCAGCTGCCAGCTGGCTT
AMP01_0076_G09.b : AGATGGACTGAGTGAAGAGCTTACAGAAGAGGCATTTACGAACCAGCTGCCAGCTGGCTT
20110601C-010044 : AATAACCGCAGATGGTCAGCAACAAAATGTCATGGTTTACACAACATCATATCAACAGAT
---------+---------+---------+---------+---------+---------+ 810
OVRM1_0121_B02.b : AATAACCGCACATGGTCAcn
AMP01_0013_F07.b : AATAACCGCAGATGGTCAGCAACAAAATGTCATGGTTTACACAACATCATATCAACAGAT
AMP01_0058_C07.b : AATAACCGCAGATGGTCAGCAACAAAATGTCATGGTTTACACAACATCATATCAACAGAT
AMP01_0076_G09.b : AATAACCGCAGATGGTCAGCAACAAAATGTCATGGTTTTACACACATCATATCAACAGAT
20110601C-010044 : CTCTGGTGTTCCGCAAATTCAGTTTTCATGATCTGAAGAAA...................
---------+---------+---------+---------+---------+---------+ 851
OVRM1_0121_B02.b :
AMP01_0013_F07.b : CTCTGGTGTTCAGCAAATTCAGTTTTCATGATCTGAAGAAAtgaccgaatggagaatgta
AMP01_0058_C07.b : CTCTGGGTGTCAGCAAATTCAGTTTTCATGATCTGAAGAAAatgacgagtggaagatgta
AMP01_0076_G09.b : CTCTGGGGTGTCAGCAATTCAGTTTTCATGATCTGAAGAAAtgacggagtggnagatgta
20110601C-010044 : ............................................................
---------+---------+---------+---------+---------+---------+ 851
OVRM1_0121_B02.b :
AMP01_0013_F07.b : naaaagtgaaagtgtatgattctggaccagagacattaaaaagacatgactggtgaaaag
AMP01_0058_C07.b : naaaaagtgaaagtgtatgattctggaacaaagacattaaaaggacatgactggtgaaaa
AMP01_0076_G09.b : naaaagtgaaggtgtatgattctggaacagagacattagaaggacatgactggtgaaaag
20110601C-010044 : ............................................................
---------+---------+---------+---------+---------+---------+ 851
OVRM1_0121_B02.b :
AMP01_0013_F07.b : atgtccccttgaatattaataactgtaatgtagcttccccatgcttgacaaattgagggg
AMP01_0058_C07.b : gatgtctctttgtatataaataactgtaatgtaacttcccaatgctgacaaatgaggtgt
AMP01_0076_G09.b : atgtctctttgtatataaatagctgtatgtaccttcccnatgctgactanntgagtgtna
20110601C-010044 : ............................................................
---------+---------+---------+---------+---------+---------+ 851
OVRM1_0121_B02.b :
AMP01_0013_F07.b : taaatctgactttaaaactttttcttgatgattttaagaaaaatttaatttttaaggttt
AMP01_0058_C07.b : taatctgactgaaaatctttttctgatgatttaaagaaaatttgaatttaaggaataaat
AMP01_0076_G09.b : atctganctgagatcttttcatgatgatttaagaaaaattgattttaaggtataatattt
20110601C-010044 : ............................................................
---------+---------+---------+---------+---------+---------+ 851
OVRM1_0121_B02.b :
AMP01_0013_F07.b : taaaaatttttttttttcaaaaaattgttcccggataaccccgtagcctttaatttccat
AMP01_0058_C07.b : ttttttgtttgaccaaatttgtgccctgaagaacctgtagcctggaattgcatttatacg
AMP01_0076_G09.b : ttgtttgaccaagttgtgctcgaagaccccgtagcatgtattgcatttataccgccaaat
20110601C-010044 : ............................................................
---------+---------+---------+---------+---------+---------+ 851
OVRM1_0121_B02.b :
AMP01_0013_F07.b : ttttcgggcaagatttaaacgtttttatttaattaacacgttctttttattaaaaaaccg
AMP01_0058_C07.b : tcaaaaattgaaccgttcctaattccattgacccgtaatttggaaccagaaacccggggt
AMP01_0076_G09.b : ggaaccgttctatttccatggacaggtacttggacccggagcccgggtattccgttccct
20110601C-010044 : ............................................................
---------+---------+---------+---------+---------+---------+ 851
OVRM1_0121_B02.b :
AMP01_0013_F07.b : gggaattgtttccttaaaaa
AMP01_0058_C07.b : attcgtttgccctaaaaaaaaaggtgag
AMP01_0076_G09.b : taaaaaaaagggaagtcttttaggccgtcctttaaaagggtggcaaacaaacggcggacc
20110601C-010044 : ............................................................
---------+---------+---------+---------+---------+---------+ 851
OVRM1_0121_B02.b :
AMP01_0013_F07.b :
AMP01_0058_C07.b :
AMP01_0076_G09.b : ccgggtctcttctcatatttt