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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-012346

Length: 975

Sequence:  [FASTA format sequence]
GGCTCTTTGT GCGGTAAACT CGTGGCTGGT GAGGATGGCC GTCGCGGAGT TCGCCTGGCT
TTTGCTGCGA AACCGTCCCC AAAGGCGGGG GAGGGTGCCG CCCGGCACAT TTGCTTAGCT
GCGCACATGC AGGCCCCTGG TGCTCGAAGG AAGATCCGCA GCGCGACGAG GGAGTGTAAG
ATGTCCACAT CTTAAATGGC CGCACTCGCC GCGTAAGTCC AGGGCCAAGG ATCGAAGCCC
AGCCGCAGAA GCACGGAATC CTTTAACCTG CATCAGGCTG GGGATGGAAC CCGCACCTCC
GCAGCGACCC CAGCAGCTGC AGTCGTATTT TTAACACAGT GCGCAAGAGC GGGAACTCCT
TATTTTTGAA TAAGGCCCGA GAGCTCCTTA TCTTTGAAGC CCAGCCAGGG GCTGTCCCTT
TCAGAGATCT GGGCTAGACT GGAAAGATTC TGGAAGGCCT AAGGTTTGGA ATTCTCTTGA
AGAGCTGACA GGATGGCTGT GGTGCCCATA TAGTGGTTCC TGCCACTTGA ACAGGCTGTG
AGAAGTGGAG AAGATGCCTT CAGCTTGGGT TCTGTGGTGT TGCTTTTGTG AAATTTCAGA
ACTTTGCAGA CACAAAAGGA TGTCCTCTCT GGTGTTGGAC AGATCTTGGG AGCTTCACAT
CTTTCCTGCA TTAACACATG GGAGCAGCTA TCAACTCTTC CGAGCCAGGC GAACTGCCTA
GAAATTTGGG GACCCTTAAA TATCAATTAG GTGGTCTTCA CTTCTTTACT TGGTTTTAGC
AAAAGGATTC CAATAAAATA TTTAAAAGTA AATGAAAAAT AGATTGGTCT TAAGCCATTA
CAACCACCAG AGCCACTGCA GTGACAACAC CAGATCCTTG ACCTGCTGCG CCTCAAGGGA
AATCCTGATA GTTGAGGTTT TTATGAGACT GTTACCACAG TTATCCCTTT TGGCTTTTGA
TGAATTGGGT GAAAA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100624113	PREDICTED: hypothetical protein LOC100624113 [Sus scrofa].	120	1e-27

Alignment:      TOP

20110601C-012346 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRT1_0052_G12.b :                    nnggctttnnnnnttttccgttagcgnacgagtgxxxxxxx
SMG01_0070_E05.b :                                        nnccctatatnnnnggagtaa
UTR01_0083_D04.b :                         nnnnggctaggactatgacxxxxxxxxxxxxxxxxx
OVR01_0001_B03.b : atgttgcccatctagaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0032_F09.b :                                           cxxxxxxxxxxxxxxxxx


20110601C-012346 : ..........................................GGCTCTTTGTGCGGTAAA
                   ---------+---------+---------+---------+---------+---------+ 18
OVRT1_0052_G12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxctttGGCTCTTTGTGCGGTAAA
SMG01_0070_E05.b : gcagcggtaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCTTTGTGCGGTAAA
UTR01_0083_D04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCTTTGTGCGGTAAA
OVR01_0001_B03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCTTTGTGCGGTAAA
OVRM1_0032_F09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgCTTTGTGCGGTAAA


20110601C-012346 : CTCGTGGCTGGTGAGGATGGCCGTCGCGGAGTTCGCCTGGCTTTTGCTGCGAAACCGTCC
                   ---------+---------+---------+---------+---------+---------+ 78
OVRT1_0052_G12.b : CTCGTGGCTGGTGAGGACCGCCGTCGCGGAGTTCGCCTGGCTTTTGCTGCGAAACCGTCC
SMG01_0070_E05.b : CTCGTGGCTGCTGAGGATGGCCGTCGCGGAGTTCGCCTGGCTTTTGCTGCGAAACCGTCC
UTR01_0083_D04.b : CTCGTGGCTGGTGAGGATGGCTGTCGCGGAGTTCGCCTGGCTTTTGCTGCGAAACCGTCC
OVR01_0001_B03.b : CTCGTGGCTGCTGAGGATGGCCGTCGCGGAGTTCGCCTGGCTTTTGCTGCGAAACCGTCC
OVRM1_0032_F09.b : CTCGTGGCTGGTGAGGATGGCCGTCGCGGAGTTCGCCTGGCTTTTGCTGCGAAACCGTCC


20110601C-012346 : CCAAAGGCGGGGGAGGGTGCCGCCCGGCACATTTGCTTAGCTGCGCACATGCAGGCCCCT
                   ---------+---------+---------+---------+---------+---------+ 138
OVRT1_0052_G12.b : CCAAAGGCGGGGGAGGGTGCCGCCCGGCACATTTGCTTAGCTGCGCACATGCAGGCCCCT
SMG01_0070_E05.b : CCAAAGGCGGGGGAGGGTGCCGCCCGGCACATTTGCTTAGCTGCGCACATGCAGGCCCCT
UTR01_0083_D04.b : CCAAAGGCGGGGGAGGGTGCCGCCCGGCACATTTGCTTAACTGCGCACATGCATGCCCCT
OVR01_0001_B03.b : CCAAAGGCGGGGGAGGGTGCCGCCCGGCACATTTGCTTAGCTGCGCACATGCAGGCCCCT
OVRM1_0032_F09.b : CCAAAGGCGGGGGAGGGTGCCGCCCGGCACATTTGCTTAGCTGCGCACATGCAGGCCCCT


20110601C-012346 : GGTGCTCGAAGGAAGATCCGCAGCGCGACGAGGGAGTGTAAGATGTCCACATCTTAAATG
                   ---------+---------+---------+---------+---------+---------+ 198
OVRT1_0052_G12.b : GGTGCTCGAAGGAAGATCCGCAGCGCGACGAGGGAGTGTAAGATGTCCACATCTTAAATG
SMG01_0070_E05.b : GGTGCTCGAAGGAAGATCCGAAGCGCGACGAGGGAGTGTAAGATGTCCACATCTTAAATG
UTR01_0083_D04.b : GGTGCTCGAAGGAAGATCCGCAGCGCGACAAGGGAGTGTAAGATGTCCACATCTTAAATG
OVR01_0001_B03.b : GGTGCTCGAAGGAAGATCCGAAGCGCGACGGGGGAGTGTAAGATGTCCACATCTTAAATG
OVRM1_0032_F09.b : GGTGCTCGAAGGAAGATCCGCAGCGCGACGAGGGAGTGTAAGATGTCCACATCTTAAATG


20110601C-012346 : GCCGCACTCGCCGCGTAAGTCCAGGGCCAAGGATCGAAGCCCAGCCGCAGAAGCACGGAA
                   ---------+---------+---------+---------+---------+---------+ 258
OVRT1_0052_G12.b : GCCGCACTCGCCGCGTAAGTCCAGGGCCAAGgatcgaagcccagccgcagaagcacggaa
SMG01_0070_E05.b : GCCGCACTCGCCGCGTAAGTCCAGGGCCAAGgatcgaagcccagccgcagaagcacggaa
UTR01_0083_D04.b : GCCGCACTCGCCGCGTAAGTCCAGGGCCAAGgatcgaagcccagccgcagaagcacggaa
OVR01_0001_B03.b : GCCGCACTCGCCGCGTAAGTCCAGGGCCAAGgatcgaagcccagccgcagaagcacggaa
OVRM1_0032_F09.b : GCCGCACTCGCCGCGTAAGTCCAGGGCCAAGgatcgaagcccagccgcagaagcacggaa


20110601C-012346 : TCCTTTAACCTGCATCAGGCTGGGGATGGAACCCGCACCTCCGCAGCGACCCCAGCAGCT
                   ---------+---------+---------+---------+---------+---------+ 318
OVRT1_0052_G12.b : tcctttaacctgcatcaggctggggatggaacccgcacctccgcagcgaccccagcagct
SMG01_0070_E05.b : tcctttaacctgcatcaggctggggatggaacccgcacctccgcagcgaccccagcagct
UTR01_0083_D04.b : tcctttaacctgcatcaggctggggatggaacccgcacctccgcagcgaccccagcagct
OVR01_0001_B03.b : tcctttaacctgcatcaggctggggatggaacccgcacctccgcagcgaccccagcagct
OVRM1_0032_F09.b : tcctttaacctgcatcaggctggggatggaacccgcacctccgcagcgaccccagcagct


20110601C-012346 : GCAGTCGTATTTTTAACACAGTGCGCAAGAGCGGGAACTCCTTATTTTTGAATAAGGCCC
                   ---------+---------+---------+---------+---------+---------+ 378
OVRT1_0052_G12.b : gcagtcgtatttttaacacagtgcgcaagagcgggaactccTTATTTTTGAATAAGGCCC
SMG01_0070_E05.b : gcagtcgtatttttaacacagtgcgcaagagcgggaactccTTATTTTTGAATAAGGCCC
UTR01_0083_D04.b : gcagtcgtatttttaacacagtgcgcaagagcgggaactcTTTATTTTTGAATAAGGCCC
OVR01_0001_B03.b : gcagtcgtatttttaacacagtgcgcaagagcgggaactccTTATTTTTGAATAAGGCCC
OVRM1_0032_F09.b : gcagtcgtatttttaacacagtgcgcaagagcgggaactccTTATTTTTGAATAAGGCCC


20110601C-012346 : GAGAGCTCCTTATCTTTGAAGCCCAGCCAGGGGCTGTCCCTTTCAGAGATCTGGGCTAGA
                   ---------+---------+---------+---------+---------+---------+ 438
OVRT1_0052_G12.b : GAGAGCTCCTTATCTTTGAAGCCCAGCCAGGGGCTGTCCCTTTCAGAGATCTGGGCTAGA
SMG01_0070_E05.b : GAGAGCTCCTTATCTTTGAAGCCCAGCCAGGGGCTGTCCCTTTCAGAGATCTGGGCTAGA
UTR01_0083_D04.b : GAGAGCTCCTTATCTTTGAAGCCCAGCCAGGGGCTGTCCCTTTCAGAGATCTGGGCTAGA
OVR01_0001_B03.b : GAGAGCTCCTTATCTTTGAAGCCCAGCCAGGGGCTGTCCCTTTCAGAGATCTGGGCTAGA
OVRM1_0032_F09.b : GAGAGCTCCTTATCTTTGAAGCCCAGCCAGGGGCTGTCCCTTTCAGAGATCTGGGCTAGA


20110601C-012346 : CTGGAAAGATTCTGGAAGGCCTAAGGTTTGGAATTCTCTTGAAGAGCTGACAGGATGGCT
                   ---------+---------+---------+---------+---------+---------+ 498
OVRT1_0052_G12.b : CTGGAAAGATTCTGGAAGGCCTAAGGTTTGGAATTCTCTTGAAGAGCTGACAGGATGGCT
SMG01_0070_E05.b : CTGGAAAGATTCTGGAAGGCCTAAGGTTTGGAATTCTCTTGAAGAGCTGACAGGATGGCT
UTR01_0083_D04.b : CTGGAAAGATTCTGGAAGGCCTAAGGTTTGGAATTCTCTTGAAGAGCTGACAGGATGGCT
OVR01_0001_B03.b : CTGGAAAGATTCTGGAAGGCCTAAGGTTTGGAATTCTCTTGAAGAGCTGACAGGATGGCT
OVRM1_0032_F09.b : CTGGAAAGATTCTGGAAGGCCTAAGGTTTGGAATTCTCTTGAAGAGCTGACAGGATGGCT


20110601C-012346 : GTGGTGCCCATATAGTGGTTCCTGCCACTTGAACAGGCTGTGAGAAGTGGAGAAGATGCC
                   ---------+---------+---------+---------+---------+---------+ 558
OVRT1_0052_G12.b : GTGGTGCCCATATAGTGGTTCCTGCCACTTGAACAGGCTGTGAGAAGTGGAGAAGATGCC
SMG01_0070_E05.b : GTGGTGCCCATATAGTGGTTCCTGCCACTTGAACAGGCTGTGAGAAGTGGAGAAGATGCC
UTR01_0083_D04.b : GTAGTGCCCATATAGTGGTTCCTGCCACTTGAACAGGCTGTGAGAAGTGGAGAAGATGCC
OVR01_0001_B03.b : GTGGTGCCCATATAGTGGTTCCTGCCACTTGAACAGGCTGTGAGAAGTGGAGAAGATGCC
OVRM1_0032_F09.b : GTGGTGCCCATATAGTGGTTCCTGCCACTTGAACAGGCTGTGAGAAGTGGAGAAGATGCC


20110601C-012346 : TTCAGCTTGGGTTCTGTGGTGTTGCTTTTGTGAAATTTCAGAACTTTGCAGACACAAAAG
                   ---------+---------+---------+---------+---------+---------+ 618
OVRT1_0052_G12.b : TTCAGCTTGGGTTCTGTGGTGTTGCTTTTGTGAAATTTCAGAACTTTGCAGACACAAAAG
SMG01_0070_E05.b : TTCAGCTTGGGTTCTGTGGTGTTGCTTTTGTGAAATTTCAGAACTTTGCAGACACAAAAN
UTR01_0083_D04.b : TTCAGCTTGGGTTCTGAGGTGTTGCTTTTGTGACATTTCAGAACTTTGCAGACACAAAAG
OVR01_0001_B03.b : TTCAGCTTGGGTTCTGTGGTGTTGCTTTTGTGAAATTTCAGAACTTTGCAGACACAAAAG
OVRM1_0032_F09.b : TTCAGCTTGGGTTCTGTGGTGTTGCTTTTGTGAAATTTCAGAACTTTGCAGACACAAAAG


20110601C-012346 : GATGTCCTCTCTGGTGTTGGACAGATCTTGGGAGCTTCACATCTTTCCTGCATTAACACA
                   ---------+---------+---------+---------+---------+---------+ 678
OVRT1_0052_G12.b : GATGTCCTCTCTGGTGTTGGACAGATCTTGGGAGCTTCACATCTTTCCTGCATTAACACA
SMG01_0070_E05.b : GATGTCCTCTCTGGTGTTGGACAGATCTTGGGAGCTTCACATCTTTCCTGCATTAACACA
UTR01_0083_D04.b : GATGTCCTCTCTGGTGTTGGACAGATCTTGGAAGCTTCACATCTTTCCTGCATTAACACA
OVR01_0001_B03.b : GATGTCCTCTCTGGTGTTGGACAGATCTTGGGAGCTTCACATCTTTCCTGCATTAACACA
OVRM1_0032_F09.b : GATGTCCTCTCTGGTGTTGGACAGATCTTGGGAGCTTCACATCTTTCCTGCATTAACACA


20110601C-012346 : T*GGGAGCAGCTATCAACTCTTCCGAGCCAGGCGAACTGCCTAGAAATTT*GGGGACCCT
                   ---------+---------+---------+---------+---------+---------+ 736
OVRT1_0052_G12.b : T*GGGAGCAGCTATCAACTCTTCCGAGCCAGGCGAACTGCCTAGAAATTT*GGGGACCCT
SMG01_0070_E05.b : T*GGGAGCAGCTATCAACTCTTCCGAGCCAGGCGAACTGCCTAGAAATTGGGGGGACCTT
UTR01_0083_D04.b : T*GGGAGCAGCTATCAACTCTTCCGAGCCAGGCGAACTGCCTAGACATTT*GGGGACCCT
OVR01_0001_B03.b : T*GGGAGCAGCTATCAACTCTTCCGAGCCAGGCGAACTGCCTAGAAATTT*GGGGACCCT
OVRM1_0032_F09.b : TGGGGAGCAGCTATCAACTCTTCCGAGCCAGGCGAACTGCCTAGAAAATT*GGGGACCCT


20110601C-012346 : TAAATATCAATTA*GGTGGTCTTCACTTCTTTACTTGGTTTTAGCAAAAGGATTCCAATA
                   ---------+---------+---------+---------+---------+---------+ 795
OVRT1_0052_G12.b : T*AATATNCATTA*NGTGGTCTTCACTTCTTTACTTGGGTTTAGCAAAAGGAT*CCNATA
SMG01_0070_E05.b : NAAATATCAATTAAGGTGGTCTCCACTTCTTTACTTGGGTTTAGCAAAAAGATTCCAATA
UTR01_0083_D04.b : TAAATATCAATTA*GGTGGTCTTCACTTCTTTACTTGGTTTTAGCCAAAGGATTCCGGTA
OVR01_0001_B03.b : TAAATATCAATTA*GGTGGTCTTCACTTCTTTACTTGGTTTTAGCAAAAGGATTCCAATA
OVRM1_0032_F09.b : TTAATATtcaatagtggtcttcactttttatttggttttagcaaaggattctattaagta


20110601C-012346 : AAATATTTAAAAGTAAATGAAAAATAGATTGGTCTTAAGCCATTACAACCACCAGAGCCA
                   ---------+---------+---------+---------+---------+---------+ 855
OVRT1_0052_G12.b : AAATATTTTAAAGTAAATGAAAAATAGATTGGTCTTANNgccatagcaccaccagaagca
SMG01_0070_E05.b : AAAATATTTAAAGTAAATGAAAAATAGATGGGTCTTAAGCCATccgcaccaccaagagcc
UTR01_0083_D04.b : AAATATTTAA*AGTAAATGCAAAATAGATTGGTCTTAGGCCATAACAACCACCAGAGCCA
OVR01_0001_B03.b : AAATATTTAAAAGTAAATGAAAAATAgattggtcttaggccatcgcaaccaccagagcca
OVRM1_0032_F09.b : tttt                                                       


20110601C-012346 : CTGCAGTGACAACACCAGATCCTTGACCTGCTGCGCCTCAAGGGAAATCCTGATAGTTGA
                   ---------+---------+---------+---------+---------+---------+ 915
OVRT1_0052_G12.b : ctgcagtgacaacaccagatcctttgactgctgcgcctc*aggggaaTCCTGATAGNTGA
SMG01_0070_E05.b : cctggcgtggacaacaccagatccttgaactggttgccccccagggaaatcccggaaagt
UTR01_0083_D04.b : CTGCGATGACAACACCAGATCCTTGACCTGCTGCGCCTCAAGGGAAATCCTGATAATTAA
OVR01_0001_B03.b : ctgcagtgaccacaccagatccttgacctgctgcgcctcaagggaaatccTGATAGTTGA
OVRM1_0032_F09.b :                                                             


20110601C-012346 : GGTTTTTATGAGACTGTTACCACAGTTATCCCTTTTGGCTTTTGATGAATTGGGTGAAAA
                   ---------+---------+---------+---------+---------+---------+ 975
OVRT1_0052_G12.b : GG*TTTTATGAGACTGTTAacacagtatccatttggctttgatganttggtgaaaacata
SMG01_0070_E05.b : gaaagtttttagaaaaggttccaacagttacccttttgcttttgaggaattggggaaaaa
UTR01_0083_D04.b : GGTTTTTAGGAGACTGGTACAACCGATATCCC*TTTGGCTTTTGAAGAATTGGGTGAAAc
OVR01_0001_B03.b : GGTTTTTATGAGACTGTTACCACAGTTATCCCTTTTGGCTTTTGATGAGTTTGGTGGAAA
OVRM1_0032_F09.b :                                                             


20110601C-012346 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 975
OVRT1_0052_G12.b : aatggtccaaatatttggaagattcaattctggtgttgccagggcctaggagaaaaattg
SMG01_0070_E05.b : aaaaatgttcaaaatattttgaaaaattctattccgggtggttcccagggccaaagagaa
UTR01_0083_D04.b : cttaattgttcaaataaatccggaaaaatttcaattcctgggggttggcaggggctgaga
OVR01_0001_B03.b : acatagatttgttcaaaaatatttttgaaaaaatttctatttccgtgggggttgcccagg
OVRM1_0032_F09.b :                                                             


20110601C-012346 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 975
OVRT1_0052_G12.b : acctttttaagggtttaaatttcattgccacattaaaaaaagctggggggtaaaggggga
SMG01_0070_E05.b : aaaatgacctttttaaggggttaaaattccttccccacacaaaaaaaagcggggggtaaa
UTR01_0083_D04.b : agaaaaaatgaccgcttatttaggggtttcagtttgcc                     
OVR01_0001_B03.b : ggccttaaggaaggaaaaaaattgaacaagttatttaatgggggttttaaaaagtttttc
OVRM1_0032_F09.b :                                                             


20110601C-012346 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 975
OVRT1_0052_G12.b : atcccaaggttaaaaggtccccggaattttttcttaaggggaaaaggggaattttttttt
SMG01_0070_E05.b : gggggtttccccaggtttaagaggccccccggatttttttctataggaaaaaagggattt
UTR01_0083_D04.b :                                                             
OVR01_0001_B03.b : agttggccccccccaatg                                         
OVRM1_0032_F09.b :                                                             


20110601C-012346 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 975
OVRT1_0052_G12.b : tttccccctaaaaagggaaaaaaaaaaaaaaaaaaggccttgtttccattgggggcggcg
SMG01_0070_E05.b : tttttttttctcccccaaaaaggggggaaaaaaaanannnnnnanaaaaaaaaaaaaaaa
UTR01_0083_D04.b :                                                             
OVR01_0001_B03.b :                                                             
OVRM1_0032_F09.b :                                                             


20110601C-012346 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 975
OVRT1_0052_G12.b : caaaat                                                     
SMG01_0070_E05.b : nnnnnnnaanncaannnaanngggaggaagggggtgtgggggcggcttaaatttgggggg
UTR01_0083_D04.b :                                                             
OVR01_0001_B03.b :                                                             
OVRM1_0032_F09.b :                                                             


20110601C-012346 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 975
OVRT1_0052_G12.b :                                                             
SMG01_0070_E05.b : aaaaaaccccttttaaagaccacagaataaaaaagcggctttccctcggagagagggttt
UTR01_0083_D04.b :                                                             
OVR01_0001_B03.b :                                                             
OVRM1_0032_F09.b :                                                             


20110601C-012346 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 975
OVRT1_0052_G12.b :                                                             
SMG01_0070_E05.b : gtaaatcggggtagaaacaaaaaaaaaaaaaaaaaagcgggggacaaaaaaaaatcatat
UTR01_0083_D04.b :                                                             
OVR01_0001_B03.b :                                                             
OVRM1_0032_F09.b :