Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-013927

Sequence: [FASTA format sequence] GGCCTCGCCA TGCTGCGCGT GCTGGGCGGC CTGGGTGCGC GGCCTGCGGG CCGGCTCCCG GCCCCGCTTC TGCTCCCCAC GCGCGGCCGC AAGACCCGCC ACGACCCGCC GGCCAAGTCC AAAGCCGGGC GCGTGGCGAC TCCGCCCGCG GTGGATCCTA CGGAGTTCTT CGTGCTGACC GAGCGTTACC GCCAGTATCG CCAGACGGTG CGCGCGCTCA GGCTGGAGTT CATGTCCGAG GTGCGCAAGA AGCTGCATGA GGCCCGGGCC GGGGTCCAGG CAGAGCGCAA GGCGCAGGAG GACGCGGCTG AGCATCGCGA GCTGATGGCT TGGAACCAGG CGGAGAACCA GCGGTTGCAC GAGCTGCGGC TGGCCAGGCT GCGGCAGGAG GCCCTCGAGC AGGAGCGGCG GCAGGCCGAG GAGGCTGTCC TGCAGGCCCG AGAGGCGCAG GCCTGGGCGC AGCTCAAGGA GCAGGAAGTG CTGCAACTGC AGGAGGAGGC AAAAACCTTC ATCACTCGAG AGAACCTGGA GGCACGGGTG GAAGAAGCAT TGGACTCCCC AAAGAGCTAC AACTGGGCCA TCACCAGAGA GGGGCTGGTT GTCAGGCCCC AGCAAAAGGG CTCATAAGGA CCCAATAAGG ACAGTGCCCA CCCAGGAACC ATTGTGTGTT GAGGGGCGGA GGGATTGGAG TGTCGTACCT GATCTGGAAT AAAGCAGTTG GTGTTTCTTA TGAAGGAGGA GGCTCTACGG AATCCACTGC AGCCCTCACT TTGGGGCCTT AACACCCACC CAATTGGTTA AAAATTCCCC TCCACACAGT GCCCCTGTTC CATACCCATG TATGAATCTC CGCCCAGCAC CAGACC

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
MRPS26 28S ribosomal protein S26, mitochondrial precursor [Homo sapiens]. 194 9e-50 O

		Locus	Definition	Score	E value	FL
		MRPS26	28S ribosomal protein S26, mitochondrial precursor [Homo sapiens].	194	9e-50	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Mrps26 28S ribosomal protein S26, mitochondrial precursor [Mus musculus]. 197 7e-51 O

		Locus	Definition	Score	E value	FL
		Mrps26	28S ribosomal protein S26, mitochondrial precursor [Mus musculus].	197	7e-51	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC477175 PREDICTED: similar to mitochondrial ribosomal protein S26 [Canis familiaris]. 213 2e-55 O

		Locus	Definition	Score	E value	FL
		LOC477175	PREDICTED: similar to mitochondrial ribosomal protein S26 [Canis familiaris].	213	2e-55	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
MRPS26 28S ribosomal protein S26, mitochondrial precursor [Bos taurus]. 218 7e-57 O

		Locus	Definition	Score	E value	FL
		MRPS26	28S ribosomal protein S26, mitochondrial precursor [Bos taurus].	218	7e-57	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
MRPS26 PREDICTED: 28S ribosomal protein S26, mitochondrial [Sus scrofa]. 244 4e-65 O

		Locus	Definition	Score	E value	FL
		MRPS26	PREDICTED: 28S ribosomal protein S26, mitochondrial [Sus scrofa].	244	4e-65	O

Assembly Members: 5 TOP

Library Plate Loc. Read Name Accession Full Seq.

ADR01 0055 A06 ADR01_0055_A06.b DB786359
BMWN1 0008 C07 BMWN1_0008_C07.b HX206074
HTMT1 0102 E11 HTMT1_0102_E11.b HX223352
HTMT1 0104 B11 HTMT1_0104_B11.b HX223473
LNG01 0002 E09 LNG01_0002_E09.b BP437598 AK231624

SNPs: 2 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
114 C 3 0 0.600 W S GCC/A
T 2 0 0.400 GCT/A
549 A 3 0 0.600 W S GCA/A
G 2 0 0.400 GCG/A

Alignment: TOP

20110601C-013927 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
BMWN1_0008_C07.b :         nnnaaagatggtacgacgcagtagtattaaxxxxxxxxxxxxxxxxxxxxxx
ADR01_0055_A06.b :                             ggnnnnaagatgaacaxxxxxxxxxxxxxxxx
LNG01_0002_E09.b : cttttggttgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
HTMT1_0104_B11.b :                                ttttggacgagaagacgxxxxxxxxxxxx
HTMT1_0102_E11.b :                                                      ttttccg


20110601C-013927 : .........................GGCCTCGCCATGCTGCGCGTGCTGGGCGGCCTGGG
                   ---------+---------+---------+---------+---------+---------+ 35
BMWN1_0008_C07.b : xxxxxxxxxxxxxxxxccattaggaGGCCTCGCCATGCTGCGCGTGCTGGGCGGCCTGGG
ADR01_0055_A06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCGCCATGCTGCGCGTGCTGGGCGGCCTGGG
LNG01_0002_E09.b : xxxxxxxxxxxxxxxxxxxxxxxxxggcCTCGCCATGCTGCGCGTGCTGGGCGGCCTGGG
HTMT1_0104_B11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgGCCATGCTGCGCGTGCTGGGCGGCCTGGG
HTMT1_0102_E11.b : agattagacgccgtagtatttatxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGG


20110601C-013927 : TGCGCGGCCTGCGGGCCGGCTCCCGGCCCCGCTTCTGCTCCCCACGCGCGGCCGCAAGAC
                   ---------+---------+---------+---------+---------+---------+ 95
BMWN1_0008_C07.b : TGCGCGGCCTGCGGGCCGGCTCCCGGCCCCGCTTCTGCTCCCCACGCGCGGCCGCAAGAC
ADR01_0055_A06.b : TGCGCGGCCTGCGGGCCGGCTCCCGGCCCCGCTTCTGCTCCCCACGCGCGGCCGCAAGAC
LNG01_0002_E09.b : TGCGCGGCCTGCGGGCCGGCTCCCGGCCCCGCTTCTGCTCCCCACGCGCGGCCGCAAGAC
HTMT1_0104_B11.b : TGCGCGGCCTGCGGGCCGGCTCCCGGCCCCGCTTCTGCTCCCCACGCGCGGCCGCAAGAC
HTMT1_0102_E11.b : TGCGCGGCCTGCGGGCCGGCTCCCGGCCCCGCTTCTGCTCCCCACGCGCGGCCGCAAGAC


20110601C-013927 : CCGCCACGACCCGCCGGCCAAGTCCAAAGCCGGGCGCGTGGCGACTCCGCCCGCGGTGGA
                   ---------+---------+---------+---------+---------+---------+ 155
BMWN1_0008_C07.b : CCGCCACGACCCGCCGGCTAAGTCCAAAGCCGGGCGCGTGGCGACTCCGCCCGCGGTGGA
ADR01_0055_A06.b : CCGCCACGACCCGCCGGCCAAGTCCAAAGCCGGGCGCGTGGCGACTCCGCCCGCGGTGGA
LNG01_0002_E09.b : CCGCCACGACCCGCCGGCTAAGTCCAAAGCCGGGCGCGTGGCGACTCCGCCCGCGGTGGA
HTMT1_0104_B11.b : CCGCCACGACCCGCCGGCCAAGTCCAAAGCCGGGCGCGTGGCGACTCCGCCCGCGGTGGA
HTMT1_0102_E11.b : CCGCCACGACCCGCCGGCCAAGTCCAAAGCCGGGCGCGTGGCGACTCCGCCCGCGGTGGA


20110601C-013927 : TCCTACGGAGTTCTTCGTGCTGACCGAGCGTTACCGCCAGTATCGCCAGACGGTGCGCGC
                   ---------+---------+---------+---------+---------+---------+ 215
BMWN1_0008_C07.b : TCCTACGGAGTTCTTCGTGCTGACCGAGCGTTACCGCCAGTATCGCCAGACGGTGCGCGC
ADR01_0055_A06.b : TCCTACGGAGTTCTTCGTGCTGACCGAGCGTTACCGCCAGTATCGCCAGACGGTGCGCGC
LNG01_0002_E09.b : TCCTACGGAGTTCTTCGTGCTGACCGAGCGTTACCGCCAGTATCGCCAGACGGTGCGCGC
HTMT1_0104_B11.b : TCCTACGGAGTTCTTCGTGCTGACCGAGCGTTACCGCCAGTATCGCCAGACGGTGCGCGC
HTMT1_0102_E11.b : TCCTACGGAGTTCTTCGTGCTGACCGAGCGTTACCGCCAGTATCGCCAGACGGTGCGCGC


20110601C-013927 : GCTCAGGCTGGAGTTCATGTCCGAGGTGCGCAAGAAGCTGCATGAGGCCCGGGCCGGGGT
                   ---------+---------+---------+---------+---------+---------+ 275
BMWN1_0008_C07.b : GCTCAGGCTGGAGTTCATGTCCGAGGTGCGCAAGAAGCTGCATGAGGCCCGGGCCGGGGT
ADR01_0055_A06.b : GCTCAGGCTGGAGTTCATGTCCGAGGTGCGCAAGAAGCTGCATGAGGCCCGGGCCGGGGT
LNG01_0002_E09.b : GCTCAGGCTGGAGTTCATGTCCGAGGTGCGCAAGAAGCTGCATGAGGCCCGGGCCGGGGT
HTMT1_0104_B11.b : GCTCAGGCTGGAGTTCATGTCCGAGGTGCGCAAGAAGCTGCATGAGGCCCGGGCCGGGGT
HTMT1_0102_E11.b : GCTCAGGCTGGAGTTCATGTCCGAGGTGCGCAAGAAGCTGCATGAGGCCCGGGCCGGGGT


20110601C-013927 : CCAGGCAGAGCGCAAGGCGCAGGAGGACGCGGCTGAGCATCGCGAGCTGATGGCTTGGAA
                   ---------+---------+---------+---------+---------+---------+ 335
BMWN1_0008_C07.b : CCAGGCAGAGCGCAAGGCGCAGGAGGACGCGGCTGAGCATCGCGAGCTGATGGCTTGGAA
ADR01_0055_A06.b : CCAGGCAGAGCGCAAGGCGCAGGAGGACGCGGCTGAGCATCGCGAGCTGATGGCTTGGAA
LNG01_0002_E09.b : CCAGGCAGAGCGCAAGGCGCAGGAGGACGCGGCTGAGCATCGCGAGCTGATGGCTTGGAA
HTMT1_0104_B11.b : CCAGGCAGAGCGCAAGGCGCAGGAGGACGCGGCTGAGCATCGCGAGCTGATGGCTTGGAA
HTMT1_0102_E11.b : CCAGGCAGAGCGCAAGGCGCAGGAGGACGCGGCTGAGCATCGCGAGCTGATGGCTTGGAA


20110601C-013927 : CCAGGCGGAGAACCAGCGGTTGCACGAGCTGCGGCTGGCCAGGCTGCGGCAGGAGGCCCT
                   ---------+---------+---------+---------+---------+---------+ 395
BMWN1_0008_C07.b : CCAGGCGGAGAACCAGCGGTTGCACGAGCTGCGGCTGGCCAGGCTGCGGCAGGAGGCCCT
ADR01_0055_A06.b : CCAGGCGGAGAACCAGCGGTTGCACGAGCTGCGGCTGGCCAGGCTGCGGCAGGAGGCCCT
LNG01_0002_E09.b : CCAGGCGGAGAACCAGCGGTTGCACGAGCTGCGGCTGGCCAGGCTGCGGCAGGAGGCCCT
HTMT1_0104_B11.b : CCAGGCGGAGAACCAGCGGTTGCACGAGCTGCGGCTGGCCAGGCTGCGGCAGGAGGCCCT
HTMT1_0102_E11.b : CCAGGCGGAGAACCAGCGGTTGCACGAGCTGCGGCTGGCCAGGCTGCGGCAGGAGGCCCT


20110601C-013927 : CGAGCAGGAGCGGCGGCAGGCCGAGGAGGCTGTCCTGCAGGCCCGAGAGGCGCAGGCCTG
                   ---------+---------+---------+---------+---------+---------+ 455
BMWN1_0008_C07.b : CGAGCAGGAGCGGCGGCAGGCCGAGGAGGCTGTCCTGCAGGCCCGAGAGGCGCAGGCCTG
ADR01_0055_A06.b : CGAGCAGGAGCGGCGGCAGGCCGAGGAGGCTGTCCTGCAGGCCCGAGAGGCGCAGGCCTG
LNG01_0002_E09.b : CGAGCAGGAGCGGCGGCAGGCCGAGGAGGCTGTCCTGCAGGCCCGAGAGGCGCAGGCCTG
HTMT1_0104_B11.b : CGAGCAGGAGCGGCGGCAGGCCGAGGAGGCTGTCCTGCAGGCCCGAGAGGCGCAGGCCTG
HTMT1_0102_E11.b : CGAGCAGGAGCGGCGGCAGGCCGAGGAGGCTGTCCTGCAGGCCCGAGAGGCGCAGGCCTG


20110601C-013927 : GGCGCAGCTCAAGGAGCAGGAAGTGCTGCAACTGCAGGAGGAGGCAAAAACCTTCATCAC
                   ---------+---------+---------+---------+---------+---------+ 515
BMWN1_0008_C07.b : GGCGCAGCTCAAGGAGCAGGAAGTGCTGCAACTGCAGGAGGAGGCAAAAACCTTCATCAC
ADR01_0055_A06.b : GGCGCAGCTCAAGGAGCAGGAAGTGCTGCAACTGCAGGAGGAGGCAAAAACCTTCATCAC
LNG01_0002_E09.b : GGCGCAGCTCAAGGAGCAGGAAGTGCTGCAACTGCAGGAGGAGGCAAAAACCTTCATCAC
HTMT1_0104_B11.b : GGCGCAGCTCAAGGAGCAGGAAGTGCTGCAACTGCAGGAGGAGGCAAAAACCTTCATCAC
HTMT1_0102_E11.b : GGCGCAGCTCAAGGAGCAGGAAGTGCTGCAACTGCAGGAGGAGGCAAAAACCTTCATCAC


20110601C-013927 : TCGAGAGAACCTGGAGGCACGGGTGGAAGAAGCATTGGACTCCCCAAAGAGCTACAACTG
                   ---------+---------+---------+---------+---------+---------+ 575
BMWN1_0008_C07.b : TCGAGAGAACCTGGAGGCACGGGTGGAAGAAGCGTTGGACTCCCCAAAGAGCTACAACTG
ADR01_0055_A06.b : TCGAGAGAACCTGGAGGCACGGGTGGAAGAAGCATTGGACTCCCCAAAGAGCTACAACTG
LNG01_0002_E09.b : TCGAGAGAACCTGGAGGCACGGGTGGAAGAAGCGTTGGACTCCCCAAAGAGCTACAACTG
HTMT1_0104_B11.b : TCGAGAGAACCTGGAGGCACGGGTGGAAGAAGCATTGGACTCCCCAAAGAGCTACAACTG
HTMT1_0102_E11.b : TCGAGAGAACCTGGAGGCACGGGTGGAAGAAGCATTGGACTCCCCAAAGAGCTACAACTG


20110601C-013927 : GGCCATCACCAGAGAGGGGCTGGTTGTCAGGCCCCAGCAAAAGGGCTCATAAGGACCCAA
                   ---------+---------+---------+---------+---------+---------+ 635
BMWN1_0008_C07.b : GGCCATCACCAGAGAGGGGCTGGTTGTCAGGCCCCAGCAAAAGGGCTCATAAGGACCCAA
ADR01_0055_A06.b : GGCCATCACCAGAGAGGGGCTGGTTGTCAGGCCCCAGCAAAAGGGCTCATAAGGACCCAA
LNG01_0002_E09.b : GGCCATCACCAGAGAGGGGCTGGTTGTCAGGCCCCAGCAAAAGGGCTCATAAGGACCCAA
HTMT1_0104_B11.b : GGCCATCACCAGAGAGGGGCTGGTTGTCAGGCCCCAGCAAAAGGGCTCATAAGGACCCAA
HTMT1_0102_E11.b : GGCCATCACCAGAGAGGGGCTGGTTGTCAGGCCCCAGCAAAAGGGCTCATAAGGACCCAA


20110601C-013927 : TAAGGACAGTGCCCACCCAGGAACCATTGTGTGTTGAGGGGCGGAGGGATTGGAGTGTCG
                   ---------+---------+---------+---------+---------+---------+ 695
BMWN1_0008_C07.b : TAAGGACAGTGCCCACCCAGGAACCATTGTGTGTTGAGGGGCGGAGGGATTGGAGTGTCG
ADR01_0055_A06.b : TAAGGACAGTGCCCACCCAGGAACCATTGTGTGTTGAGGGGCGGAGGGATTGGAGTGTCG
LNG01_0002_E09.b : TAAGGACAGTGCCCACCCAGGAACCATTGTGTGTTGAGGGGCGGAGGGATTGGAGTGTCG
HTMT1_0104_B11.b : TAAGGACAGTGCCCACCCAGGAACCATTGTGTGTTGAGGGGCGGAGGGATTGGAGTGTCN
HTMT1_0102_E11.b : TAAGGACAGTGCCCACCCAGGAACCATTGTGTGTTGAGGGGCGGAGGGATTGGAGTGTCN


20110601C-013927 : TACCTGATCTGGAATAAAGCAGTTGGTGTTTCTTATGAAGGAGGAGGCTCTACGGAATCC
                   ---------+---------+---------+---------+---------+---------+ 755
BMWN1_0008_C07.b : TACCTGATCTGGAATAAAGCAGTTGGTGTTTCTTAaaaaaaaaaaaaa           
ADR01_0055_A06.b : TACCTGATCTGGAATAAAGCAGTTGGTGTTTCTTATGaaaaaaaaaaaaaaaaaaaaaaa
LNG01_0002_E09.b : TACCTGATCTGGAATAAAGCAGTTGGTGTTTCTTATGAAGGAGGAGGCTCTACGGAATCC
HTMT1_0104_B11.b : TACCTGATCTGGAATAAAGCAGTTGGTGTTTCTTAaa                      
HTMT1_0102_E11.b : TACCTGATCTGGAATAAAGCAGTTGGTGTTTCTTATGAAaaaaat              


20110601C-013927 : ACTGCAGCCCTCACTTTGGGGCCTTAACACCCACCCAATTGGTTAAAAATTCCCCTCCAC
                   ---------+---------+---------+---------+---------+---------+ 815
BMWN1_0008_C07.b :                                                             
ADR01_0055_A06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LNG01_0002_E09.b : ACTGCAGCCCTCACTTTGGGGCCTTAACACCCACCCAATTGGTTAAAAATTCCCCTCCAC
HTMT1_0104_B11.b :                                                             
HTMT1_0102_E11.b :                                                             


20110601C-013927 : ACAGTGCCCCTGTTCCATACCCATGTATGAATCTCCGCCCAGCACCAGACC.........
                   ---------+---------+---------+---------+---------+---------+ 866
BMWN1_0008_C07.b :                                                             
ADR01_0055_A06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LNG01_0002_E09.b : ACAGTGCCCCTGTTCCATACCCATGTATGAATCTCCGCCCAGCACCAGACCcttagaagt
HTMT1_0104_B11.b :                                                             
HTMT1_0102_E11.b :                                                             


20110601C-013927 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 866
BMWN1_0008_C07.b :                                                             
ADR01_0055_A06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LNG01_0002_E09.b : tttccctccttacagaaggagcaggtttaggccataattccccttaagccacccagggtc
HTMT1_0104_B11.b :                                                             
HTMT1_0102_E11.b :                                                             


20110601C-013927 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 866
BMWN1_0008_C07.b :                                                             
ADR01_0055_A06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LNG01_0002_E09.b : tcctcccgaatttccttccagggacagtggttgggcaaacctggcagtcccttggggcca
HTMT1_0104_B11.b :                                                             
HTMT1_0102_E11.b :                                                             


20110601C-013927 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 866
BMWN1_0008_C07.b :                                                             
ADR01_0055_A06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LNG01_0002_E09.b : aaatctgggccccattactttctttttttttaaaataaaaggtttatttgggcccaaaaa
HTMT1_0104_B11.b :                                                             
HTMT1_0102_E11.b :                                                             


20110601C-013927 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 866
BMWN1_0008_C07.b :                                                             
ADR01_0055_A06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxcccgggcccggggatccaatgtt
LNG01_0002_E09.b : aaaaaaaaaaaataaaaagggccccacatttggggctcctcggccctggcgaggggctcc
HTMT1_0104_B11.b :                                                             
HTMT1_0102_E11.b :                                                             


20110601C-013927 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 866
BMWN1_0008_C07.b :                                                             
ADR01_0055_A06.b : tgggatttaaattccggcccagggtcatttgggcccccaaccccaggctgtttgattaat
LNG01_0002_E09.b : cggggcccccccctctttaaaaaaaaatttccccccccccgggagggggggccccccaaa
HTMT1_0104_B11.b :                                                             
HTMT1_0102_E11.b :                                                             


20110601C-013927 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 866
BMWN1_0008_C07.b :                                                             
ADR01_0055_A06.b : atcccaaccctttttagagtttctggtttaaaaccccccaccccccgaccaaaaaaaaaa
LNG01_0002_E09.b : aacgctttttatcccccccctaaaaaaccccaccacaccccttttttttttttctttt 
HTMT1_0104_B11.b :                                                             
HTMT1_0102_E11.b :                                                             


20110601C-013927 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 866
BMWN1_0008_C07.b :                                                             
ADR01_0055_A06.b : agaattgttgttactgttttggcct                                  
LNG01_0002_E09.b :                                                             
HTMT1_0104_B11.b :                                                             
HTMT1_0102_E11.b :