[Help]

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-014077

Length: 1,157

Sequence:  [FASTA format sequence]
CTTTGCTTTC TTCCTTTACC CGCCCCCCCG CAACGCACAC ACCAACCAAG ACTTATTTGG
TTAAAACACC AGAGGGCCAT GGTCCTCCAT GGGGGGCTGG TCCTGGGACT CCACATCTTG
ATGACCCTCC TGAGTCCCCA GAAAGCTGGG GCCATCAAGG CTGACCACAT GGGCTCCTAT
GGACCAGCCT TCTACCAGTC CTATGACGGC TCGGGTCAGT TCACCTACGA TTTCGATGGG
GAGCAGCTCT TCTCCGTGGA CCTGAAGAAG AGGGAGGCTG TGTGGCGTCT GCCTGAATTC
AGCAACTTCG CCGACTTTGA CCCGCAGAAT GGGCTGAGAG GCATTGCACT GATCAGAGCC
CATCTGGATG TCTTGGTGGA GCGCTCCAAC CATACCAGAG CCACCAATGT GCCTCCAAGG
GTGACCGTCC TCCCCAAGTC CCCTGTGGCG CTGGGCCAGC CCAACGTCCT CATCTGCATC
GTGGACAACA TCTTCCCCCC TGTCATCAAT ATCACTTGGC TGCACAACGG CCAGACGGTC
ACCGAGGGGG TGACCCAGAC CAGCTTCTAT GCCCAGCCCG ACCACTCGTT CCGGAAGTTC
CACTACCTGA CCTTCGTGCC CTCGGCAGGC GACTTCTATG ACTGCAAAGT GGAGCACTGG
GGCCTGGACG AGCCGCTCTT TACGCACTGG GAGCCCCAGG TGACTATGCC GCTGCCAGAC
ACCACAGAGA CCCTGGTCTG TGCCCTCGGC CTGGCGCTTG GCCTGGTGGG CTTCCTCGTG
GGCGTCACCC TTATCATCAC AGGCAGACGC CGGTCCAGCT CCCCCAGGTA ATGATCCTTC
TGAGAGGCTG GGATGTGAGA GAGACCCTCC GCCCCAGCTT CCTCGCAAGT TTCTGACAGC
CCGGAATACT TGGCTCCACC ATCCACCAAG TGCATCCCGG CAGAGCTGCC TTTCAGTGGC
ATCAACCTGT AACCTAAACC CCTCCCTCTT TTTTTTGGCC CCAGTATCTC TGGCAGGAAC
TTCTGGGGGG AACACCAACT AACCTCCCCT CCCCCCCTCC AAAAAGCCCC TCCTTGCCCC
CTTCTAAAAG CCCCCGGCTT ACCCCCAAAA AAAATTTTAA AACCCGTGAA AAAAAAAAAA
AAAAAAAAAA AAAGGCC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		HLA-DOA	HLA class II histocompatibility antigen, DO alpha chain precursor [Homo sapiens].	347	2e-95	O
		HLA-DQA1	HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens].	261	1e-69	O
		LOC100509457	PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 1 [Homo sapiens].	259	3e-69	O
		LOC100507718	PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 2 [Homo sapiens].	259	4e-69	O
		LOC100509457	PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 3 [Homo sapiens].	259	3e-69	O
		LOC100507718	PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 1 [Homo sapiens].	259	4e-69	O
		HLA-DQA2	HLA class II histocompatibility antigen, DQ alpha 2 chain precursor [Homo sapiens].	256	2e-68	O
		LOC100507718	PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 3 [Homo sapiens].	254	1e-67	O
		LOC100509457	PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 2 [Homo sapiens].	254	8e-68	O
		HLA-DPA1	HLA class II histocompatibility antigen, DP alpha 1 chain precursor [Homo sapiens].	254	1e-67	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		H2-Oa	histocompatibility 2, O region alpha locus [Mus musculus].	326	2e-89	O
		H2-Aa	histocompatibility 2, class II antigen A, alpha precursor [Mus musculus].	257	1e-68	O
		H2-Ea-ps	histocompatibility 2, class II antigen E alpha precursor [Mus musculus].	237	1e-62	O
		H2-DMa	class II histocompatibility antigen, M alpha chain precursor [Mus musculus].	88.2	1e-17	O
		H2-Ob	histocompatibility 2, O region beta locus [Mus musculus].	78.6	9e-15	O
		H2-Eb1	H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus].	72	8e-13	O
		H2-DMb2	histocompatibility 2, class II, locus Mb2 [Mus musculus].	68.6	9e-12	O
		H2-Eb2	histocompatibility 2, class II antigen E beta2 [Mus musculus].	68.2	1e-11	O
		H2-Ab1	histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus].	67.4	2e-11	O
		LOC100505003	PREDICTED: class II histocompatibility antigen, M beta 1 chain-like [Mus musculus].	67	3e-11	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC474869	PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris].	313	2e-85	O
		HLA-DQA1	major histocompatibility complex, class II, DQ alpha [Canis lupus familiaris].	273	3e-73	O
		DLA-DRA	MHC class II DR alpha chain [Canis lupus familiaris].	252	5e-67	O
		LOC474869	PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 10 [Canis familiaris].	161	1e-39	O
		HLA-DMA	major histocompatibility complex, class II, DM alpha [Canis lupus familiaris].	74.7	2e-13	O
		HLA-DQB1	major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris].	74.3	2e-13	O
		HLA-DRB1	DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris].	73.6	3e-13	O
		HLA-DOB	major histocompatibility complex, class II, DO beta [Canis lupus familiaris].	68.9	8e-12	O
		LOC478284	PREDICTED: similar to beta-2-microglobulin precursor isoform 3 [Canis familiaris].	62	1e-09	O
		LOC478284	PREDICTED: similar to beta-2-microglobulin precursor isoform 2 [Canis familiaris].	62	1e-09	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		HLA-DOA	HLA class II histocompatibility antigen, DO alpha chain [Bos taurus].	351	8e-97	O
		LOC525727	PREDICTED: MHC class II antigen-like [Bos taurus].	351	8e-97	O
		LOC525727	PREDICTED: MHC class II antigen-like [Bos taurus].	333	1e-91	O
		HLA-DQA1	major histocompatibility complex, class II, DQ alpha 5 [Bos taurus].	260	2e-69	O
		BOLA-DYA	major histocompatibility complex, class II, DY alpha [Bos taurus].	258	7e-69	O
		BOLA-DQA2	major histocompatibility complex, class II, DQ alpha 2 [Bos taurus].	248	6e-66	O
		LOC100336394	PREDICTED: BOLA-DQA2 protein-like [Bos taurus].	246	4e-65	O
		BOLA-DQA1	major histocompatibility complex, class II, DQ alpha, type 1 [Bos taurus].	244	1e-64	O
		BOLA-DRA	major histocompatibility complex, class II, DR alpha [Bos taurus].	236	2e-62	O
		BOLA-DQA3	major histocompatibility complex, class II, DQ alpha, type 3 [Bos taurus].	232	4e-61	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		SLA	src-like-adapter [Sus scrofa].	432	e-121	O
		SLA-DQA1	SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor [Sus scrofa].	260	1e-69	O
		SLA-DQA	SLA class II histocompatibility antigen, DQ haplotype C alpha chain precursor [Sus scrofa].	250	9e-67	O
		SLA-DRA	MHC class II DR-alpha [Sus scrofa].	244	5e-65	O
		SLA-DMA	SLA-DM alpha chain [Sus scrofa].	91.7	7e-19	O
		SLA-DOA	major histocompatibility complex, class II, DO alpha [Sus scrofa].	91.7	7e-19	O
		LOC100513292	PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa].	73.2	3e-13	O
		SLA-DOB	MHC class II, DO beta [Sus scrofa].	72.8	3e-13	O
		LOC100520439	PREDICTED: HLA class II histocompatibility antigen, DO beta chain-like [Sus scrofa].	72.8	3e-13	O
		LOC100519552	PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa].	72.4	4e-13	O

Alignment:      TOP

20110601C-014077 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LNG01_0001_G02.b : ggcaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SMG01_0047_B09.b :                                  tttcagannggataaagcagcggtaxx
ITT01_0006_H09.b :                                      nnnaagatgaacaxxxxxxxxxx
MLN01_0101_C08.b :              nnnactaggactatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CBLT1_0097_F03.b :                                      ttccgccatgacgaxxxxxxxxx
MLN01_0104_D02.b :                                        nnnngctaggaatatgacxxx
ITT01_0008_G11.b :                                                             
UTR01_0066_E05.b :                                                  cctttttggta
ILNT1_0085_A12.b :                                                             


20110601C-014077 : ....................CTTTGCTTTCTTCCTTTACCCGCCCCCCCGCAACGCACAC
                   ---------+---------+---------+---------+---------+---------+ 40
LNG01_0001_G02.b : xxxxxxxxxxxxxxxxxxxxCTTTGCTTTCTTCCTTTACCCGCCCCCCCGCAACGCACAC
SMG01_0047_B09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTTACCCGCCCCCCCGCAACGCACAC
ITT01_0006_H09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTTACCCGCCCCCCCGCAACGCACAC
MLN01_0101_C08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtcCTTTACCCGCCCCCCCGCAACGCACAC
CBLT1_0097_F03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACCCGCCCCCCCGCAACGCACAC
MLN01_0104_D02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtggACAC
ITT01_0008_G11.b :  nnnaagatgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxC
UTR01_0066_E05.b : acxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ILNT1_0085_A12.b :                           nnnnccgctagtacacgxxxxxxxxxxxxxxxxx


20110601C-014077 : ACCAACCAAGACTTATTTGGTTAAAACACCAGAGGGCCATGGTCCTCCATGGGGGGCTGG
                   ---------+---------+---------+---------+---------+---------+ 100
LNG01_0001_G02.b : ACCAACCAAGACTTATTTGGTTAAAACACCAGAGGGCCATGGTCCTCCATGGGGGGCTGG
SMG01_0047_B09.b : ACCAACCAAGACTTATTTGGTTAAAACACCAGAGGGCCATGGTCCTCCATGGGGGGCTGG
ITT01_0006_H09.b : ACCAACCAAGACTTATTTGGTTAAAACACCAGAGGGCCATGGTCCTCCATGGGGGGCTGG
MLN01_0101_C08.b : ACCAACCAAGACTTATTTGGTTAAAACACCAGAGGGCCATGGTCCTCCATGGGGGGCTGG
CBLT1_0097_F03.b : ACCAACCAAGACTTATTTGGTTAAAACACCAGAGGGCCATGGTCCTCCATGGGGGGCTGG
MLN01_0104_D02.b : ACCAACCAAGACTTACTTGGTTAAAACACCAGAGGGCCATGGTCCTCCATGGGGGGCTGG
ITT01_0008_G11.b : ACCAACCAAGACTTATTTGGTTAAAACACCAGAGGGCCATGGTCCTCCATGGGGGGCTGG
UTR01_0066_E05.b : xxxxxxxxxxxxxxxTTTGGTTAAAACACCAGAGGGCCATGGTCCTCCATGGGGGGCTGG
ILNT1_0085_A12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxgACCAGAGGGCCATGGTCCTCCATGGGGGGCTGG


20110601C-014077 : TCCTGGGACTCCACATCTTGATGACCCTCCTGAGTCCCCAGAAAGCTGGGGCCATCAAGG
                   ---------+---------+---------+---------+---------+---------+ 160
LNG01_0001_G02.b : TCCTGGGACTCCACATCTTGATGACCCTCCTGAGTCCCCAGAAAGCTGGGGCCATCAAGG
SMG01_0047_B09.b : TCCTGGGACTCCACATCTTGATGACCCTCCTGAGTCCCCAGAAAGCTGGGGCCATCAAGG
ITT01_0006_H09.b : TCCCGGGACTCCACATCTTGATGACCCTCCTGAGTCCCCAGAAAGCTGGGGCCATCAAGG
MLN01_0101_C08.b : TCCTGGGACTCCACATCTTGATGACCCTCCTGAGTCCCCAGAAAGCTGGGGCCATCAAGG
CBLT1_0097_F03.b : TCCTGGGACTCCACATCTTGATGACCCTCCTGAGTCCCCAGAAAGCTGGGGCCATCAAGG
MLN01_0104_D02.b : TCCTGGGACTCCACATCTTGATGACCCTCCTGAGTCCCCAGAAAGCTGGGGCCATCAAGG
ITT01_0008_G11.b : TCCTGGGACTCCACATCTTGATGACCCTCCTGAGTCCCCAGAAAGCTGGGGCCATCAAGG
UTR01_0066_E05.b : TCCTGGGACTCCACATCTTGATGACCCTCCTGAGTCCCCAAAAAGCTGGGGCCATCAAGG
ILNT1_0085_A12.b : TCCTGGGACTCCACATCTTGATGACCCTCCTGAGTCCCCAGAAAGCTGGGGCCATCAAGG


20110601C-014077 : CTGACCACATGGGCTCCTATGGACCAGCCTTCTACCAGTCCTATGACGGCTCGGGTCAGT
                   ---------+---------+---------+---------+---------+---------+ 220
LNG01_0001_G02.b : CTGACCACATGGGCTCCTATGGACCAGCCTTCTACCAGTCCTATGACGGCTCGGGTCAGT
SMG01_0047_B09.b : CTGACCACATGGGCTCCTATGGACCAGCCTTCTACCAGTCCTATGACGGCTCGGGTCAGT
ITT01_0006_H09.b : CTGACCACATGGGCTCCTATGGACCAGCCTTCTACCAGTCCTATGACGGCTCGGGTCAGT
MLN01_0101_C08.b : CTGACCACATGGGCTCCTATGGACCAGCCTTCTACCAGTCCTATGACGGCTCGGGTCAGT
CBLT1_0097_F03.b : CTGACCACATGGGCTCCTATGGACCAGCCTTCTACCAGTCCTATGACGGCTCGGGTCAGT
MLN01_0104_D02.b : CTGACCACATGGGCTCCTATGGACCAGCCTTCTACCAGTCCTATGACGGCTCGGGTCAGT
ITT01_0008_G11.b : CTGACCACATGGGCTCCTATGGACCAGCCTTCTACCAGTCCTATGACGGCTCGGGTCAGT
UTR01_0066_E05.b : CTGACCACATGGGCTCCTATGGACCAGCCTTCTACCAGTCCTATGACGGCTCGGGTCAGT
ILNT1_0085_A12.b : CTGACCACATGGGCTCCTATGGACCAGCCTTCTACCAGTCCTATGACGGCTCGGGTCAGT


20110601C-014077 : TCACCTACGATTTCGATGGGGAGCAGCTCTTCTCCGTGGACCTGAAGAAGAGGGAGGCTG
                   ---------+---------+---------+---------+---------+---------+ 280
LNG01_0001_G02.b : TCACCTACGATTTCGATGGGGAGCAGCTCTTCTCCGTGGACCTGAAGAAGAGGGAGGCTG
SMG01_0047_B09.b : TCACCTACGATTTCGATGGGGAGCAGCTCTTCTCCGTGGACCTGAAGAAGAGGGAGGCTG
ITT01_0006_H09.b : TCACCTACGATTTCGATGGGGAGCAGCTCTTCTCCGTGGACCTGAAGAAGAGGGAGGCTG
MLN01_0101_C08.b : TCACCTACGATTTCGATGGGGAGCAGCTCTTCTCCGTGGACCTGAAGAAGAGGGAGGCTG
CBLT1_0097_F03.b : TCACCTACGATTTCGATGGGGAGCAGCTCTTCTCCGTGGACCTGAAGAAGAGGGAGGCTG
MLN01_0104_D02.b : TCACCTACGATTTCGATGGGGAGCAGCTCTTCTCCGTGGACCTGAAGAAGAGGGAGGCTG
ITT01_0008_G11.b : TCACCTACGATTTCGATGGGGAGCAGCTCTTCTCCGTGGACCTGAAGAAGAGGGAGGCTG
UTR01_0066_E05.b : TCACCTACGATTTCGATGGGGAGCAGCTCTTCTCCGTGGACCTGAAGAAGAGGGAGGCTG
ILNT1_0085_A12.b : TCACCTACGATTTCGATGGGGAGCAGCTCTTCTCCGTGGACCTGAAGAAGAGGGAGGCTG


20110601C-014077 : TGTGGCGTCTGCCTGAATTCAGCAACTTCGCCGACTTTGACCCGCAGAATGGGCTGAGAG
                   ---------+---------+---------+---------+---------+---------+ 340
LNG01_0001_G02.b : TGTGGCGTCTGCCTGAATTCAGCAACTTCGCCGACTTTGACCCGCAGAATGGGCTGAGAG
SMG01_0047_B09.b : TGTGGCGTCTGCCTGAATTCAGCAACTTCGCCGACTTTGACCCGCAGAATGGGCTGAGAG
ITT01_0006_H09.b : TGTGGCGTCTGCCTGAATTCAGCAACTTCGCCGACTTTGACCCGCAGAATGGGCTGAGAG
MLN01_0101_C08.b : TGTGGCGTCTGCCTGAATTCAGCAACTTCGCCGACTTTGACCCGCAGAATGGGCTGAGAG
CBLT1_0097_F03.b : TGTGGCGTCTGCCTGAATTCAGCAACTTCGCCGACTTTGACCCGCAGAATGGGCTGAGAG
MLN01_0104_D02.b : TGTGGCGTCTGCCTGAATTCAGCAACTTCGCCGACTTTGACCCGCAGAATGGGCCGAGAG
ITT01_0008_G11.b : TGTGGCGTCTGCCTGAATTCAGCAACTTCGCCGACTTTGACCCGCAGAATGGGCTGAGAG
UTR01_0066_E05.b : TGTGGCGTCTGCCTGAATTCAGCAACTTCGCCGACTTTGACCCGCAGAATGGGCTGAGAG
ILNT1_0085_A12.b : TGTGGCGTCTGCCTGAATTCAGCAACTTCGCCGACTTTGACCCGCAGAATGGGCTGAGAG


20110601C-014077 : GCATTGCACTGATCAGAGCCCATCTGGATGTCTTGGTGGAGCGCTCCAACCATACCAGAG
                   ---------+---------+---------+---------+---------+---------+ 400
LNG01_0001_G02.b : GCATTGCACTGATCAGAGCCCATCTGGATGTCTTGGTGGAGCGCTCCAACCATACCAGAG
SMG01_0047_B09.b : GCATTGCACTGATCAGAGCCCATCTGGATGTCTTGGTGGAGCGCTCCAACCATACCAGAG
ITT01_0006_H09.b : GCATTGCACTGATCAGAGCCCATCTGGATGTCTTGGTGGAGCGCTCCAACCATACCAGAG
MLN01_0101_C08.b : GCATTGCACTGATCAGAGCCCATCTGGATGTCTTGGTGGAGCGCTCCAACCATACCAGAG
CBLT1_0097_F03.b : GCATTGCACTGATCAGAGCCCATCTGGATGTCTTGGTGGAGCGCTCCAACCATACCAGAG
MLN01_0104_D02.b : GCATTGCACTGATCAGAGCCCATCTGGATGTCTTGGTGGAGCGCTCCAACCATACCAGAG
ITT01_0008_G11.b : GCATTGCACTGATCAGAGCCCATCTGGATGTCTTGGTGTAGCGCTCCAACCATACCAGAG
UTR01_0066_E05.b : GCATTGCACTGATCAGAGCCCATCTGGATGTCTTGGTGGAGCGCTCCAACCATACCAGAG
ILNT1_0085_A12.b : GCATTGCACTGATCAGAGCCCATCTGGATGTCTTGGTGGAGCGCTCCAACCATACCAGAG


20110601C-014077 : CCACCAATGTGCCTCCAAGGGTGACCGTCCTCCCCAAGTCCCCTGTGGCGCTGGGCCAGC
                   ---------+---------+---------+---------+---------+---------+ 460
LNG01_0001_G02.b : CCACCAATGTGCCTCCAAGGGTGACCGTCCTCCCCAAGTCCCCTGTGGCGCTGGGCCAGC
SMG01_0047_B09.b : CCACCAATGTGCCTCCAAGGGTGACCGTCCTCCCCAAGTCCCCTGTGGCGCTGGGCCAGC
ITT01_0006_H09.b : CCACCAATGTGCCTCCAAGGGTGACCGTCCTCCCCAAGTCCCCTGTGGCGCTGGGCCAGC
MLN01_0101_C08.b : CCACCAATGTGCCTCCAAGGGTGACCGTCCTCCCCAAGTCCCCTGTGGCGCTGGGCCAGC
CBLT1_0097_F03.b : CCACCAATGTGCCTCCAAGGGTGACCATCCTCCCCAAGTCCCCTGTGGCGCTGGGCCAGC
MLN01_0104_D02.b : CCACCAATGTGCCTCCAAGGGTGACCGTCCTCCCCAAGTCCCCTGTGGCGCTGGGCCAGC
ITT01_0008_G11.b : CCACCAATGTGCCTCCAAGGGTGACCGTCCTCCCCAAGTCCCCTGTGGCGCTGGGCCAGC
UTR01_0066_E05.b : CCACCAATGTGCCTCCAAGGGTGACCGTCCTCCCCAAGTCCCCTGTGGTGCTGGGCCAGC
ILNT1_0085_A12.b : CCACCAATGTGCCTCCAAGGGTGACCATCCTCCCCAAGTCCCCTGTGGCGCTGGGCCAGC


20110601C-014077 : CCAACGTCCTCATCTGCATCGTGGACAACATCTTCCCCCCTGTCATCAATATCACTTGGC
                   ---------+---------+---------+---------+---------+---------+ 520
LNG01_0001_G02.b : CCAACGTCCTCATCTGCATCGTGGACAACATCTTCCCCCCTGTCATCAATATCACTTGGC
SMG01_0047_B09.b : CCAACGTCCTCATCTGCATCGTGGACAACATCTTCCCCCCTGTCATCAATATCACTTGGC
ITT01_0006_H09.b : CCAACGTCCTCATCTGCATCGTGGACAACATCTTCCCCCCTGTCATCAATATCACTTGGC
MLN01_0101_C08.b : CCAACGTCCTCATCTGCATCGTGGACAACATCTTCCCCCCTGTCATCAATATCACTTGGC
CBLT1_0097_F03.b : CCAACGTCCTCATCTGCATCGTGGACAACATCTTCCCCCCTGTCATCAATATCACTTGGC
MLN01_0104_D02.b : CCAACGTCCTCATCTGCATCGTGGACAACATCTTCCCCCCTGTCATCAATATCACTTGGC
ITT01_0008_G11.b : CCAACGTCCTCATCTGCATCGTGGACAACATCTTCCCCCCTGTCATCAATATCACTTGGC
UTR01_0066_E05.b : CCAACGTCCTCATCTGCATCGTGGACAACATCTTCCCCCCTGTCATCAATATCACTTGGC
ILNT1_0085_A12.b : CCAACGTCCTCATCTGCATCGTGGACAACATCTTCCCCCCTGTCATCAATATCACTTGGC


20110601C-014077 : TGCACAACGGCCAGACGGTCACCGAGGGGGTGACCCAGACCAGCTTCTATGCCCAGCCCG
                   ---------+---------+---------+---------+---------+---------+ 580
LNG01_0001_G02.b : TGCACAACGGCCAGACGGTCACCGAGGGGGTGACCCAGACCAGCTTCTATGCCCAGCCCG
SMG01_0047_B09.b : TGCACAACGGCCAGACGGTCACCGAGGGGGTGACCCAGACCAGCTTCTATGCCCAGCCCG
ITT01_0006_H09.b : TGCACAACGGCCAGACGGTCACCGAGGGGGTGACCCAGACCAGCTTCTATGCCCAGCCCG
MLN01_0101_C08.b : TGCACAACGGCCAGACGGTCACCGAGGGGGTGACCCAGACCAGCTTCTATGCCCAGCCCG
CBLT1_0097_F03.b : TGCACAACGGCCAGACGGTCACCGAGGGGGTGACCCAGACCAGCTTCTATGCCCAGCCCG
MLN01_0104_D02.b : TGCACAACGGCCAGACGGTCACCGAGGGGGTGACCCAGACCAGCTTCTATGCCCAGCCCG
ITT01_0008_G11.b : TGCACAACGGCCAGACGGTCACCGAGGGGGTGACCCAGACCAGCTTCTATGCCCAGCCCG
UTR01_0066_E05.b : TGCACAACGGCCAGACGGTCACCGAGGGGGTGACCCAGACCAGCTTCTATGCCCAGCCCG
ILNT1_0085_A12.b : TGCACAACGGCCAGACGGTCACCGAGGGGGTGACCCAGACCAGCTTCTATGCCCAGCCCG


20110601C-014077 : ACCACTCGTTCCGGAAGTTCCACTACCTGACCTTCGTGCCCTCGGCAGGCGACTTCTATG
                   ---------+---------+---------+---------+---------+---------+ 640
LNG01_0001_G02.b : ACCACTCGTTCCGGAAGTTCCACTACCTGACCTTCGTGCCCTCGGCAGGCGACTTCTATG
SMG01_0047_B09.b : ACCACTCATTCCGGAAGTTCCACTACCTGACCTTCGTGCCCTCGGCAGGCGACTTCTATG
ITT01_0006_H09.b : ACCACTCATTCCGGAAGTTCCACTACCTGACCTTCGTGCCCTCGGCAGGCGACTTCTATG
MLN01_0101_C08.b : ACCACTCGTTCCGGAAGTTCCACTACCTGACCTTCGTGCCCTCGGCAGGCGACTTCTATG
CBLT1_0097_F03.b : ACCACTCGTTCCGGAAGTTCCACTACCTGACCTTCGTGCCCTCGGCAGGCGACTTCTATG
MLN01_0104_D02.b : ACCACTCGTTCCGGAAGTTCCACTACCTGACCTTCGTGCCCTCGGCAGGCGACTTCTATG
ITT01_0008_G11.b : ACCACTCGTTCCGGAAGTTCCACTACCTGACCTTCGTGCCCTCGGCAGGCGACTTCTATG
UTR01_0066_E05.b : ACCACTCGTTCCGGAAGTTCCACTACCTGACCTTCGTGCCCTCGGCAGGCGACTTCTATG
ILNT1_0085_A12.b : ACCACTCGTTCCGGAAGTTCCACTACCTGACCTTCGTGCCCTCGGCAGGCGACTTCTATG


20110601C-014077 : ACTGCAAAGTGGAGCACTGGGGCCTGGACGAGCCGCTCTTTACGCACTGGGAGCCCCAGG
                   ---------+---------+---------+---------+---------+---------+ 700
LNG01_0001_G02.b : ACTGCAAAGTGGAGCACTGGGGCCTGGACGAGCCGCTCTTTACGCACTGGGAGCCCCAGG
SMG01_0047_B09.b : ACTGCAAAGTGGAGCACTGGGGCCTGGACGAGCCGCTCTTTACGCACTGGGAGCCCCAGG
ITT01_0006_H09.b : ACTGCAAAGTGGAGCACTGGGGCCTGGACGAGCCGCTCTTTACGCACTGGGAGCCCCAGG
MLN01_0101_C08.b : ACTGCAAAGTGGAGCACTGGGGCCTGGACGAGCCGCTCTTTACGCACTGGGAGCCCCAGG
CBLT1_0097_F03.b : ACTGCAAAGTGGAGCACTGGGGCCTGGACGAGCCGCTCTTTACGCACTGGGAGCCCCAGG
MLN01_0104_D02.b : ACTGCAAAGTGGAGCACTGGGGCCTGGACGAGCCGCTCTTTACGCACTGGGAGCCCCAGG
ITT01_0008_G11.b : ACTGCAAAGTGGAGCACTGGGGCCTGGACGAGCCGCTCTTTACGCACTGGGAGCCCCAGG
UTR01_0066_E05.b : ACTGCAAAGTGGAGCACTGGGGCCTGGACGAGCCGCTCTTTACGCACTGGGAGCCCCAGG
ILNT1_0085_A12.b : ACTGCAAAGTGGAGCACTGGGGCCTGGACGAGCCGCTCTTTACGCACTGGGAGCCCCAGG


20110601C-014077 : TGACTATGCCGCTGCCAGACACCACAGAGACCCTGGTCTGTGCCCTCGGCCTGGCGCTTG
                   ---------+---------+---------+---------+---------+---------+ 760
LNG01_0001_G02.b : TGACTATGCCGCTGCCAGACACCACAGAGACCCTGGTCTGTGCCCTCGGCCTGGCGCTTG
SMG01_0047_B09.b : TGACTATGCCGCTGCCAGACACCACAGAGACCCTGGTCTATGCCCTCGGCCTGGCGCTTG
ITT01_0006_H09.b : TGACTATGCCGCTGCCAGACACCACAGAGACCCTGGTCTATGCCCTCGGCCTGGCGCTTG
MLN01_0101_C08.b : TGACTATGCCGCTGCCAGACACCACAGAGACCCTGGTCTGTGCCCTCGGCCTGGCGCTTG
CBLT1_0097_F03.b : TGACTATGCCGCTGCCAGACACCACAGAGACCCTGGTCTGTGCCCTCGGCCTGGCGCTTG
MLN01_0104_D02.b : TGACTATGCCGCTGCCAGACACCACAGAGACCCTGGTCTGTGCCCTCGGCCTGGCGCTTG
ITT01_0008_G11.b : TGACTATGCCGCTGCCAGACACCACAGAGACCCTGGTCTGTGCCCTCGGCCTGGCGTTTG
UTR01_0066_E05.b : TGACTATGCCGCTGCTAGACACCACAGAGACCCTGGTCTGTGCCCTCGGCCTGGCGCTTG
ILNT1_0085_A12.b : TGACTATGCCGCTGCCAGACACCACAGAGACCCTGGTCTGTGCCCTCGGCCTGGCGCTTG


20110601C-014077 : GCCTGGTGGGCTTCCTCGTGGGCGTCACCCTTATCATCACAGGCAGACGCCGGTCCAGCT
                   ---------+---------+---------+---------+---------+---------+ 820
LNG01_0001_G02.b : GCCTGGTGGGCTTCCTCGTGGGTGTCACCCTTATCATCACAGGCAGACGCCGGTCCAGCT
SMG01_0047_B09.b : GCCTGGTGGGCTTCCTCGTGGGCGTCACCCTTATCATCACAGGCAGACGCCCGTCCAGCT
ITT01_0006_H09.b : GCCTGGTGGGCTTCCTCGTGGGCGTCACCCTTATCATCACAGGCAGACGCCGGTCCAGCT
MLN01_0101_C08.b : GCCTGGTGGGCTTCCTCGTGGGTGTCACCCTTATCATCACAGGCAGACGCCGGTCCAGCT
CBLT1_0097_F03.b : GCCTGGTGGGCTTCCTCGTGGGCGTCACCCTTATCATCACAGGCAGACGCCGGTCCAGCT
MLN01_0104_D02.b : GCCTGGTGGGCTTCCTCGTGGGTGTCACCCTTATCATCACAGGCAGACGCCGGTCCAGCT
ITT01_0008_G11.b : GCCTGGTGGGCTTCCTCGTGGGTGTCACCCTTATCATCACAGGCAGACGCCGGTCCAGCT
UTR01_0066_E05.b : GCCTGGTGGGCTTCCTCGTGGGCGTCACCCTTATCATCACAGGCAGACGCCGGTCCAGCT
ILNT1_0085_A12.b : GCCTGGTGGGCTTCCTCGTGGGCGTCACCCTTATCATCACAGGCAGACGCCGGTCCAGCT


20110601C-014077 : CCCCCAGGTAATGATCCTT*CTGAGAGGCTGGGATGTGAGAGAGA*CCCTCCGCCCCAGC
                   ---------+---------+---------+---------+---------+---------+ 878
LNG01_0001_G02.b : CCCCCAGGTAATGATCCTT*CTGAGAGGCTGGGATGTGAGAGAGA*CCCTCCGCCCCAGC
SMG01_0047_B09.b : CCCCCAGGTAATGATCCTT*CTGAAAAGCTGGGATGTGAGAGAAA*CCCTCCGCCCCAAC
ITT01_0006_H09.b : CCCCCAGGTAATGATCCTT*CTGAGANGCTGGGATGTGAGAGAGA*CCCTCCG*CCCAGC
MLN01_0101_C08.b : CCCCCAGGTAATGATCCTT*CTGAGAGGCTGGGATGTGAGAGAGA*CCCTCCG*CCCAGC
CBLT1_0097_F03.b : CCCCCAGGTAATGATCCTT*CTGAGAGGCTGGGATGTGAGAAAGA*CCCTCCG*CCCAGC
MLN01_0104_D02.b : CCCCCAGGTAATGATCCTT*CTGAGAGGCTGGGATGTGAGAGAGA*CCCTCCGCCCCAGC
ITT01_0008_G11.b : CCCCCAGGTAATGATCCTT*CTGAGGGGCTGGGATGTGAGAGAGA*CCCTCCGCCCCAGC
UTR01_0066_E05.b : CCCCCCAGTGATGATCCTTTCTGAGAGGCTGGGATGTGAGAGAGACCCCTCCGCCCCAGC
ILNT1_0085_A12.b : CCCCCAGGTAATGATCCTT*CTGAGAGGCTGGGATGTGAGAGAGA*CCCTCCGCCCCAGC


20110601C-014077 : TTCCTCGCAAGT*TTCTGACAGCCCGGAATACTT*GGCTCCACCATCCACCAAGTGCATC
                   ---------+---------+---------+---------+---------+---------+ 936
LNG01_0001_G02.b : TTCCTCGCAAGT*TTCTGACAGCCCAGAATACTT*GGCTCCACCATCCACCAAGTGCATC
SMG01_0047_B09.b : T*CCTCGCAAGT*TTCTGACAccccggattatttggctcaccatccaccaatgcatcccg
ITT01_0006_H09.b : TTCCTCGCAAGT**TCTGACAGCCCGGAATACTTggctccacatccacaagtgcatcccg
MLN01_0101_C08.b : NTCCTCGCAAGT*TTCTGACNAGCCAGAATACTT*GGCTCCACCATCCCACAAGTGCATC
CBLT1_0097_F03.b : TTCCTCGCCAGT*TTCTGACAGCCCGGAATACTT*GGCTCCACCATCCACCCAGTGCATC
MLN01_0104_D02.b : TTCCTCGCAAGT*TTCTGACAGCCCAGAATACTT*GGCTCCACCATCCACCAAGTGCATC
ITT01_0008_G11.b : TTCCTCGCAAGT*TTCTGACAGCCCAGAATACTT*GGGCTCACCATCCACCAAGTGCATC
UTR01_0066_E05.b : TTCCTCGCAAGTTTTCTGACAGCCCGGAATACTT*GGCTCCACCTTCCACCCAGTGCATC
ILNT1_0085_A12.b : TTCCTCGCAAGT*TTCTGACAGCCCGGGATACTTTGGCTCCACCATCCACCAAGTGCATC


20110601C-014077 : CCGG*CAGAGCTGCCTTTCAGTGGCATCAACCTGTAACCTAAACCCCTCCCTCTTTTTTT
                   ---------+---------+---------+---------+---------+---------+ 995
LNG01_0001_G02.b : CCCG*CAGAGCTGCCTTTCAGTGGCATCAACCTGTAGCCTAAAacgcttccccctttttg
SMG01_0047_B09.b : gcagaacttactttcaagggcatcacctgtaagccaaacaccttctccctttttggccca
ITT01_0006_H09.b : gcgagctgcctttcagtggcatcacctgtagcctagacgcctctcctttttttgcccagt
MLN01_0101_C08.b : CCGG*CAGAGCTGCCTTTCAGTGGCATCAACCTGTAGCCTAgaacgctccttcttttttg
CBLT1_0097_F03.b : CTGG*CAAAAGCTGCCTTTATTGGCATCAACCTGTAACCTAgacgcctcctccttttttg
MLN01_0104_D02.b : CCGGGCAGAGCTGCCTTTCAGTGGCATCACCCTGTAACCTAAACgcctcctccttttttg
ITT01_0008_G11.b : CCCG*CAAAGCTGCCTTTCAGTGGCATCAACCTGTAGCCTAGACGCCTCCTCCTTTTTtg
UTR01_0066_E05.b : CCAG*CAAAACTGCCTTTCAGTGGCATCAACCTGTAACCTAAACCCCCCCCTCCTTTTTT
ILNT1_0085_A12.b : CTGG*CAGAGCTGCCTTTCAATGGCATCAACCTGTAACCTAgacgcctcctctttttttg


20110601C-014077 : TGGCCCCAGTATCTCTGGCAGGAACTTCTGGGGGGAACACCAACTAACCTCCCCTCCCCC
                   ---------+---------+---------+---------+---------+---------+ 1055
LNG01_0001_G02.b : ggccccagtactcatgggcaggacttcctgggggaaaccccaactaacctccccttcccc
SMG01_0047_B09.b : gtactcctggcaggattctgggggaaaaaccacaactcccctcccactccaatatgcccc
ITT01_0006_H09.b : actcatgccaggactctgggggagcacactagctcccctcccactccatatgcactctgc
MLN01_0101_C08.b : gccccagtactcatggcaggacttctgggggagcaacnactagcttccctccccaacttc
CBLT1_0097_F03.b : gcccaaatcccatggccgggattctgggggagcacaattaactcccctccccacctccat
MLN01_0104_D02.b : gcccccgtactcaggccaggactttctggggtaccaccaactaactcccctccccacttc
ITT01_0008_G11.b : ccccagtactcatgccaggacttctgggggagcaccactagctcccctccccacttccaa
UTR01_0066_E05.b : TGGCCCCAGTATCTCTGGCAGGAACTTCTGGGGGGAACACCAACTAACCTCCCCTCCCCC
ILNT1_0085_A12.b : gccccaatactcatggcaggaacttctgggggaagcaccaactagctccccctccccacc


20110601C-014077 : CCTCCAAAAAGCCCCTCCTTGCCCCCTTCTAAAAGCCCCCGGCTTACCCCCAAAAAAAAT
                   ---------+---------+---------+---------+---------+---------+ 1115
LNG01_0001_G02.b : tacctcccattattgccctcttgcctcccttcccaag                      
SMG01_0047_B09.b : ttgtccttcaaaaccccgggtaccccaataaaatttaacccggtttttctgttaaaaaaa
ITT01_0006_H09.b : tcatccaagtccctgctaccccagtaaaatttaaacgtgttggactgtaaaaaaaaaaaa
MLN01_0101_C08.b : caatatgcactcttgctcatccaaagtcccctggttaccccattaaattttaaacagtga
CBLT1_0097_F03.b : atgcactcttgcccatccaaattccctgctacttcagtaaattttaaacatgttgtactg
MLN01_0104_D02.b : catatgcactcctggctccttcaaagtcccctgctaaccgcattaaaatttaaccgttgg
ITT01_0008_G11.b : aatcactcttgctccatccaaagtccctgctagccgcagtaaatttaaacagtgtttgac
UTR01_0066_E05.b : CCTCCAAAAAGCCCCTCCTTGCCCCCTTCTAAAAGCCCCCGGCTTACCCCCAAAAAAAAT
ILNT1_0085_A12.b : tcaataagccatcttgctccatccaaattcccctgctaactgcaataaaattttaaacag


20110601C-014077 : TTTAAAACCCGTGAAAAAAAAAAAAAAAAAAAAAAAAAGGCC..................
                   ---------+---------+---------+---------+---------+---------+ 1157
LNG01_0001_G02.b :                                                             
SMG01_0047_B09.b : aaaaaaaaaaaaaaaagcgcaagtgtccaaactggggtccggccctttaaatttccttgg
ITT01_0006_H09.b : aaaaaaanaaaaaaaaaannnnnnnnnngggccaatttctcaactaggtcccgccttcaa
MLN01_0101_C08.b : aaaaaaaaaaaaaaaggccattgtgctccaattgcagtcccggccccctctaattatccc
CBLT1_0097_F03.b : tatgcttttgccggctctgtaaaccctccagtttcaggaatctggcatcgaaaagggaat
MLN01_0104_D02.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
ITT01_0008_G11.b : tgtatgcattttgccgggcttggtgacctccccaagtgtcaggaagccggatttggaaga
UTR01_0066_E05.b : TTTAAAACCCGTGaaaaaaaaaaaaaaaaaaaaaaaaaGGCCccaattttgtttctcaac
ILNT1_0085_A12.b : tgaa                                                       


20110601C-014077 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1157
LNG01_0001_G02.b :                                                             
SMG01_0047_B09.b : gggccaaattacgaaccacttttttaaaaagggcccaaaggggtaaataaagaggcgcgc
ITT01_0006_H09.b : atatcctcaaggccaaattacctaccccttttgtaaggggcccaaggagccaaaaaacag
MLN01_0101_C08.b : cgagggcccaaccttaccaaccacatttcgtgtaaaggggcccctatatgagcgcaatat
CBLT1_0097_F03.b : cgggtacaatccctaccccacacatggttgggtataagcttatttccggcctcccacatt
MLN01_0104_D02.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn                           
ITT01_0008_G11.b : gggaatccgggggagaatcctgacctgacaggtgctggggttatgcccattccaggccat
UTR01_0066_E05.b : cctgtacgggtcccccg                                          
ILNT1_0085_A12.b :                                                             


20110601C-014077 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1157
LNG01_0001_G02.b :                                                             
SMG01_0047_B09.b : cgttttaccgcgggggaaaaccctttgtattttaaaaaacttctgtggggatttggacca
ITT01_0006_H09.b : gcggcgccctttaccctcccaggaaacccattggacttttaaaacctctcgtgtgaa  
MLN01_0101_C08.b : aacctggcatggcgcctttttt                                     
CBLT1_0097_F03.b : cttgtcccttaaccacaggggtacttgttagagagtgtaaagactttccttaacaaactc
MLN01_0104_D02.b :                                                             
ITT01_0008_G11.b : cccctaagtttggtcccttgtacaccccggggctcctggt                   
UTR01_0066_E05.b :                                                             
ILNT1_0085_A12.b :                                                             


20110601C-014077 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1157
LNG01_0001_G02.b :                                                             
SMG01_0047_B09.b : ccccaattaactgggaaaaaatttttgttgtgcaacccccgccccgggttcttccaaaaa
ITT01_0006_H09.b :                                                             
MLN01_0101_C08.b :                                                             
CBLT1_0097_F03.b : cgtataaattctccacagattaatcctgccgccc                         
MLN01_0104_D02.b :                                                             
ITT01_0008_G11.b :                                                             
UTR01_0066_E05.b :                                                             
ILNT1_0085_A12.b :                                                             


20110601C-014077 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1157
LNG01_0001_G02.b :                                                             
SMG01_0047_B09.b : aaaaaaaaagcgctttttgttatatacccc                             
ITT01_0006_H09.b :                                                             
MLN01_0101_C08.b :                                                             
CBLT1_0097_F03.b :                                                             
MLN01_0104_D02.b :                                                             
ITT01_0008_G11.b :                                                             
UTR01_0066_E05.b :                                                             
ILNT1_0085_A12.b :