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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-014226

Length: 1,091

Sequence:  [FASTA format sequence]
CTCAGACTCC GGAGAGCGAT CTCCTCTGAG CCCACTGGCG TCATAAACCT GAGTTCTCCA
ACTCTCCAAG TGCTCGCTTG GTTTCTCGCC GGGTCAAAGA GCTGATCCAC TGCAGCCACA
GAGCTGCTGG AGCTGGGACA CGACAGCCAC AGGGCTGTCG CCAGAACTGA TACGCTGCGG
CCCAGGGCTT CTGGGCAGCT GCCATAACAC TGCCACGAGC AGAGGAAAGA GAAGTTGGGC
CACGAGCAGG AAAAAGTGCA ACTACAGACG GCGGAGACGG TAGCGTTGCA CTCGACGGAA
TCGCAACCGT GAGTAGAAAC TTTAAGCCAG GATAACAATG GGGCAGAATC AATCACAGGA
AACCAAACAT TATATTCAGT TGCTGAAATG TGTGTTGAAA TGGTCGGGGG CTCAGGTAAC
AGGGTCTGAG ATCGAGGAAT TGTTAGAAGC CGTGGTCAAA TATAACCCTT GGTTTCCAGG
CGAGGGTACT GTGGACCCGG AATGCTGGGA TCTCGTGGGG AAAAATTTAA GGCACGCCCA
TCGGTCGGGG GCCTCTCTTT CTGTTTCTGT TTTTTCTACA TGGGAACTAG TAAGACGTGT
TTTGGAGCCC TTACGGGAAC ATAAAGAAAA GCCTATGGCT TCTGCGCCCC CTCAGGCCGA
TCCCTTTCTT GATGAGAGTT TAAATAGGCC GTTAGCTGTG GCGGCAGCAC TAACTCCCCT
TCAATCAGCC TTAAAGTCGG CTAGTCTAGA GGATCGGACC TTTTTAGCAT GCCCTATACC
TATTGTCCCC AATCCTCAAG TCCCAGGACA AAATATCCAT GCGCAGAACA CTTTTGATTT
TAAAGATCTT AAAGCTCTCC GGGAGAGTGT GATACAGAAC GGAGTGACAG CTCCCTTTAC
GATGCGCTTG GTAGAAAGCG TGGGGACACT CCAGCTTCCC CCGTGGGACT GGCATATGAT
AGCCAAAGCC ACCCTGGATG GTATAGATTA TTTAATTTGG AAGTCTAGTC TTTCAGATTT
TTGTCGGGGA CAGGCTTGCT TAAATAAAAG AGATCATGTT CCAATTACTT TTGAAATGTT
GGTGGGGGAC A

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		LOC790429	PREDICTED: Gag-like [Bos taurus].	92.8	5e-19	O
		LOC100141103	PREDICTED: Gag-like [Bos taurus].	91.3	1e-18	O
		LOC781470	PREDICTED: Gag-like [Bos taurus].	90.1	3e-18	O
		LOC790428	PREDICTED: Gag-like [Bos taurus].	89.4	5e-18	O
		LOC786328	PREDICTED: Gag-like [Bos taurus].	89.4	5e-18	O
		LOC790428	PREDICTED: Gag-like [Bos taurus].	89.4	5e-18	O
		LOC100138895	PREDICTED: Gag-like [Bos taurus].	88.2	1e-17
		LOC786328	PREDICTED: Gag-like [Bos taurus].	87.4	2e-17
		LOC100140993	PREDICTED: Gag-like [Bos taurus].	87	3e-17
		LOC100140993	PREDICTED: Gag-like [Bos taurus].	87	3e-17

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20110601C-014226 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
DCI01_0005_B09.b : nnnnggtatctaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b :                                                             
OVRM1_0151_F03.b :                                                             


20110601C-014226 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
DCI01_0005_B09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b :                                                             
OVRM1_0151_F03.b :                                                             


20110601C-014226 : .......................................CTCAGACTCCGGAGAGCGATC
                   ---------+---------+---------+---------+---------+---------+ 21
DCI01_0005_B09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCAGACTCCGGAGAGCGATC
OVRM1_0016_G09.b :                      agtctgtxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PTG01_0097_G08.b :                      nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
OVRM1_0151_F03.b :                                                             


20110601C-014226 : TCCTCTGAGCCCACTGGCGTCATAAACCTGAGTTCTCCAACTCTCCAAGTGCTCGCTTGG
                   ---------+---------+---------+---------+---------+---------+ 81
DCI01_0005_B09.b : TCCTCTGAGCCCACTGGCGTCATAAACCTGAGTTCTCCAACTCTCCAAGTGCTCGCTTGG
OVRM1_0016_G09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxCCTGAGTTCTCCAACTCTCCAAGTGCTCGCTTGG
PTG01_0097_G08.b : nnnnnnnnnnnnxxxxxxxxxxxxxcctgagnTTCTCCAACTCTCCAAGTGCTCGCTTGG
OVRM1_0151_F03.b :                                                             


20110601C-014226 : TTTCTCGCCGGGTCAAAGAGCTGATCCACTGCAGCCACAGAGCTGCTGGAGCTGGGACAC
                   ---------+---------+---------+---------+---------+---------+ 141
DCI01_0005_B09.b : TTTCTCGCCGGGTCAAAGAGCTGATCCACTGCAGCCACAGAGCTGCTGGAGCTGGGACAC
OVRM1_0016_G09.b : TTTCTCGCCGGGTCAAAGAGCTGATCCACTGCAGCCACAGAGCTGCTGGAGCTGGGACAC
PTG01_0097_G08.b : TTTCTCGCCGGGTCAAAGAGCTGATCCACTGCAGCCACAGAGCTGCTGGAGCTGGGACAC
OVRM1_0151_F03.b :                                                             


20110601C-014226 : GACAGCCACAGGGCTGTCGCCAGAACTGATACGCTGCGGCCCAGGGCTTCTGGGCAGCTG
                   ---------+---------+---------+---------+---------+---------+ 201
DCI01_0005_B09.b : GACAGCCACAGGGCTGTCGCCAGAACTGATAGGCTGCAGCCCAGGGCTTCTGGGCAGCTG
OVRM1_0016_G09.b : GACAGCCACAGGGCTGTCGCCAGAACTGATACGCTGCGGCCCAGGGCTTCTGGGCAGCTG
PTG01_0097_G08.b : GACAGCCACAGGGCTGTCGCCAGAACTGATACGCTGCGGCCCAGGGCTTCTGGGCAGCTG
OVRM1_0151_F03.b :                                                             


20110601C-014226 : CCATAACACTGCCACGAGCAGAGGAAAGAGAAGTTGGGCCACGAGCAGGAAAAAGTGCAA
                   ---------+---------+---------+---------+---------+---------+ 261
DCI01_0005_B09.b : CCATAACACTGCCACGAGCAGAGGAAAGAGAAGTTGGGCCACGAGCAGGAAAAAGTGCAA
OVRM1_0016_G09.b : CCATAACACTGCCACGAGCAGAGGAAAGAGAAGTTGGGCCACGAGCAGGAAAAAGTGCAA
PTG01_0097_G08.b : CCATAACACTGCCACGAGCAGAGGAAAGAGAAGTTGGGCCACGAGCAGGAAAAAGTGCAA
OVRM1_0151_F03.b :                                                             


20110601C-014226 : CTACAGACGGCGGAGACGGTAGCGTTGCACTCGACGGAATCGCAACCGTGAGTAGAAACT
                   ---------+---------+---------+---------+---------+---------+ 321
DCI01_0005_B09.b : CTACAGACGGCGGAGACGGTAGCGTTGCACTCGACGGAATCGCAACCGTGAGTAGAAACT
OVRM1_0016_G09.b : CTACAGACGGCGGAGACGGTAGCGTTGCACTCGACGGAATCGCAACCGTGAGTAGAAACT
PTG01_0097_G08.b : CTACAGACGGCGGAGACGGTAGCGTTGCACTCGACGGAATCGCAACCGTGAGTAGAAACT
OVRM1_0151_F03.b :                                                 agttgtcxxxxx


20110601C-014226 : TTAAGCCAGGATAACAATGGGGCAGAATCAATCACAGGAAACCAAACATTATATTCAGTT
                   ---------+---------+---------+---------+---------+---------+ 381
DCI01_0005_B09.b : TTAAGCCAGGATAACAATGGGGCAGAATCAATCACAGGAAACCAAACATTATATTCAGTT
OVRM1_0016_G09.b : TTAAGCCAGGATAACAATGGGGCAGAATCAATCACAGGAAACTAAACATTATATTCAGTT
PTG01_0097_G08.b : TTAAGCCAGGATAACAATGGGGCAGAATCAATCACAGGAAACCAAACATTATATTCAGTT
OVRM1_0151_F03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTATATTCAGTT


20110601C-014226 : GCTGAAATGTGTGTTGAAATGGTCGGGGGCTCAGGTAACAGGGTCTGAGATCGAGGAATT
                   ---------+---------+---------+---------+---------+---------+ 441
DCI01_0005_B09.b : GCTGAAATGTGTGTTGAAATGGTCGGGGGCTCAGGTAACAGGGTCTGAGATCGAGGAATT
OVRM1_0016_G09.b : GCTGAAATGTGTGTTGAAATGGTCGGGGGCTCAGGTAACAGGGTCTGAGATCGAGGAATT
PTG01_0097_G08.b : GCTGAAATGTGTGTTGAAATGGTCGGGGGCTCAGGTAACAGGGTCTGAGATCGAGGAATT
OVRM1_0151_F03.b : GCTGAAATGTGTGTTGAAATGGTCGGGGGCTCAGGTAACAGGGTCTGAGATCGAGGAATT


20110601C-014226 : GTTAGAAGCCGTGGTCAAATATAACCCTTGGTTTCCAGGCGAGGGTACTGTGGACCCGGA
                   ---------+---------+---------+---------+---------+---------+ 501
DCI01_0005_B09.b : GTTAGGAGCCGTGGTCAAATATAACCCTTGGTTTCCAGGCGAGGGTACTGTGGACCCGGA
OVRM1_0016_G09.b : GTTAGAAGCCGCGGTCAAATATAACCCTTGGTTTCCAGGCGAGGGTACTGTGGACCCGGA
PTG01_0097_G08.b : GTTAGAAGCCGTGGTCAAATATAACCCTTGGTTTCCAGGCGAGGGTACTGTGGACCCGGA
OVRM1_0151_F03.b : GTTAGAAGCCGTGGTCAAATATAACCCTTGGTTTCCAGGCGAGGGTACTGTGGACCCGGA


20110601C-014226 : ATGCTGGGATCTCGTGGGGAAAAATTTAAGGCACGCCCATCGGTCGGGGGCCTCTCTTTC
                   ---------+---------+---------+---------+---------+---------+ 561
DCI01_0005_B09.b : ATGCTGGGATCTCGTGGGGAAAAATTTAAGGCACGCCCATCGGTCGGGGGCCTCTCTTTC
OVRM1_0016_G09.b : ATGCTGGGATCTCGTGGGGAAAAATTTAAGGCACGCCCATCGGTCGGGGGCCTCTCTTTC
PTG01_0097_G08.b : ATGCTGGGATCTCGTGGGGAAAAATTTAAGGCACGCCCATCGGTCGGGGGCCTCTCTTTC
OVRM1_0151_F03.b : ATGCTGGGATCTCGTGGGGAAAAATTTAAGGCACGCCCATCGGTCGGGGGCCTCTCTTTC


20110601C-014226 : TGTTTCTGTTTTTTCTACATGGGAACTAGTAAGACGTGTTTTGGAGCCCTTACGGGAACA
                   ---------+---------+---------+---------+---------+---------+ 621
DCI01_0005_B09.b : TGTTTCTGTTTTTTCTACATGGGAACTAGTAAGACGTGTTTTGGAGCCCTTACGGGAACA
OVRM1_0016_G09.b : TGCTTCTGTTTTTT*TACATGGGAACTAGTAAGACGTGTTTTGGAGCCCTTACGGGAACA
PTG01_0097_G08.b : TGTTTCTGTTTTTTCTACATGGGAACTAGTAAGACGTGTTTTGGAGCCCTTACGGGAACA
OVRM1_0151_F03.b : TGTTTCTGTTTTTTCTACATGGGAACTAGTAAGACGTGTTTTGGAGCCCTTACGGGAACA


20110601C-014226 : TAAAGAAAAGCCTATGGCTTCTGCGCCCCCTCAGGCCGATCCCTTTCTTGATGAGAGTTT
                   ---------+---------+---------+---------+---------+---------+ 681
DCI01_0005_B09.b : TAAAGAAAAGCCTATAGCTTCTGCTCCCCCTCANGCCGATCCCTTTCTTGATGAGAGTTT
OVRM1_0016_G09.b : TACAGAAAAGCCTATGGCTTCTGCGCCCCCTCAGGCCGATCCCTTTCTTGATGAGAGTTT
PTG01_0097_G08.b : TAAAGAAAAGCCTATAGCTTCTGCTCCCCCTCAGGCCGATCCCTTTCTTGATGAGAGTTT
OVRM1_0151_F03.b : TAAAGAAAAGCCTATGGCTTCTGCGCCCCCTCAGGCCGATCCCTTTCTTGATGAGAGTTT


20110601C-014226 : AAATAGGCCGTTAGCTGTGGCGGCAGCACTAACTCCCCTTCAATCAGCCTTAAAGTCGGC
                   ---------+---------+---------+---------+---------+---------+ 741
DCI01_0005_B09.b : AAATAGGCCGTTAGCTGTGGCGGCAGCACTAACTCCCCTTNCATCAGCCTTAAAGTCAGC
OVRM1_0016_G09.b : ACATTGGCCGTTAGCTGTGGCGGCAGCACTAACTACCCTTTAATCAGCCTTAAAGACGGC
PTG01_0097_G08.b : AAATAGCCCGTTAGCTGTGGCGGCAGCACTAACTCCCCTTCAATCAGCCTTAAAGTCAGC
OVRM1_0151_F03.b : AAATAGGCCGTTAGCTGTGGCGGCAGCACTAACTCCCCTTCAATCAGCCTTAAAGTCGGC


20110601C-014226 : TAGTCTAGAGGATCGGACCTTTTTAGCATGCCCTATACCTATTGTCCCCAATCCTCAAGT
                   ---------+---------+---------+---------+---------+---------+ 801
DCI01_0005_B09.b : TAGTCTAGAGGATCGGACCTTTTTAGCGTGCCCTATACCTATTTGTCCCCATCCTNCAGT
OVRM1_0016_G09.b : TAGTCTATAGGATCGGACCTTTATAGCATGCCCTATACCTATTgcccnccatcctcagtg
PTG01_0097_G08.b : TAGTCTAGAGGATCGGACCTTTTTAGCATGCCCTATACCTATTgtcccaatcctcaagtc
OVRM1_0151_F03.b : TAGTCTAGAGGATCGGACCTTTTTAGCATGCCCTATACCTATTGTCCCCAATCCTCAAGT


20110601C-014226 : CCCAGGACAAAATATCCATGCGCAGAACACTTTTGATTTTAAAGATCTTAAAGCTCTCCG
                   ---------+---------+---------+---------+---------+---------+ 861
DCI01_0005_B09.b : CCCAGGACGAAATATCCATGCGCAGAACACTTTTGATTTTAAAGATCCTTAAGCTCTCCG
OVRM1_0016_G09.b : tcacgacaaaatatcctgcgcagacacttttgtttcat                     
PTG01_0097_G08.b : ccaggaacaaatatccatgcgcagaacacttttgattttaaagatcttaaagctctcggg
OVRM1_0151_F03.b : CCCAGGACAAAATATCCATGCGCAGAACACTTTTGATTTTAAAGATCTTAAAGCTCTCCG


20110601C-014226 : GGAGAGTGTGATACAGAACGGAGTGACAGCTCCCTTTACGATGCGCTTGGTAGAAAGCGT
                   ---------+---------+---------+---------+---------+---------+ 921
DCI01_0005_B09.b : GGAGAGTGTGATACAGAACGGAGTGACAGCTCCCTTTACGATGCGCTTGGTAGAAgcgtg
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b : gagagtgtgatacaaaaaggagtgacgcctccctttatgatgcccttgggtaaaaacggg
OVRM1_0151_F03.b : GGAGAGTGTGATACAGAACGGAGTGACAGCTCCCTTTACGATGCGCTTGGTAGAAAGCGT


20110601C-014226 : GGGGACACTCCAGCTTCCCCCGTGGGACTGGCATATGATAGCCAAAGCCACCCTGGATGG
                   ---------+---------+---------+---------+---------+---------+ 981
DCI01_0005_B09.b : gggacctccagcttccccctgggactggctatgatagccaagccaccctggatgtataga
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b : gggacactccaccttcccccgtgggaatggcatatgaataccaaagccacccgggaagta
OVRM1_0151_F03.b : GGGGACACTCCAGCTTCCCCCGTGGGACTGGCATATGATAGCCAAAGCCACCCTGGATGG


20110601C-014226 : TATAGATTATTTAATTTGGAAGTCTAGTCTTTCAGATTTTTGTCGGGGACAGGCTTGCTT
                   ---------+---------+---------+---------+---------+---------+ 1041
DCI01_0005_B09.b : tatttaatttggagtctagtctttcaattttgtcgggacaggctgcctaataaagaaatc
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b : aaaattatttaatttgaaaaccaaacctttcaaattttggcggggacgggcttgcttaaa
OVRM1_0151_F03.b : TATAGATTATTTAATTTGGAAGTCTAGTCTTTCAGATTTTTGTCGGGGACAGGCTTGCTT


20110601C-014226 : AAATAAAAGAGATCATGTTCCAATTACTTTTGAAATGTTGGTGGGGGACA..........
                   ---------+---------+---------+---------+---------+---------+ 1091
DCI01_0005_B09.b : aggtccaatactttggaagttggggggaaagccctttctttgcttacaacaacggcttaa
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b : aaaaaaaatctgttccaattacttttgaaagtgggggggaaaggcccttttctgggctaa
OVRM1_0151_F03.b : AAATAAAAGAGATCATGTTCCAATTACTTTTGAAATGTTGGTGGGGGACA         


20110601C-014226 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1091
DCI01_0005_B09.b : atccctgccataaacatgaacgggcccccaaacgggaaaaattcgggaagaaacccagga
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b : aaaaaaactgggtttaattcccctgggaaaaaacaattaacccggccccccaaaaggggg
OVRM1_0151_F03.b :                                                             


20110601C-014226 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1091
DCI01_0005_B09.b : attttatgttctaggccccaaacttctcaatttggggcccaaagggcgcctcccaaaacc
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b : aaaaaattcggggaaaggaaaccaaggactcttttactttcctttagggccctaaaactt
OVRM1_0151_F03.b :                                                             


20110601C-014226 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1091
DCI01_0005_B09.b : ctttggggggattataatat                                       
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b : tcccatttgggggcccccaaaaggccgcccccccagaacccttctcggggggaaatttta
OVRM1_0151_F03.b :                                                             


20110601C-014226 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1091
DCI01_0005_B09.b :                                                             
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b : taaaattgggaaaaaaccaaaaaaaggtaagggggggccccataaaatagaaacccttta
OVRM1_0151_F03.b :                                                             


20110601C-014226 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1091
DCI01_0005_B09.b :                                                             
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b : tttagggcggggggggaggggggccaccaaaacggccccaaaaaaatccccccaaaaatt
OVRM1_0151_F03.b :                                                             


20110601C-014226 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1091
DCI01_0005_B09.b :                                                             
OVRM1_0016_G09.b :                                                             
PTG01_0097_G08.b : ttttgggggagattataagagcccccccaaaacccccgattttc               
OVRM1_0151_F03.b :