Assembly Overview:
TOP
BLAST on RefSeq (Human):
TOP
| | Locus | Definition | Score | E value | FL |
---|
BLAST on RefSeq (Mouse):
TOP
| | Locus | Definition | Score | E value | FL |
---|
BLAST on RefSeq (Dog):
TOP
| | Locus | Definition | Score | E value | FL |
---|
BLAST on RefSeq (Cattle):
TOP
| | Locus | Definition | Score | E value | FL |
---|
BLAST on RefSeq (Pig):
TOP
| | Locus | Definition | Score | E value | FL |
---|
 |
 | HCST | hematopoietic cell signal transducer precursor [Sus scrofa]. | 61.6 | 5e-10 | O |
Alignment:
TOP
20110601C-014252 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
ILNT1_0037_H04.b : nnnnggcgagagtacgaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0034_G11.b : tttttggagagtac
BMWN1_0080_C08.b : tttttggagagtxxxxxxx
ILNT1_0057_B03.b : nnnggctagtaga
BMWN1_0044_C12.b : ttggagagtxxxxxx
BMWN1_0007_C04.b :
BMWN1_0035_G07.b :
20110601C-014252 : ...GACCAGCAGAGTGACATCCGCTATTGCTGCCTCTCTACTCCCCCCACTGTTCCTCAG
---------+---------+---------+---------+---------+---------+ 57
ILNT1_0037_H04.b : xxxGACCAGCAGAGTGACATCCGCTATTGCTGCCTCTCTACTCCCCCCACTGTTCCTCAG
BMWN1_0034_G11.b : gacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgACTGTTCCTCAG
BMWN1_0080_C08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgcccACTGTTCCTCAG
ILNT1_0057_B03.b : cxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgACTGTTCCTCAG
BMWN1_0044_C12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgcccACTGTCCCTTAA
BMWN1_0007_C04.b : ttttanggagagtxxxxxxxxxxxxxxxxxx
BMWN1_0035_G07.b : nttcgcaggtacacgccntaxxxxxxx
20110601C-014252 : GACTTCTGTGGACCAGAACCCTTCCCGCCCCCAGTCCACCATG*GCCCCTCCAGGCGGCA
---------+---------+---------+---------+---------+---------+ 116
ILNT1_0037_H04.b : GACTTCTGTGGACCAGAACCCTTCCCGCCCCCAGCCCACCATG*GCCCCTCCAGGCGGCA
BMWN1_0034_G11.b : GACTTCTGTGGACCAGAACCCTTCCCGCCCCCAGTCCACCATG*GCCCCTCCAGGCGGCA
BMWN1_0080_C08.b : GACTTCTGTGGACCAGAACCCTTCCCGCCCCCAGTCCACCATG*GCCCCTCCAGGCGGCA
ILNT1_0057_B03.b : GACTTCTGTGGACCAGAACCCTTCCCGCCCCCAGCCCACCATG*GCCCCTCCAGGCGGCA
BMWN1_0044_C12.b : GACTTCTGTGGACCAGAACCCTTCCCGCCCCCAGTCCACCATG*GCCCCTCCAGGCGGCA
BMWN1_0007_C04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgAGTCCACCATG*GCCCCTCCAGGCGGCA
BMWN1_0035_G07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgAGTCCACCCTGTGCCCCTCCAGGCGGCA
20110601C-014252 : TCCTGTTCCTGCTTTTGCTCCCAGTGGCTGCAGCGCAGGTGACCTCAGGTTCCTGTTCCG
---------+---------+---------+---------+---------+---------+ 176
ILNT1_0037_H04.b : TCCTGTTCCTGCTTTTGCTCCCAGTGGCTGCAGCGCAGGTGACCTCAGGTTCCTGTTCCG
BMWN1_0034_G11.b : TCCTGTTCCTGCTTTTGCTCCCAGTGGCTGCAGCGCAGGTGACCTCAGGTTCCTGTTCCG
BMWN1_0080_C08.b : TCCTGTTCCTGCTTTTGCTCCCAGTGGCTGCAGCGCAGGTGACCTCAGGTTCCTGTTCCG
ILNT1_0057_B03.b : TCCTGTTCCTGCTTTTGCTCCCAGTGGCTGCAGCGCAGGTGACCTCAGGTTCCTGTTCCG
BMWN1_0044_C12.b : TCCTGTTCCTGCTTTTGCTCCCAGTGGCTGCAGCGCAGGTGACCTCAGGTTCCTGTTCCG
BMWN1_0007_C04.b : TCCTGTTCCTGCTTTTGCTCCCAGTGGCTGCAGCGCAGGTGACCTCAGGTTCCTGTTCCG
BMWN1_0035_G07.b : TCCTGTTCCTGCTTTTGCTCCCAGTGGCTGCAGCGCAGGTGACCTCAGGTTCCTGTTCCG
20110601C-014252 : GATGTGGGCCCCTCTCCCTGCCACTCCTAGCAGGCCTCGTGGCCGCTGATGCAGTTGTGT
---------+---------+---------+---------+---------+---------+ 236
ILNT1_0037_H04.b : GATGTGGGCCCCTCTCCCTGCCACTCCTAGCAGGCCTCGTGGCCGCTGATGCAGTTGTGT
BMWN1_0034_G11.b : GATGTGGGCCCCTCTCCCTGCCACTCCTAGCAGGCCTCGTGGCCGCTGATGCAGTTGTGT
BMWN1_0080_C08.b : GATGTGGGCCCCTCTCCCTGCCACTCCTAGCAGGCCTCGTGGCCGCTGATGCAGTTGTGT
ILNT1_0057_B03.b : GATGTGGGCCCCTCTCCCTGCCACTCCTAGCAGGCCTCGTGGCCGCTGATGCAGTTGTGT
BMWN1_0044_C12.b : GATGTGGGCCCCTCTCCCTGCCACTCCTAGCAGGGGGCGTGGCCGCTGATGCAGTTGTGT
BMWN1_0007_C04.b : GATGTGGGCCCCTCTCCCTGCCACTCCTAGCAGGCCTCGTGGCCGCTGATGCAGTTGTGT
BMWN1_0035_G07.b : GATGTGGGCCCCTCTCCCTGCCACTCCTAGCAGGCCTCGTGGCCGCTGATGCAGTTGTGT
20110601C-014252 : CACTGTTAATCGTGGTGGGGGTATGTGTGTGCGGACGCCCACGCAGCAGGCCCACCCAAG
---------+---------+---------+---------+---------+---------+ 296
ILNT1_0037_H04.b : CACTGTTAATCGTGGTGGGGGTATTTGTGTGCGGACGCCCACGCAGCAGGCCCACCCAAG
BMWN1_0034_G11.b : CACTGTTAATCGTGGTGGGGGTATGTGTGTGCGGACGCCCACGCAGCAGGCCCACCCAAG
BMWN1_0080_C08.b : CACTGTTAATCGTGGTGGGGGTATGTGTGTGCGGACGCCCACGCAGCAGGCCCACCCAAG
ILNT1_0057_B03.b : CACTGTTAATCGTGGTGGGGGTATTTGTGTGCGGACGCCCACGCAGCAGGCCCACCCAAG
BMWN1_0044_C12.b : CACTGTTAATCGTGGTGGGGGTATGTGTGTGCGGACGCCCACGCAGCAGGCCCACCCAAG
BMWN1_0007_C04.b : CACTGTTAATCGTGGTGGGGGTATGTGTGTGCGGACGCCCACGCAGCAGGCCCACCCAAG
BMWN1_0035_G07.b : CACTGTTAATCGTGGTGGGGGTATGTGTGTGCGGACGCCCACGCAGCAGGCCCACCCAAG
20110601C-014252 : AAGACGGCAAAATCTACATCAACATGCCGGGCAGGGGCTGACCCCGCTGTAAGCCGTTAC
---------+---------+---------+---------+---------+---------+ 356
ILNT1_0037_H04.b : AAGACGGCAAAATCTACATCAACATGCCGGGCAGGGGCTGACCCCGCTATAAGCCGTTAC
BMWN1_0034_G11.b : A***CGGCAAAATCTACATCAACATGCCGGGCAGGGGCTGACCCCGCTGTAAGCCGTTAC
BMWN1_0080_C08.b : AAGACGGCAAAATCTACATCAACATGCCGGGCAGGGGCTGACCCCGCTGTAAGCCGTTAC
ILNT1_0057_B03.b : AAGACGGCAAAATCTACATCAACATGCCGGGCAGGGGCTGACCCCGCTATAAGCCGTTAC
BMWN1_0044_C12.b : AAGACGGCAAAATCTACATCAACATGCCGGGCAGGGGCTGACCCCGCTGTAAGCCGTTAC
BMWN1_0007_C04.b : AAGACGGCAAAATCTACATCAACATGCCGGGCAGGGGCTGACCCCGCTGTAAGCCGTTAC
BMWN1_0035_G07.b : AAGACGGCAAAATCTACATCAACATGCCGGGCAGGGGCTGACCCCGCTGTAAGCCGTTAC
20110601C-014252 : CTGCAACCTTTGACTCCTGACCCTCCCATCCCAGATTGTGTGTGGCGGCACAGGAAACTG
---------+---------+---------+---------+---------+---------+ 416
ILNT1_0037_H04.b : CTGCAACCTTTGACTCCTGACCCTCCCATCCCTGATTGTGTGTGGCGGCACAGGAAACTG
BMWN1_0034_G11.b : CTGCAACCTTTGACTCCTGACCCTCCCATCCCAGATTGTGTGTGGCGGCACAGGAAACTG
BMWN1_0080_C08.b : CTGCAACCTTTGACTCCTGACCCTCCCATCCCAGATTGTGTGTGGCGGCACAGGAAACTG
ILNT1_0057_B03.b : CTGCAACCTTTGACTCCTGACCCTCCCATCCCTGATTGTGTGTGGCGGCACAGGAAACTG
BMWN1_0044_C12.b : CTGCAACCTTTGACTCCTGACCCTCCCATCCCAGATTGTGTGTGGCGGCACAGGAAACTG
BMWN1_0007_C04.b : CTGCAACCTTTGACTCCTGACCCTCCCATCCCAGATTGTGTGTGGCGGCACAGGAAACTG
BMWN1_0035_G07.b : CTGCAACCTTTGACTCCTGACCCTCCCATCCCAGATTGTGTGTGGCGGCACAGGAAACTG
20110601C-014252 : GCCCCTCTTGGGGATTGGAATAAAGTCTTTGAAATACCAAAAAAAAAAAAAAAAAAAAAA
---------+---------+---------+---------+---------+---------+ 476
ILNT1_0037_H04.b : GCCCCTCTTGGGGATTGGAATAAAGTCTTTGAAATACCAAAAAAAAAAA
BMWN1_0034_G11.b : GCCCCTCTTGGGGATTGGAATAAAGTCTTTGAAATAaaaaaaaaa
BMWN1_0080_C08.b : GCCCCTCTTGGGGATTGGAATAAAGTCTTTGAAATACCAAAA
ILNT1_0057_B03.b : GCCCCTCTTGGGGATTGGAATAAAGTCTTTGAAATACCaaaaaaaaaaaaaaaaaaaaaa
BMWN1_0044_C12.b : GCCCCTCTTGGGGATTGGAATAAAGTCTTTGAAATACCaaaaaaaaaaaaaaaaaaaaaa
BMWN1_0007_C04.b : GCCCCTCTTGGGGATTGGAATAAAGTCTTTGAAATACAAAAAAAAAAAAA
BMWN1_0035_G07.b : GCCCCTCTTGGGGATTGGAATAAAGTCTTTGAAATACCaaaaaaaaaaaaaaaaaaaaaa
20110601C-014252 : AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGTGCCCCGGGCCC
---------+---------+---------+---------+---------+---------+ 536
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaa
BMWN1_0044_C12.b : aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaNGTGCCCCGGGCCC
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : aaaaaaaaaaaaaaataaaaaaaaaaaaataaaaaaaataaaaaaattaattaaaaaaaa
20110601C-014252 : CCAATTCCCCTTTGGGGGGGGTTTATTGGCCCCAAAACATAAAAAAACCCTTGGGGGGTT
---------+---------+---------+---------+---------+---------+ 596
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : aaggatatcagaggggggggggcgcccggattttccttttagggggggttttttggaccc
BMWN1_0044_C12.b : CCAATTCCCCTTTGGGGGGGGTTTATTGGCCCCAAAACATAAAAAAACCCTTGGGGGGTT
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : aaattattttggccggggcgcgtaaccccccttttgggggggttttttggcccccaaaac
20110601C-014252 : GGGAAAACCCCCCCCCAAAAGGGCGGAAAAAAAATCCTTTTTTTTAAAAATTTGGAAACC
---------+---------+---------+---------+---------+---------+ 656
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : aacaaaaaaaaaaacctttgtgagtggggaaaaacccccccatcggcggggttggaaaaa
BMWN1_0044_C12.b : GGGAAAACCCCCCCCCAAAAGGGCGGAAAAAAAATCCTTTTTTTTAAAAATTTGGAAACC
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : taaaaaaattttttttgtgtttggaccaccccacacttttagcggggaaaaagaattttt
20110601C-014252 : CTTTTCTTTTTTTTAAAACATTTAAACCCCGAAAAAAAACATTTCAAAACCCACTTTGCT
---------+---------+---------+---------+---------+---------+ 716
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : actttttttttttgtgaatttagagaggcccttttttttttgtaaaacattaaaagccca
BMWN1_0044_C12.b : CTTTTCTTTTTTTTAAAACATTTAAACCCCGAAAAAAAACATTTCAAAACCCACTTTGCT
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : tttttagaaaaatgtgaaggccccttccttttttaccccacttaatgcctcgcaaaaaac
20110601C-014252 : TTTTTTTTTTTTTTCAGGTTTCGGGGGAGGGTGGGGAGTTTTTTTCCCCATAAAAAAACC
---------+---------+---------+---------+---------+---------+ 776
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : caaaaaaatataaaaaaaattgtgttttttttttttatttttccagtctgagggggaggg
BMWN1_0044_C12.b : TTTTTTTTTTTTTTCAGGTTTCGGGGGAGGGTGGGGAGTTTTTTTCCCCATAAAAAAACC
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : atattaccaacacgtcttgtctctttttttttttctccagcgcgggggggggggggggag
20110601C-014252 : CCCCCCCC....................................................
---------+---------+---------+---------+---------+---------+ 784
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : gggagagttttttccccaaaaaaaaaaccccacaccccccgagaaaaacttttttatttt
BMWN1_0044_C12.b : CCCCCCCCcggggaaaaagcgttttcttttttggggcccctttccccttctccccacaaa
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : tttttttttttctataaaaaatcccccccccccgccggggaaggaggtttttaatatgga
20110601C-014252 : ............................................................
---------+---------+---------+---------+---------+---------+ 784
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : tgggggctctcctccacacccaccaaattgacaacgcgtcgaagatattatagggggggg
BMWN1_0044_C12.b : aaaacccccccccctgtttttttggcccggcggagagggtttccccccctcccaaggggg
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : tcctctttcctccttcttcaataaaaaatttccttccctttaattttttgtcttcgggca
20110601C-014252 : ............................................................
---------+---------+---------+---------+---------+---------+ 784
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : aaaggtatttctccctctaaaggagggtaatattaattttgccaagatgagggaaaatac
BMWN1_0044_C12.b : gtaaatttgtttcccccacaaagcgggggaaaccccagaaaaaaacatttgaacaaaagc
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : aaattattttttcccttaaaagggggtagtattactttctactcaaatagtggggaaaca
20110601C-014252 : ............................................................
---------+---------+---------+---------+---------+---------+ 784
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : gaaaaaaaatttttgtgtgaattgcgacctaaaagccaataataaaaataagcccccttt
BMWN1_0044_C12.b : gccaaaaaaacgccccaaacactaaaaaaggcccgcgtgtggggttttttttaaaaaggc
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : cccaaaatataatttctataattaacgctctacctttcctctactactatattaaggggc
20110601C-014252 : ............................................................
---------+---------+---------+---------+---------+---------+ 784
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : gaggtattattaaaaaggatacaccggaagaaatgaggaataaatagcgctataataaaa
BMWN1_0044_C12.b : ccccccccccaaaaaaaaatcaaaaaaatcacccccccttacttaaagggtggcaaaccc
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : tcgtttgtttgttttttttataattacccccctccccttgagaaatataaaaatatcccc
20110601C-014252 : ............................................................
---------+---------+---------+---------+---------+---------+ 784
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : gggggcacacctgaggagagtaaaaaaaattgcctttctaatgaagacactatggtcgtt
BMWN1_0044_C12.b : ccggggaaaataaaaaaaccggggtcttccccccagaaaaaaccccacgggccctcctct
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : tttctattaggggtgtgcccaccccgcttatttataaaaatatctggtttttcctctgaa
20110601C-014252 : ............................................................
---------+---------+---------+---------+---------+---------+ 784
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : gtattatatcattgagcgtntaaaaaatatttctcttatattattaaaattttgagatat
BMWN1_0044_C12.b : tttccacaccccgccctaagaaaaaaacggcccccttcttctcctacggggaagggggcc
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : aatccttatgacatcttttttgtacaaccttttatataagaaataatgttctcttttccc
20110601C-014252 : ............................................................
---------+---------+---------+---------+---------+---------+ 784
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : taacggtcatagaaatttatggcagttaagggcccacagcggttcaggaaagaaattcta
BMWN1_0044_C12.b : cttttttaaaccccccggcgggaaacctcctcgggggggggccaccccaacccatggcgg
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : cgtagaaagagggtctctctactaccccgcactatattactctagggaggaggtttcccc
20110601C-014252 : ............................................................
---------+---------+---------+---------+---------+---------+ 784
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : aatcacaaatgacgctctagattatgtcgatatcaccggaaaaaatcgcatatgaagaat
BMWN1_0044_C12.b : gtgaacacaaccaccctttaccacccacgcgcctctttagaataaaaatagttgggacac
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : caaagggttgtataatacactctttactacatctgtctttttatttataattttgctacc
20110601C-014252 : ............................................................
---------+---------+---------+---------+---------+---------+ 784
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b : cactagataataataaagaagaatatcggagaaaaaagataagagaccacaaacag
BMWN1_0044_C12.b : acccgaaagaaacatttatctctacgtcacccccttgtaaagaaatatcaacgcgggatg
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : cctgaaagataatattcctcccacaccctcctgtaaaaatacataattgtgtattggtct
20110601C-014252 : ............................................................
---------+---------+---------+---------+---------+---------+ 784
ILNT1_0037_H04.b :
BMWN1_0034_G11.b :
BMWN1_0080_C08.b :
ILNT1_0057_B03.b :
BMWN1_0044_C12.b : g
BMWN1_0007_C04.b :
BMWN1_0035_G07.b : ttataacttggacgctatccctattataaaaattctttttctcctg