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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-016853

Length: 843

Sequence:  [FASTA format sequence]
GCTTTTATGA TTTAACGTTA CTGTGTAAGT ACTTTCCCAC ATTGCTACAC TTGCTTGGTG
GTTCTCATGG AAATTCCATT TTCCATGATC TTGACATTCT GGCTGGTGTT TCTGTCATCG
TCGACTCTGG CTTTCTGTTA CCTGAGTCAG GGTGTCTCTC CGGTCTGAGC TCTCGATCAC
ACTTAGCTTT CCTCTTGCAT GTCCTGTGTC AAGCAGCTTC TTCTTCGTCC ACTCTTGTGA
AACCTTCTGA CCGGAGGCTG CTACAGCCTT GCCACTTCCT TTACGGGGCT CAAGCCCCCT
CACACCCGTC ATGCTCACTA GTACCCGATC ATCCTCTGCC CGGGAGTGCC ACCCCAGTTA
ACTGCCCAGG GATTCCGTCT CCACCAAAGA GCCTCTGCAA ACCCTGCCTC CTGGAAAAAC
CTCTTCCCTA TTGGTAATCC ATGAATGCTA AGATGCATTG TAGATATAAT TTATATTCAC
GGCCATTTAT GCCCTGCCTT ATGTAGGCAG TTCAGCACCA AGGAGAGTGC CTGTTTGCTT
TTGCTTGGGT GCAAGGTCAG TGGAGGATTT ACTGTGTTTA GGGCTCTGTA GTGCTGTTGG
CACGATGTAA TTTTTCCATA ATAGATGAAA AGCCAAACCC TGTATAAACA CACTTTAATA
ATGGTGAAGG CACTGGCAGA GTTGTGTGCC GAGGAAATAT TAAAGTTCAC ACTCCTGTAG
CTTAGACTTA ATTGAAGCCA GTAGTCTTCG TATTTACATT TGGGTTGTTT GTTTGAATGT
CAGACCTGGA GTGCTTCATC AGATGTCTTC CACTCCTCTA CGTATAACTG CTTTAACCAC
CTG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20110601C-016853 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SPL01_0053_F09.b : nnnnggcattgtactaagacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPL01_0053_F08.b :   nnnttgctaggactatnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-016853 : ......................GCTTTTATGATTTAACGTTACTGTGTAAGTACTTTCCC
                   ---------+---------+---------+---------+---------+---------+ 38
SPL01_0053_F09.b : xxxxxxxxxxxxxxxxxxxxxxGCTTTTATGATTTAACGTTACTGTGTAAGTACTTTCCC
SPL01_0053_F08.b : xxxxxxxxxxxxxxxxxxxxxxGCTTTTATGATTTAACGTTACTGTGTAAGTACTTTCCC


20110601C-016853 : ACATTGCTACACTTGCTTGGTGGTTCTCATGGAAATTCCATTTTCCATGATCTTGACATT
                   ---------+---------+---------+---------+---------+---------+ 98
SPL01_0053_F09.b : ACATTGCTACACTTGCTTGGTGGTTCTCATGGAAATTCCATTTTCCATGATCTTGACATT
SPL01_0053_F08.b : ACATTGCTACACTTGCTTGGTGGTTCTCATGGAAATTCCATTTTCCATGATCTTGACATT


20110601C-016853 : CTGGCTGGTGTTTCTGTCATCGTCGACTCTGGCTTTCTGTTACCTGAGTCAGGGTGTCTC
                   ---------+---------+---------+---------+---------+---------+ 158
SPL01_0053_F09.b : CTGGCTGGTGTTTCTGTCATCGTCGACTCTGGCTTTCTGTTACCTGAGTCAGGGTGTCTC
SPL01_0053_F08.b : CTGGCTGGTGTTTCTGTCATCGTCGACTCTGGCTTTCTGTTACCTGAGTCAGGGTGTCTC


20110601C-016853 : TCCGGTCTGAGCTCTCGATCACACTTAGCTTTCCTCTTGCATGTCCTGTGTCAAGCAGCT
                   ---------+---------+---------+---------+---------+---------+ 218
SPL01_0053_F09.b : TCCGGTCTGAGCTCTCGATCACACTTAGCTTTCCTCTTGCATGTCCTGTGTCAAGCAGCT
SPL01_0053_F08.b : TCCGGTCTGAGCTCTCGATCACACTTAGCTTTCCTCTTGCATGTCCTGTGTCAAGCAGCT


20110601C-016853 : TCTTCTTCGTCCACTCTTGTGAAACCTTCTGACCGGAGGCTGCTACAGCCTTGCCACTTC
                   ---------+---------+---------+---------+---------+---------+ 278
SPL01_0053_F09.b : TCTTCTTCGTCCACTCTTGTGAAACCTTCTGACCGGAGGCTGCTACAGCCTTGCCACTTC
SPL01_0053_F08.b : TCTTCTTCGTCCACTCTTGTGAAACCTTCTGACCGGAGGCTGCTACAGCCTTGCCACTTC


20110601C-016853 : CTTTACGGGGCTCAAGCCCCCTCACACCCGTCATGCTCACTAGTACCCGATCATCCTCTG
                   ---------+---------+---------+---------+---------+---------+ 338
SPL01_0053_F09.b : CTTTACGGGGCTCAAGCCCCCTCACACCCGTCATGCTCACTAGTACCCGATCATCCTCTG
SPL01_0053_F08.b : CTTTACGGGGCTCAAGCCCCCTCACACCCGTCATGCTCACTAGTACCCGATCATCCTCTG


20110601C-016853 : CCCGGGAGTGCCACCCCAGTTAACTGCCCAGGGATTCCGTCTCCACCAAAGAGCCTCTGC
                   ---------+---------+---------+---------+---------+---------+ 398
SPL01_0053_F09.b : CCCGGGAGTGCCACCCCAGTTAACTGCCCAGGGATTCCGTCTCCACCAAAGAGCCTCTGC
SPL01_0053_F08.b : CCCGGGAGTGCCACCCCAGTTAACTGCCCAGGGATTCCGTCTCCACCAAAGAGCCTCTGC


20110601C-016853 : AAACCCTGCCTCCTGGAAAAACCTCTTCCCTATTGGTAATCCATGAATGCTAAGATGCAT
                   ---------+---------+---------+---------+---------+---------+ 458
SPL01_0053_F09.b : AAACCCTGCCTCCTGGAAAAACCTCTTCCCTATTGGTAATCCATGAATGCTAAGATGCAT
SPL01_0053_F08.b : AAACCCTGCCTCCTGGAAAAACCTCTTCCCTATTGGTAATCCATGAATGCTAAGATGCAT


20110601C-016853 : TGTAGATATAATTTATATTCACGGCCATTTATGCCCTGCCTTATGTAGGCAGTTCAGCAC
                   ---------+---------+---------+---------+---------+---------+ 518
SPL01_0053_F09.b : TGTAGATATAATTTATATTCACGGCCATTTATGCCCTGCCTTATGTAGGCAGTTCAGCAC
SPL01_0053_F08.b : TGTAGATATAATTTATATTCACGGCCATTTATGCCCTGCCTTATGTAGGCAGTTCAGCAC


20110601C-016853 : CAAGGAGAGTGCCTGTTTGCTTTTGCTTGGGTGCAAGGTCAGTGGAGGATTTACTGTGTT
                   ---------+---------+---------+---------+---------+---------+ 578
SPL01_0053_F09.b : CAAGGAGAGTGCCTGTTTGCTTTTGCTTGGGTGCAAGGTCAGTGGAGGATTTACTGTGTT
SPL01_0053_F08.b : CAAGGAGAGTGCCTGTTTGCTTTTGCTTGGGTGCAAGGTCAGTGGAGGATTTACTGTGTT


20110601C-016853 : TAGGGCTCTGTAGTGCTGTTGGCACGATGTAATTTTTCCATAATAGATGAAAAGCCAAAC
                   ---------+---------+---------+---------+---------+---------+ 638
SPL01_0053_F09.b : TAGGGCTCTGTAGTGCTGTTGGCACGATGTAATTTTTCCATAATAGATGAAAAGCCAAAC
SPL01_0053_F08.b : TAGGGCTCTGTAGTGCTGTTGGCACGATGTAATTTTTCCATAATAGATGAAAAGCCAAAC


20110601C-016853 : CCTGTATAAACACACTTTAATAATGGTGAAGGCACTGGCAGAGTTGTGTGCCGAGGAAAT
                   ---------+---------+---------+---------+---------+---------+ 698
SPL01_0053_F09.b : CCTGTATAAACACACTTTAATAATGGTGAAGGCACTGGCAGAGTTGTGTGCCGAGGAAAT
SPL01_0053_F08.b : CCTGTATAAACACACTTTAATAATGGTGAAGGCACTGGCAGAGTTGTGTGCCGAGGAAAT


20110601C-016853 : ATTAAAGTTCACACTCCTGTAGCTTAGACTTAATTGAAGCCAGTAGTCTTCGTATTTACA
                   ---------+---------+---------+---------+---------+---------+ 758
SPL01_0053_F09.b : ATTAAAGTTCACACTCCTGTAGCTTAGACTTAATTGAAGCCAGTAGTCTTCGTATTTACA
SPL01_0053_F08.b : ATTAAAGTTCACACTCCTGTAGCTTAGACTTAATTGAAGCCAGTAGTCTTCGTATTTACA


20110601C-016853 : TTTGGGTTGTTTGTTTGAATGTCAGACCTGGAGTGCTTCATCAGATGTCTTCCACTCCTC
                   ---------+---------+---------+---------+---------+---------+ 818
SPL01_0053_F09.b : TTTGGGTTGTTTGTTTGAATGTCAGACCTGGAGTGCTTCATCAGATGTCTTCCACTCCTC
SPL01_0053_F08.b : TTTGGGGTGTTTGTTTGAATGTCAGACCTGGAGTGCTTCATCAGATGTCTTCCACTCCTC


20110601C-016853 : TACGTATAACTGCTTTAACCACCTG...................................
                   ---------+---------+---------+---------+---------+---------+ 843
SPL01_0053_F09.b : TACGTATAACTGCTTaaacacctgccccaggattccctttggtctctatcttggctcccg
SPL01_0053_F08.b : TACGTATAACTGCTTTAACCACCTGcgnccaggattcccctttggtctctatcttgtctc


20110601C-016853 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 843
SPL01_0053_F09.b : gcccagggaccgagtcgcattttcccttgtgtgccctggacatcctgacatggtgcctgg
SPL01_0053_F08.b : cgggcccagggacagaagtcgcatttttcttttgtgtgccttggacttccctgacatggt


20110601C-016853 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 843
SPL01_0053_F09.b : cttcctttgctccaattatctctagggctgagaggcacagattcctcattacctgttgcc
SPL01_0053_F08.b : gcctggccttcccttgctccgcattaactccaaggctgaaaaggaaaaaattcctcatta


20110601C-016853 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 843
SPL01_0053_F09.b : ttcctgacccaaaaaaaaaaaaaaaaaaaaggccccatgtgccc               
SPL01_0053_F08.b : actgtttgcttccctgaccaaaaaaaaaaaaaaaaaaaaaaaggccccactgtgcctcaa


20110601C-016853 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 843
SPL01_0053_F09.b :                                                             
SPL01_0053_F08.b : acctgcaagtc