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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20110601S-098943

Length: 1,112

Sequence:  [FASTA format sequence]
NNNGGTGXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXACTTTC
TCTTTGTCGG AGGAGCTCCG CTGTTTCCTG TGCTGTAGCT CCCGTTGCGG CGGCGCCCGT
GGCAGCCCTG GCGGACGCAG GAGCGATGGC AGCGACCGAT ATAGCTCGCC AGGTGGGTGA
AGGTTGCCGA ACTGTCCCCC TGGCTGGACA TGTGGGGTTT GACAGCTTGC CCGACCAGCT
GGTGAATAAG TCAGTCAGCC AGGGCTTCTG CTTCAACATC CTGTGCGTGG GAGAGACAGG
TTTGGGCAAG TCCACCCTTA TGGACACCCT GTTCAACACC AAGTTCGAGG GGGAGCCAGC
CACCCATACA CAGCCAGGTG TCCAGCTCCG GTCCAATACC TATGACCTTC AAGAGAGCAA
CGTGGGCCTG AAGCTCACCA TCGTTAGCAC AGTGGGCTTC GGGGATCAGA TCAACAAGGA
AGACAGCTAC AAGCCCATCG TGGAATTCAT CGACGCCCAA TTTGAGGCCT ATCTGCAGGA
GGAGCTGAAG ATCCGCAGGG TACTGCACAC CTACCACGAC TCCCGCATCC ACGCCTGCTT
GTACTTCATC GCCCCCACGG GTCACTCCTT GAAGTCTCTG GACCTAGTGA CGATGAAGAA
GCTGGACAGT AAGGTGAACA TCATCCCCAT CATTGCCAAA TCGGATGCCA TTTCTAAGAG
TGAGCTAACG AAGTTCAAAA TCAAAATCAC CAGCGAGCTT GTCAGCAACG GAGTCCAGAT
CTACCAGTTC CCCACAGATG ATGAGTCGGT GGCAGAGATC AATGGAACCA TGAACGCCCA
CCTGCCGTTT GCCGTCATTG GCAGCACAGA GGAGCTGAAG ATAGGCAACA AGATGATGAA
GGCGCGGCAG TACCCCTGGG GCACGGTGCA GGTTTGAAAT GAAGCCCACT GCGACTTTCG
TCAGCTGCGG GAGATGCTGA TCCGGGTCAC ATGGAGGACC TCCGGGAGCA GAGCACAGCC
GGCACTATGA GCTGTACCGC GCTGTAGCTG GGAGAGATGG GCTTTCAGGA CACGACCCTG
ACAGCAACCT TCAGTTTACN GAGACGTATG AGCCAAAGGA TGAGTTCTAG GAAGCTCTNA
AAANGAGAAA AATGAGACGA TGTTCTCCGA AGTCAAAAAA GAACTGACTA AAAGCCAAAA
ACCTCCTGAA ATGACGCTCG AAACTCCCGA CAAAAAAACT GGGAAAAAAA TCTGTAACAA
GACCCTCACC AAAAAAGGGC ACGTTCCTCC GCTCCCGGGG TCACCAAAAA AAAAAAATTT
CGTTTGGGTA GAAGGTGGGG TTAAATTTTG AAAGGCCTTT TTTTATGGGG CCCCCTCCTT
CATTTAAAGA GGGGGGGGAG GGAGGCAAAN NNNNNNNNNN GGGGNNNNCT CTTTTTTGGC
CCGCCCCAAT CTNNNNNNNN NNNNNNNNTT GNNT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		SEPT6	septin-6 isoform A [Homo sapiens].	532	e-154	O
		SEPT6	septin-6 isoform B [Homo sapiens].	532	e-154	O
		SEPT6	septin-6 isoform D [Homo sapiens].	532	e-154	O
		SEPT6	septin-6 isoform A [Homo sapiens].	532	e-154	O
		SEPT11	septin-11 [Homo sapiens].	456	e-131	O
		SEPT8	septin-8 isoform a [Homo sapiens].	430	e-123	O
		SEPT8	septin-8 isoform c [Homo sapiens].	430	e-123	O
		SEPT8	septin-8 isoform b [Homo sapiens].	430	e-123	O
		SEPT10	septin-10 isoform 2 [Homo sapiens].	422	e-119	O
		SEPT10	septin-10 isoform 1 [Homo sapiens].	422	e-119	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Sept6	septin-6 isoform 1 [Mus musculus].	527	e-153	O
		Sept6	septin-6 isoform 2 [Mus musculus].	527	e-153	O
		Sept6	septin-6 isoform 3 [Mus musculus].	522	e-151	O
		Sept11	septin-11 [Mus musculus].	456	e-131	O
		Sept8	septin-8 [Mus musculus].	432	e-123	O
		Sept10	septin-10 isoform 1 [Mus musculus].	412	e-116	O
		Sept10	septin-10 isoform 2 [Mus musculus].	412	e-116	O
		Sept14	septin-14 [Mus musculus].	342	2e-95	O
		Sept9	septin-9 isoform b [Mus musculus].	236	2e-62
		Sept9	septin-9 isoform c [Mus musculus].	236	2e-62	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC612892	PREDICTED: similar to Septin-6 isoform 2 [Canis familiaris].	541	e-157	O
		LOC612892	PREDICTED: similar to Septin-6 isoform 1 [Canis familiaris].	541	e-157	O
		LOC612892	PREDICTED: similar to septin 6 isoform D isoform 5 [Canis familiaris].	541	e-157	O
		LOC612892	PREDICTED: similar to Septin-6 isoform 7 [Canis familiaris].	541	e-157	O
		LOC612892	PREDICTED: similar to Septin-6 isoform 6 [Canis familiaris].	541	e-157	O
		LOC612892	PREDICTED: similar to Septin-6 isoform 4 [Canis familiaris].	511	e-147	O
		LOC612892	PREDICTED: similar to Septin-6 isoform 3 [Canis familiaris].	511	e-145	O
		LOC478439	PREDICTED: similar to Septin-11 [Canis familiaris].	455	e-131	O
		LOC474677	PREDICTED: similar to Septin-8 [Canis familiaris].	430	e-122
		cOR4L4	PREDICTED: similar to septin 10 isoform 1 [Canis familiaris].	379	e-105	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		SEPT6	septin-6 [Bos taurus].	540	e-157	O
		SEPT11	septin-11 [Bos taurus].	456	e-131	O
		SEPT8	septin-8 [Bos taurus].	430	e-123	O
		SEPT10	septin-10 [Bos taurus].	426	e-120	O
		SEPT14	septin-14 [Bos taurus].	365	e-101	O
		SEPT9	PREDICTED: OVARIAN/Breast septin gamma-like [Bos taurus].	236	4e-62
		SEPT9	PREDICTED: septin 9 [Bos taurus].	236	4e-62
		SEPT7	septin-7 [Bos taurus].	228	6e-60	O
		SEPT5	septin-5 [Bos taurus].	223	2e-58	O
		SEPT3	neuronal-specific septin-3 [Bos taurus].	218	1e-56	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100515873	PREDICTED: septin-6-like isoform 1 [Sus scrofa].	541	e-157	O
		LOC100515873	PREDICTED: septin-6-like isoform 2 [Sus scrofa].	541	e-157	O
		LOC100515873	PREDICTED: septin-6-like [Sus scrofa].	541	e-157	O
		LOC100515873	PREDICTED: septin-6-like isoform 3 [Sus scrofa].	541	e-157	O
		SEPT11	PREDICTED: septin-11 [Sus scrofa].	456	e-131	O
		SEPT8	PREDICTED: septin-8 [Sus scrofa].	430	e-123	O
		LOC100522986	PREDICTED: septin-10-like [Sus scrofa].	349	2e-96
		LOC100519083	PREDICTED: septin-14-like [Sus scrofa].	236	1e-62	O
		LOC100621037	PREDICTED: septin-9-like [Sus scrofa].	234	6e-62
		LOC100523875	PREDICTED: septin-7-like [Sus scrofa].	228	4e-60	O