[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20060611C-000169
Length:
1,152
Sequence:
[FASTA format sequence]
CTCTGGATCA TTGCTCTACA ACTCCGAAGA GCAAGAGCTG AGACCACCTT GAGAAGAGCA
TGGTCCCAGG CCGAGTTCTG ATGTGGGGGG CCCTCGCCCT GACCACCGTG ATGAGCGCCT
GTGGAGCCGA CCATGTTGCC TCCTATGGCT TAAATGTCTA CCAGTCTTAC GGTCCCAGCG
GCTATTTTAC CCATGAATTT GATGGCGACG AGGAATTCTA CGTGGACCTG GAGAAGAAGG
AGACTGTCTG GCGGCTGCCT CTGTTTAGTG AATTTACAAG TTTTGACCCG CAGGGTGCAC
TGAGGAATAT AGCTACGTTA AAACATAACT TGAACATCGT GACTAAACGC TCCAACAACA
CCGCGGCTGT CAATCAGGTT CCTGAGGTGA CTGTGTTTTC CAAGTCTCCA GTGATACTGG
GTCAGCCCAA CACCCTCATC TGTCATGTGG ACAGCATCTT TCCTCCTGTG ATCAACATCA
CGTGGTTGAA GAACGGGCAC TCTGTCAAAG GTTTTTCTGA GACCAGCTTC CTCTCCAAAA
ATGATCATTC CTTCCTCAAG ATCAGTTATC TCACCTTCCT CCCTTCTGAT GATGATTTTT
ATGACTGCAA AGTGGAGCAC TGGGGCCTGG ATAAGCCACT TCTGAAACAC TGGGAACCTG
AGATTCCAGC CCCCATGTCA GAGCTGACAG AGACTGTGGT CTGCGCCCTG NGATTGATCG
TGGGCCTTGT GGGCATCGTG GTGGGCACTG TCTTCATCAT TCAAGGCCTG CGCTCAGGTG
GTCCCTCTAG ACACCANGGG TCCTTGTGAG TCACACTCCA GAAGGGAAGG AGCACTGCCC
GCCTANCAGA GCTGAAGAGT GGATGTGCTC AACGACCTAG AACTATTTTC TGGCCAAATT
CATCATATAC CTTCTCTCTT CCTACATTCT TCTTTCTCAC TCTTCTCTGG AACTAAAGGT
GCTGTGTCAT CTCAGAATCC TATGCCCTTG GGATCCTCTT CCTGACCTTC TAGGTCTTTT
TCTTTTCTCA GTGTTACCTG TTATGGATCC CTGAAATATC CACTCGGCTA ACTGATCTTC
AGTGACCCTA ACTAATTTGT CCTGAAAACA ATAATCCTTC CGGAGGTTTT GTACTGGAAA
AAAAAAAAAA AA
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 367 | e-102 | O |
|
| LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 367 | e-102 | O |
|
| LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 367 | e-102 | O |
|
| LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 367 | e-102 | O |
|
| HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 351 | 6e-97 | O |
|
| HLA-DQA2 | major histocompatibility complex, class II, DQ alpha 2 | 349 | 3e-96 | O |
|
| HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 345 | 5e-95 | O |
|
| HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 345 | 5e-95 | O |
|
| HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 345 | 5e-95 | O |
|
| HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 345 | 5e-95 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20060611C-000169 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
TES01_0034_F05.b :
MLN01_0100_B06.b : ntcggccttgtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20060611C-000169 : ..............CTCTGGATCATTGCTCTACAACTCCGAAGAGCAAGAGCTGAGACCA
---------+---------+---------+---------+---------+---------+ 46
TES01_0034_F05.b : cacggtggCTCTGGATC*TTGCTCTACAACTCCGAAGAGCAAGAGCTGAGACCA
MLN01_0100_B06.b : xxxxxxxxxxxxxxxxxxxxxTCATTGCTCTACAACTCCGAAGAGCAAGAGCTGAGACCA
20060611C-000169 : CCTTGAGAAGAGCATGGTCCCAGGCCGAGTTCTGATGTGGGGGGCCCTCGCCCTGACCAC
---------+---------+---------+---------+---------+---------+ 106
TES01_0034_F05.b : CCTTGAGAAGAGCATGGTCCCAGGCCGAGTTCTGATGTGGGGGGCCCTCGCCCTGACCAC
MLN01_0100_B06.b : CCTTGAGAAGAGCATGGTCCCAGGCCGAGTTCTGATGTGGGGGGCCCTCGCCCTGACCAC
20060611C-000169 : CGTGATGAGCGCCTGTGGAGCCGACCATGTTGCCTCCTATGGCTTAAATGTCTACCAGTC
---------+---------+---------+---------+---------+---------+ 166
TES01_0034_F05.b : CGTGATGAGCGCCTGTGGAGCCGACCATGTTGCCTCCTATGGCTTAAATGTCTACCAGTC
MLN01_0100_B06.b : CGTGATGAGCGCCTGTGGAGCCGACCATGTTGCCTCCTATGGCTTAAATGTCTACCAGTC
20060611C-000169 : TTACGGTCCCAGCGGCTATTTTACCCATGAATTTGATGGCGACGAGGAATTCTACGTGGA
---------+---------+---------+---------+---------+---------+ 226
TES01_0034_F05.b : TTACGGTCCCAGCGGCTATTTTACCCATGAATTTGATGGCGACGAGGAATTCTGCGTGGA
MLN01_0100_B06.b : TTACGGTCCCAGCGGCTATTTTACCCATGAATTTGATGGCGACGAGGAATTCTACGTGGA
20060611C-000169 : CCTGGAGAAGAAGGAGACTGTCTGGCGGCTGCCTCTGTTTAGTGAATTTACAAGTTTTGA
---------+---------+---------+---------+---------+---------+ 286
TES01_0034_F05.b : CCTGGAGAAGAAGGAGACTGTCTGGCGGCTGCCTCTGTTTAGTGAATTTACAAGTTTTGA
MLN01_0100_B06.b : CCTGGAGAAGAAGGAGACTGTCTGGCGGCTGCCTCTGTTTAGTGAATTTACAAGTTTTGA
20060611C-000169 : CCCGCAGGGTGCACTGAGGAATATAGCTACGTTAAAACATAACTTGAACATCGTGACTAA
---------+---------+---------+---------+---------+---------+ 346
TES01_0034_F05.b : CCCGCAGGGTGCACTGAGGAATATAGCTACGTTAAAACATAACTTGAACATCGTGACTAA
MLN01_0100_B06.b : CCCGCAGGGTGCACTGAGGAATATAGCTACGTTAAAACATAACTTGAACATCGTGACTAA
20060611C-000169 : ACGCTCCAACAACACCGCGGCTGTCAATCAGGTTCCTGAGGTGACTGTGTTTTCCAAGTC
---------+---------+---------+---------+---------+---------+ 406
TES01_0034_F05.b : ACGCTCCAACAACACCGCGGCTGTCAATCAGGTTCCTGAGGTGACTGTGTTTTCCAAGTC
MLN01_0100_B06.b : ACGCTCCAACAACACCGCGGCTGTCAATCAGGTTCCTGAGGTGACTGTGTTTTCCAAGTC
20060611C-000169 : TCCAGTGATACTGGGTCAGCCCAACACCCTCATCTGTCATGTGGACAGCATCTTTCCTCC
---------+---------+---------+---------+---------+---------+ 466
TES01_0034_F05.b : TCCAGTGATACTGGGTCAGCCCAACACCCTCATCTGTCATGTGGACAGCATCTTTCCTCC
MLN01_0100_B06.b : TCCAGTGATACTGGGTCAGCCCAACACCCTCATCTGTCATGTGGACAGCATCTTTCCTCC
20060611C-000169 : TGTGATCAACATCACGTGGTTGAAGAACGGGCACTCTGTCAAAGGTTTTTCTGAGACCAG
---------+---------+---------+---------+---------+---------+ 526
TES01_0034_F05.b : TGTGATCAACATCACGTGGTTGAAAAACGGGCACTCTGTTCAAGGTTTTTCTGAAAACAG
MLN01_0100_B06.b : TGTGATCAACATCACGTGGTTGAAGAACGGGCACTCTGTCAAAGGTTTTTCTGAGACCAG
20060611C-000169 : CTTCCTCTCCAAAAA*TGATCATTCCTTCCTC*AAGATCAGTTATCTCACCTTCCTCCCT
---------+---------+---------+---------+---------+---------+ 584
TES01_0034_F05.b : CTTCCTCTCCAAAAAATGATCTTTCCTTCCTCCAAATTCAGTTATCTCACTTTCCTCCCC
MLN01_0100_B06.b : CTTCCTCTCCAAAAA*TGATCATTCCTTCCTC*AAGATCAGTTATCTCACCTTCCTCCCT
20060611C-000169 : *TCTGATGATGA*TTTTTATGACTGCAAAGTGGAGCACTGGGGCCTGGATAAGCCACTTC
---------+---------+---------+---------+---------+---------+ 642
TES01_0034_F05.b : CTCTGAGAAAGAATTTTTATGACTGCccaaatggaaccactgggggcctggaaaaacccc
MLN01_0100_B06.b : *TCTGATGATGA*TTTTTATGACTGCAAAGTGGAGCACTGGGGCCTGGATAAGCCACTTC
20060611C-000169 : TGAAACACTGGGAACCTGAGATTCCAGCCCCCATGTCAGAGCTGACAGAGACTGTGGTCT
---------+---------+---------+---------+---------+---------+ 702
TES01_0034_F05.b : cttctgaacactggggaacctgaaaattcctccccccctggtctaaactgaaaaaaaacg
MLN01_0100_B06.b : TGAAACACTGGGAACCTGAGATTCCAGCCCCCATGTCAGAGCTGACAGAGACTGTGGTCT
20060611C-000169 : GCGCCCTGNGATTGATCGTGGGCCTTGTGGGCATCGTGGTGGGCACTGTCTTCATCATTC
---------+---------+---------+---------+---------+---------+ 762
TES01_0034_F05.b : gggggtctgcccccccgggaattgaatgtggggcctttgtgggaaacccgggggggggaa
MLN01_0100_B06.b : GCGCCCTGNGATTGATCGTGGGCCTTGTGGGCATCGTGGTGGGCACTGTCTTCATCATTC
20060611C-000169 : AAGGCCTGCGCTCAGGTGGTCCCTCTAGACACCANGGGTCCTTGTGAGTCACACTCCAGA
---------+---------+---------+---------+---------+---------+ 822
TES01_0034_F05.b : ctttctttctttattttagggcctaggcccccggggggccccccttaaaaccccaagggg
MLN01_0100_B06.b : AAGGCCTGCGCTCAGGTGGTCCCTCTAGACACCANGGGTCCTTGTGAGTCACACTCCAGA
20060611C-000169 : AGGGAAGGAGCACTGCCCGCCTANCAGAGCTGAAGAGTGGATGTGCTCAACGACCTAGAA
---------+---------+---------+---------+---------+---------+ 882
TES01_0034_F05.b : tcctttgtggagtcccactccccaaaaggaaaggaaaaccttccccccccctaaaaaaaa
MLN01_0100_B06.b : AGGGAAGGAGCACTGCCCGCCTANCAGAGCTGAAGAGTGGATGTGCTCAACGACCTAGAA
20060611C-000169 : CTATTTTCTGGCCAAATTCATCATATACCTTCTCTCTTCCTACATTCTTCTTTCTCACTC
---------+---------+---------+---------+---------+---------+ 942
TES01_0034_F05.b : cctaaaaaattgggattttgtcccctacaccccacaaaaaaattttttttggggccaaat
MLN01_0100_B06.b : CTATTTTCTGGCCAAATTCATCATATACCTTCTCTCTTCCTACATTCTTCTTTCTCACTC
20060611C-000169 : TTCTCTGGAACTAAAGGTGCTGTGTCATCTCAGAATCCTATGCCCTTGGGATCCTCTTCC
---------+---------+---------+---------+---------+---------+ 1002
TES01_0034_F05.b : tctcctaaaaaacccttttctttcttcacaaatttttttttttcccccccctttttttgg
MLN01_0100_B06.b : TTCTCTGGAACTAAAGGTGCTGTGTCATCTCAGAATCCTATGCCCTTGGGATCCTCTTCC
20060611C-000169 : TGACCTTCTAGGTCTTTTTCTTTTCTCAGTGTTACCTGTTATGGATCCCTGAAATATCCA
---------+---------+---------+---------+---------+---------+ 1062
TES01_0034_F05.b : gaaaatttagggtggggggtgttccccccaaaaatatatattcccccggggaaaccccct
MLN01_0100_B06.b : TGACCTTCTAGGTCTTTTTCTTTTCTCAGTGTTACCTGTTATGGATCCCTGAAATATCCA
20060611C-000169 : CTCGGCTAACTGATCTTCAGTGACCCTAACTAATTTGTCCTGAAAACAATAATCCTTCCG
---------+---------+---------+---------+---------+---------+ 1122
TES01_0034_F05.b : tctccgaacaccttaaggggttttttttttttctcaaagttttccctttttttggggact
MLN01_0100_B06.b : CTCGGCTAACTGATCTTCAGTGACCCTAACTAATTTGTCCTGAAAACAATAATCCTTCCG
20060611C-000169 : GAGGTTTTGTACTGGAAAAAAAAAAAAAAA..............................
---------+---------+---------+---------+---------+---------+ 1152
TES01_0034_F05.b : cccagaaataaacccccctgggggttagaagttctcctcgtgggacgccttaataaatat
MLN01_0100_B06.b : GAGGTTTTGTACTGGaaaaaaaaaaaaaaaaaaaaaaaaaggcgcctggttttcaactgc
20060611C-000169 : ............................................................
---------+---------+---------+---------+---------+---------+ 1152
TES01_0034_F05.b : tttttgtgggggaaaatataaaaccccccctcgagggtttgtgttttgtcaaataaaaaa
MLN01_0100_B06.b : agttgggcccccttt
20060611C-000169 : ............................................................
---------+---------+---------+---------+---------+---------+ 1152
TES01_0034_F05.b : aaaaaaaaagaaaaaattcctattgcttttcttctcttttggtgccgcgcctcttttttt
MLN01_0100_B06.b :
20060611C-000169 : ............................................................
---------+---------+---------+---------+---------+---------+ 1152
TES01_0034_F05.b : tatataataaaaaattccctccctcctctccccgctgagtaaataaagaaaatatgttat
MLN01_0100_B06.b :
20060611C-000169 : ............................................................
---------+---------+---------+---------+---------+---------+ 1152
TES01_0034_F05.b : gttgttgttttattttg
MLN01_0100_B06.b :
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