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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20060611C-000324

Length: 1,089

Sequence [FASTA format sequence]
GCCAGGCTGT TGCTGAGCAC CCAGGATCGA GAAGAGGCAG AGGAAAGGGA AGCAGAGAGA
AGCAGCCAAG AGTTGGAGCC AGACCAGGAG GAGCCCGAGT GGAGTTGAAG TTCCTTTTGC
AGAGGCGGCA GCAAGTAAAG CAGTTGAAAC GATGCTGGCT GTCTTGGGAC TGCTCACCTC
CTTCCTTTTT TTTCCTGTAT GTGACAGCTC CATCCATCAG GAGCCCGAGT ATACATTGCC
TGCCGAGATG TACTGAAGGG GGAGTCTGCT GCCAGTGAAA TCCGAGCTGA TACAAAGAAC
TCCCAGGTGC TGGTGCGGAA ACTGGACCTC TCTGATACCA AATCCATCCG AGCCTCTGCT
GAGGGCTTTC TGACAGAGGA AAAGCAGCTC CATATTCTGA TCAACAATGC TGGAGTGATG
TTGTGTCCAT ATTCCAAGAC AGCGGATGGC TTTGAGACCC ACCTGGGAGT CAACCACCTG
GGCCACTTCC TTCTCACGCA CTTGCTCTTG GAGCAGCTGA AGGCATCTGC TCCCGCACGG
GTGGTGAACC TGTCATCCGT GGTCCACCAT GCTGGCAAGA TTCGCTTCCA CGACCTCCAG
GGTGAGAAGC ACTACAACCG GGGTTTTGCT TATTGCCACA GCAAGCTGGC CAACGTGCTC
TTTACTCGGG AACTGGCCAA GAGGCTCCAA GGCACGGGGG TCACCACGTA CGCAGTGCAC
CCAGGCATCG TCCAGTCTGA GCTGGTCCGG CATTCCTTCC TGCTGTGCCT GCTCTGGCGG
CTCTTCTCCC GCTTCCTCAA AACAGCGCGG GAGGGGGCCC AAACACAGCT GCACTGCGCC
CTGGCCGAGG GCCTGGAGCC CCTGAGCGGG CAGTACTTCA GTGACTGCAA AAGGGCCTGG
GTGTCCCAAG GGCCCCGAAA TACAAACGGC CGAGCGCTTG TGAACGTCAG CTGCGAGCTC
CTGGGAATCC AGTGGGAGTA GAGCTGCTGG AANATGCCCG GCTGTATTCA GCCTGGTCCA
GGCCATAACG CAAACGGGGA GATGCCCACC CCAAGGACTG ACTGGNTGGG TGCTGTCCCA
AAACTTCCC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)411e-115O
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)3362e-92O
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)1964e-50O
Contig/Assembly ProteinRDH13retinol dehydrogenase 13 (all-trans/9-cis)1763e-44O
Contig/Assembly ProteinMGC23280hypothetical protein MGC232801662e-41O
Contig/Assembly ProteinWWOXWW domain containing oxidoreductase1333e-31
Contig/Assembly ProteinDHRSXdehydrogenase/reductase (SDR family) X-linked1327e-31O
Contig/Assembly ProteinFLJ13639hypothetical protein FLJ1363963.53e-10O
Contig/Assembly ProteinFLJ13639hypothetical protein FLJ1363956.64e-08O
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 156.25e-08


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Members: 2      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
ADR010007F02ADR01_0007_F02.bDB782157 AK343240
ADR010092A11ADR01_0092_A11.bDB789638 

  

Alignment:      TOP

20060611C-000324 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
ADR01_0007_F02.b : nnnttgatgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0092_A11.b : nnccccttannnnnggagtaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20060611C-000324 : ...GCCAGGCTGTTGCTGAGCACCCAGGATCGAGAAGAGGCAGAGGAAAGGGAAGCAGAG
---------+---------+---------+---------+---------+---------+ 57
ADR01_0007_F02.b : xxxGCCAGGCTGTTGCTGAGCACCCAGGATCGAGAAGAGGCAGAGGAAAGGGAAGCAGAG
ADR01_0092_A11.b : xxxxxxxGGCTGTTGCTGAGCACCCAGGATCGAGAAGAGGCAGAGGAAAGGGGAGCAGAG
20060611C-000324 : AGAAGCAGCCAAGAGTTGGAGCCAGACCAGGAGGAGCCCGAGTGGAGTTGAAGTTCCTTT
---------+---------+---------+---------+---------+---------+ 117
ADR01_0007_F02.b : AGAAGCAGCCAAGAGTTGGAGCCAGACCAGGAGGAGCCCGAGTGGAGTTGAAGTTCCTTT
ADR01_0092_A11.b : AGAAGCAGCCAAGAGTTGGAGCCAGACCAGGAGGAGCCCGAGTGGAGTTGAAGTTCCTTT
20060611C-000324 : TGCAGAGGCGGCAGCAAGTAAAGCAGTTGAAACGATGCTGGCTGTCTTGGGACTGCTCAC
---------+---------+---------+---------+---------+---------+ 177
ADR01_0007_F02.b : TGCAGAGGCGGCAGCAAGTAAAGCAGTTGAAACGATGCTGGCTGTCTTGGGACTGCTCAC
ADR01_0092_A11.b : TGCAGAGGCGGCAGCAAGTAAAGCAGTTGAAACGATGCTGGCTGTCTTGGGACTGCTCAC
20060611C-000324 : CTCCTTCCTTTTTTTTCCTGTATGTGACAGCTCCATCCATCAGGAGCCCGAGTATACATT
---------+---------+---------+---------+---------+---------+ 237
ADR01_0007_F02.b : CTCCTTCCTTTTTTT*CCTGTATGTGACAGCTCCATCCATCAGGAGCCCGAGTATACATT
ADR01_0092_A11.b : CTCCTTCCTTTTTTTTCCTGTATGTGACAGCTCCATCCATCAGGAGCCCGAGTATACATT
20060611C-000324 : GCCTGCCGAGATGTACTGAAGGGGGAGTCTGCTGCCAGTGAAATCCGAGCTGATACAAAG
---------+---------+---------+---------+---------+---------+ 297
ADR01_0007_F02.b : GCCTGCCGAGATGTACTGAAGGGGGAGTCTGCTGCCAGTGAAATCCGAGCTGATACAAAG
ADR01_0092_A11.b : GCCTGCCGAGATGTACTGAAGGGGGAGTCTGCTGCCAGTGAAATCCGAGCTGATACAAAG
20060611C-000324 : AACTCCCAGGTGCTGGTGCGGAAACTGGACCTCTCTGATACCAAATCCATCCGAGCCTCT
---------+---------+---------+---------+---------+---------+ 357
ADR01_0007_F02.b : AACTCCCAGGTGCTGGTGCGGAAACTGGACCTCTCTGATACCAAATCCATCCGAGCCTTT
ADR01_0092_A11.b : AACTCCCAGGTGCTGGTGCGGAAACTGGACCTCTCTGATACCAAATCCATTCGAGCCTCT
20060611C-000324 : GCTGAGGGCTTTCTGACAGAGGAAAAGCAGCTCCATATTCTGATCAACAATGCTGGAGTG
---------+---------+---------+---------+---------+---------+ 417
ADR01_0007_F02.b : GCTGAGGGCTTTCTGACAGAGGAAAAGCAGCTCCATATTCTGATCAACAATGCTGGAGTG
ADR01_0092_A11.b : GCTGAGGGCTTTCTGACAGAGGAAAAGCAGCTCCATATTCTGATCAACAATGCTGGAGTG
20060611C-000324 : ATGTTGTGTCCATATTCCAAGACAGCGGATGGCTTTGAGACCCACCTGGGAGTCAACCAC
---------+---------+---------+---------+---------+---------+ 477
ADR01_0007_F02.b : ATGTTGTGTCCATATTCCAAGACAGCGGATGGCTTTGAGACCCACCTGGGAGTCAACCAC
ADR01_0092_A11.b : ATGTTGTGTCCATATTCCAAGACAGCGGATGGCTTTGAGACCCACCTGGGAGTCAACCAC
20060611C-000324 : CTGGGCCACTTCCTTCTCACGCACTTGCTCTTGGAGCAGCTGAAGGCATCTGCTCCCGCA
---------+---------+---------+---------+---------+---------+ 537
ADR01_0007_F02.b : CTGGGCCACTTCCTTCTCACGCACTTGCTCTTGGAGCAGCTGAAGGCATCTGCTCCCGCA
ADR01_0092_A11.b : CTGGGCCACTTCCTTCTCACGCACTTGCTCTTGGAGCAGCTGAAGGCATCTGCTCCCGCA
20060611C-000324 : CGGGTGGTGAACCTGTCATCCGTGGTCCACCATGCTGGCAAGATTCGCTTCCACGACCTC
---------+---------+---------+---------+---------+---------+ 597
ADR01_0007_F02.b : CGGGTGGTGAACCTGTCATCCGTGGTCCACCATGCTGGCAAGATTCGCTTCCACGACCTC
ADR01_0092_A11.b : CGGGTGGTGAACCTGTCATCCGTGGTCCACCATGCTGGCAAGATTCGCTTCCACGACCTC
20060611C-000324 : CAGGGTGAGAAGCACTACAACCGGGGTTTTGCTTATTGCCACAGCAAGCTGGCCAACGTG
---------+---------+---------+---------+---------+---------+ 657
ADR01_0007_F02.b : CAGGGTGAGAAGCACTACAACCGGGGTTTTGCTTATTGCCACAGCAAGCTGGCCAACGTG
ADR01_0092_A11.b : CAGGGTGAGAAGCACTACAACCGGGGTTTTGCTTATTGCCACAGCAAGCTGGCCAACGTG
20060611C-000324 : CTCTTTACTCGGGAACTGGCCAAGAGGCTCCAAGGCACGGGGGTCACCACGTACGCAGTG
---------+---------+---------+---------+---------+---------+ 717
ADR01_0007_F02.b : CTCTTTACTCGGGAACTGGGCAAGAGGCTCCAAGGCACGGGGGTCACCACGTACGCAGTG
ADR01_0092_A11.b : CTCTTTACTCGGGAACTGGCCAAGAGGCTCCAAGGCACGGGGGTCACCACGTACGCAGTG
20060611C-000324 : CACCCAGGCATCGTCCAGTCTGAGCTGGTCCGGCATTCCTTCCTGCTGTGCCTGCTCTGG
---------+---------+---------+---------+---------+---------+ 777
ADR01_0007_F02.b : CACCCAGGCATCGTCCAGTCTGAGCTGGTCNGGCATTCCTTCCTGCTGTGCCTGCTCTGG
ADR01_0092_A11.b : CACCCAGGCATCGTCCAGTCTGAGCTGGTCCGGCATTCCTTCCTGCTGTGCCTGCTCTGG
20060611C-000324 : CGGCTCTTCTCCCGCTTCCTCAAAACAGCGCGGGAGGGGGCCCAAACACAGCTGCACTGC
---------+---------+---------+---------+---------+---------+ 837
ADR01_0007_F02.b : CGGCTCTTCTCCCGCTTTCTCAAA*CAGCGCGGGAGGGGGCCCAAACA*AGCTGCACTGC
ADR01_0092_A11.b : CGGCTCTTCTCCCGCTTCCTCAAAACAGCGCGGGAGGGGGCCCCCAGACAGCTGCACTGC
20060611C-000324 : GCCCTGGCCGAGGGCCTGGAGCCCCTGAGCGGGCAGTACTTCAGTGACTGCAAAAGGGCC
---------+---------+---------+---------+---------+---------+ 897
ADR01_0007_F02.b : GCCCTGGCCGAGGGCCTG*AGCCCCTGACCGG*CAGTACCTCCNTGACTGCAAAAGGGCC
ADR01_0092_A11.b : GCCCTGGCCGAGGGCCTGGAGCCCCTGAGCGGGCAGTACTTCAGTGACTGNCAGAGGGGC
20060611C-000324 : TGGGTGTC*CCAAGGGCCCCGAAATACAAACGGCCGAGCGCTTGTGAACGTCAGCTGCGA
---------+---------+---------+---------+---------+---------+ 956
ADR01_0007_F02.b : TGGGTGTC*CCAAGGGCCCCGAATAACAAAcggcccaacgctgggggacgtcaactgcaa
ADR01_0092_A11.b : TGGGTGTCGCCAAGGGCCNNGGAATACAAACGGCCGAGCGCTTGTGAACGTCAGCTGCGA
20060611C-000324 : GCTCCTGGGAATCCAGTGGGAGTAGAGCTGCTGGAANATGCCCGGCTGTATTCAGCCTGG
---------+---------+---------+---------+---------+---------+ 1016
ADR01_0007_F02.b : ctcctgggatccagtggaattaaactgctgaaaatgccgggctgtttaagccggttccag
ADR01_0092_A11.b : GCTCCTGGGAATCCAGTGGGAGTAGAGCTGCTGGAANATGCCCGGCTGTATTCAGCCTGG
20060611C-000324 : TCCAGGCCATAACGCAAACGGGGAGATGCCCACCCCAAGGACTGACTGGNTGGGTGCTGT
---------+---------+---------+---------+---------+---------+ 1076
ADR01_0007_F02.b : ccaaaaccaaaccgggaaaggcccaccccaaggatgactggctgcggcttccaaaaactc
ADR01_0092_A11.b : TCCAGGCCATAACGCAAACGGGGAGATGCCCACCCCAAGGACTGACTGGNTGGGTGCTGT
20060611C-000324 : CCCAAAACTTCCC...............................................
---------+---------+---------+---------+---------+---------+ 1089
ADR01_0007_F02.b : ccgcttgattcccggatctggaaactccccaaccaacctttacaggtgatttcgcataaa
ADR01_0092_A11.b : CCCAAAACTTCCCggttggaattccggaacctgggaaacccccccaaccctacccttttc
20060611C-000324 : ............................................................
---------+---------+---------+---------+---------+---------+ 1089
ADR01_0007_F02.b : gtcaaccggaaacctccttaaaattcaaacggcccttcgggaggagagggaaaaccgttg
ADR01_0092_A11.b : cgggtgattcgcgtaaaaggttttaccgggaagaacccccttaaaatttgaaagcgcact
20060611C-000324 : ............................................................
---------+---------+---------+---------+---------+---------+ 1089
ADR01_0007_F02.b : tcacggaggaaaaccggaattattttttcccaaaaaaacccccccctggggggggtaatt
ADR01_0092_A11.b : ttttg
20060611C-000324 : ............................................................
---------+---------+---------+---------+---------+---------+ 1089
ADR01_0007_F02.b : tggggaaccaccgcgatttccttaaaaacgccgggtgggaaaacccaatattggggaaaa
ADR01_0092_A11.b :
20060611C-000324 : ............................................................
---------+---------+---------+---------+---------+---------+ 1089
ADR01_0007_F02.b : tacacacccc
ADR01_0092_A11.b :