[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20060611C-000324
Length:
1,089
Sequence:
[FASTA format sequence]
GCCAGGCTGT TGCTGAGCAC CCAGGATCGA GAAGAGGCAG AGGAAAGGGA AGCAGAGAGA
AGCAGCCAAG AGTTGGAGCC AGACCAGGAG GAGCCCGAGT GGAGTTGAAG TTCCTTTTGC
AGAGGCGGCA GCAAGTAAAG CAGTTGAAAC GATGCTGGCT GTCTTGGGAC TGCTCACCTC
CTTCCTTTTT TTTCCTGTAT GTGACAGCTC CATCCATCAG GAGCCCGAGT ATACATTGCC
TGCCGAGATG TACTGAAGGG GGAGTCTGCT GCCAGTGAAA TCCGAGCTGA TACAAAGAAC
TCCCAGGTGC TGGTGCGGAA ACTGGACCTC TCTGATACCA AATCCATCCG AGCCTCTGCT
GAGGGCTTTC TGACAGAGGA AAAGCAGCTC CATATTCTGA TCAACAATGC TGGAGTGATG
TTGTGTCCAT ATTCCAAGAC AGCGGATGGC TTTGAGACCC ACCTGGGAGT CAACCACCTG
GGCCACTTCC TTCTCACGCA CTTGCTCTTG GAGCAGCTGA AGGCATCTGC TCCCGCACGG
GTGGTGAACC TGTCATCCGT GGTCCACCAT GCTGGCAAGA TTCGCTTCCA CGACCTCCAG
GGTGAGAAGC ACTACAACCG GGGTTTTGCT TATTGCCACA GCAAGCTGGC CAACGTGCTC
TTTACTCGGG AACTGGCCAA GAGGCTCCAA GGCACGGGGG TCACCACGTA CGCAGTGCAC
CCAGGCATCG TCCAGTCTGA GCTGGTCCGG CATTCCTTCC TGCTGTGCCT GCTCTGGCGG
CTCTTCTCCC GCTTCCTCAA AACAGCGCGG GAGGGGGCCC AAACACAGCT GCACTGCGCC
CTGGCCGAGG GCCTGGAGCC CCTGAGCGGG CAGTACTTCA GTGACTGCAA AAGGGCCTGG
GTGTCCCAAG GGCCCCGAAA TACAAACGGC CGAGCGCTTG TGAACGTCAG CTGCGAGCTC
CTGGGAATCC AGTGGGAGTA GAGCTGCTGG AANATGCCCG GCTGTATTCA GCCTGGTCCA
GGCCATAACG CAAACGGGGA GATGCCCACC CCAAGGACTG ACTGGNTGGG TGCTGTCCCA
AAACTTCCC
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
RDH12 | retinol dehydrogenase 12 (all-trans/9-cis/11-cis) | 411 | e-115 | O | ||
RDH11 | retinol dehydrogenase 11 (all-trans/9-cis/11-cis) | 336 | 2e-92 | O | ||
RDH14 | retinol dehydrogenase 14 (all-trans/9-cis/11-cis) | 196 | 4e-50 | O | ||
RDH13 | retinol dehydrogenase 13 (all-trans/9-cis) | 176 | 3e-44 | O | ||
MGC23280 | hypothetical protein MGC23280 | 166 | 2e-41 | O | ||
WWOX | WW domain containing oxidoreductase | 133 | 3e-31 | |||
DHRSX | dehydrogenase/reductase (SDR family) X-linked | 132 | 7e-31 | O | ||
FLJ13639 | hypothetical protein FLJ13639 | 63.5 | 3e-10 | O | ||
FLJ13639 | hypothetical protein FLJ13639 | 56.6 | 4e-08 | O | ||
LOC388963 | similar to short-chain dehydrogenase/reductase 1 | 56.2 | 5e-08 |
Locus | Definition | Score | E value | FL |
---|
Locus | Definition | Score | E value | FL |
---|
Locus | Definition | Score | E value | FL |
---|
Locus | Definition | Score | E value | FL |
---|
|
20060611C-000324 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
ADR01_0007_F02.b : nnnttgatgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0092_A11.b : nnccccttannnnnggagtaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20060611C-000324 : ...GCCAGGCTGTTGCTGAGCACCCAGGATCGAGAAGAGGCAGAGGAAAGGGAAGCAGAG
---------+---------+---------+---------+---------+---------+ 57
ADR01_0007_F02.b : xxxGCCAGGCTGTTGCTGAGCACCCAGGATCGAGAAGAGGCAGAGGAAAGGGAAGCAGAG
ADR01_0092_A11.b : xxxxxxxGGCTGTTGCTGAGCACCCAGGATCGAGAAGAGGCAGAGGAAAGGGGAGCAGAG
20060611C-000324 : AGAAGCAGCCAAGAGTTGGAGCCAGACCAGGAGGAGCCCGAGTGGAGTTGAAGTTCCTTT
---------+---------+---------+---------+---------+---------+ 117
ADR01_0007_F02.b : AGAAGCAGCCAAGAGTTGGAGCCAGACCAGGAGGAGCCCGAGTGGAGTTGAAGTTCCTTT
ADR01_0092_A11.b : AGAAGCAGCCAAGAGTTGGAGCCAGACCAGGAGGAGCCCGAGTGGAGTTGAAGTTCCTTT
20060611C-000324 : TGCAGAGGCGGCAGCAAGTAAAGCAGTTGAAACGATGCTGGCTGTCTTGGGACTGCTCAC
---------+---------+---------+---------+---------+---------+ 177
ADR01_0007_F02.b : TGCAGAGGCGGCAGCAAGTAAAGCAGTTGAAACGATGCTGGCTGTCTTGGGACTGCTCAC
ADR01_0092_A11.b : TGCAGAGGCGGCAGCAAGTAAAGCAGTTGAAACGATGCTGGCTGTCTTGGGACTGCTCAC
20060611C-000324 : CTCCTTCCTTTTTTTTCCTGTATGTGACAGCTCCATCCATCAGGAGCCCGAGTATACATT
---------+---------+---------+---------+---------+---------+ 237
ADR01_0007_F02.b : CTCCTTCCTTTTTTT*CCTGTATGTGACAGCTCCATCCATCAGGAGCCCGAGTATACATT
ADR01_0092_A11.b : CTCCTTCCTTTTTTTTCCTGTATGTGACAGCTCCATCCATCAGGAGCCCGAGTATACATT
20060611C-000324 : GCCTGCCGAGATGTACTGAAGGGGGAGTCTGCTGCCAGTGAAATCCGAGCTGATACAAAG
---------+---------+---------+---------+---------+---------+ 297
ADR01_0007_F02.b : GCCTGCCGAGATGTACTGAAGGGGGAGTCTGCTGCCAGTGAAATCCGAGCTGATACAAAG
ADR01_0092_A11.b : GCCTGCCGAGATGTACTGAAGGGGGAGTCTGCTGCCAGTGAAATCCGAGCTGATACAAAG
20060611C-000324 : AACTCCCAGGTGCTGGTGCGGAAACTGGACCTCTCTGATACCAAATCCATCCGAGCCTCT
---------+---------+---------+---------+---------+---------+ 357
ADR01_0007_F02.b : AACTCCCAGGTGCTGGTGCGGAAACTGGACCTCTCTGATACCAAATCCATCCGAGCCTTT
ADR01_0092_A11.b : AACTCCCAGGTGCTGGTGCGGAAACTGGACCTCTCTGATACCAAATCCATTCGAGCCTCT
20060611C-000324 : GCTGAGGGCTTTCTGACAGAGGAAAAGCAGCTCCATATTCTGATCAACAATGCTGGAGTG
---------+---------+---------+---------+---------+---------+ 417
ADR01_0007_F02.b : GCTGAGGGCTTTCTGACAGAGGAAAAGCAGCTCCATATTCTGATCAACAATGCTGGAGTG
ADR01_0092_A11.b : GCTGAGGGCTTTCTGACAGAGGAAAAGCAGCTCCATATTCTGATCAACAATGCTGGAGTG
20060611C-000324 : ATGTTGTGTCCATATTCCAAGACAGCGGATGGCTTTGAGACCCACCTGGGAGTCAACCAC
---------+---------+---------+---------+---------+---------+ 477
ADR01_0007_F02.b : ATGTTGTGTCCATATTCCAAGACAGCGGATGGCTTTGAGACCCACCTGGGAGTCAACCAC
ADR01_0092_A11.b : ATGTTGTGTCCATATTCCAAGACAGCGGATGGCTTTGAGACCCACCTGGGAGTCAACCAC
20060611C-000324 : CTGGGCCACTTCCTTCTCACGCACTTGCTCTTGGAGCAGCTGAAGGCATCTGCTCCCGCA
---------+---------+---------+---------+---------+---------+ 537
ADR01_0007_F02.b : CTGGGCCACTTCCTTCTCACGCACTTGCTCTTGGAGCAGCTGAAGGCATCTGCTCCCGCA
ADR01_0092_A11.b : CTGGGCCACTTCCTTCTCACGCACTTGCTCTTGGAGCAGCTGAAGGCATCTGCTCCCGCA
20060611C-000324 : CGGGTGGTGAACCTGTCATCCGTGGTCCACCATGCTGGCAAGATTCGCTTCCACGACCTC
---------+---------+---------+---------+---------+---------+ 597
ADR01_0007_F02.b : CGGGTGGTGAACCTGTCATCCGTGGTCCACCATGCTGGCAAGATTCGCTTCCACGACCTC
ADR01_0092_A11.b : CGGGTGGTGAACCTGTCATCCGTGGTCCACCATGCTGGCAAGATTCGCTTCCACGACCTC
20060611C-000324 : CAGGGTGAGAAGCACTACAACCGGGGTTTTGCTTATTGCCACAGCAAGCTGGCCAACGTG
---------+---------+---------+---------+---------+---------+ 657
ADR01_0007_F02.b : CAGGGTGAGAAGCACTACAACCGGGGTTTTGCTTATTGCCACAGCAAGCTGGCCAACGTG
ADR01_0092_A11.b : CAGGGTGAGAAGCACTACAACCGGGGTTTTGCTTATTGCCACAGCAAGCTGGCCAACGTG
20060611C-000324 : CTCTTTACTCGGGAACTGGCCAAGAGGCTCCAAGGCACGGGGGTCACCACGTACGCAGTG
---------+---------+---------+---------+---------+---------+ 717
ADR01_0007_F02.b : CTCTTTACTCGGGAACTGGGCAAGAGGCTCCAAGGCACGGGGGTCACCACGTACGCAGTG
ADR01_0092_A11.b : CTCTTTACTCGGGAACTGGCCAAGAGGCTCCAAGGCACGGGGGTCACCACGTACGCAGTG
20060611C-000324 : CACCCAGGCATCGTCCAGTCTGAGCTGGTCCGGCATTCCTTCCTGCTGTGCCTGCTCTGG
---------+---------+---------+---------+---------+---------+ 777
ADR01_0007_F02.b : CACCCAGGCATCGTCCAGTCTGAGCTGGTCNGGCATTCCTTCCTGCTGTGCCTGCTCTGG
ADR01_0092_A11.b : CACCCAGGCATCGTCCAGTCTGAGCTGGTCCGGCATTCCTTCCTGCTGTGCCTGCTCTGG
20060611C-000324 : CGGCTCTTCTCCCGCTTCCTCAAAACAGCGCGGGAGGGGGCCCAAACACAGCTGCACTGC
---------+---------+---------+---------+---------+---------+ 837
ADR01_0007_F02.b : CGGCTCTTCTCCCGCTTTCTCAAA*CAGCGCGGGAGGGGGCCCAAACA*AGCTGCACTGC
ADR01_0092_A11.b : CGGCTCTTCTCCCGCTTCCTCAAAACAGCGCGGGAGGGGGCCCCCAGACAGCTGCACTGC
20060611C-000324 : GCCCTGGCCGAGGGCCTGGAGCCCCTGAGCGGGCAGTACTTCAGTGACTGCAAAAGGGCC
---------+---------+---------+---------+---------+---------+ 897
ADR01_0007_F02.b : GCCCTGGCCGAGGGCCTG*AGCCCCTGACCGG*CAGTACCTCCNTGACTGCAAAAGGGCC
ADR01_0092_A11.b : GCCCTGGCCGAGGGCCTGGAGCCCCTGAGCGGGCAGTACTTCAGTGACTGNCAGAGGGGC
20060611C-000324 : TGGGTGTC*CCAAGGGCCCCGAAATACAAACGGCCGAGCGCTTGTGAACGTCAGCTGCGA
---------+---------+---------+---------+---------+---------+ 956
ADR01_0007_F02.b : TGGGTGTC*CCAAGGGCCCCGAATAACAAAcggcccaacgctgggggacgtcaactgcaa
ADR01_0092_A11.b : TGGGTGTCGCCAAGGGCCNNGGAATACAAACGGCCGAGCGCTTGTGAACGTCAGCTGCGA
20060611C-000324 : GCTCCTGGGAATCCAGTGGGAGTAGAGCTGCTGGAANATGCCCGGCTGTATTCAGCCTGG
---------+---------+---------+---------+---------+---------+ 1016
ADR01_0007_F02.b : ctcctgggatccagtggaattaaactgctgaaaatgccgggctgtttaagccggttccag
ADR01_0092_A11.b : GCTCCTGGGAATCCAGTGGGAGTAGAGCTGCTGGAANATGCCCGGCTGTATTCAGCCTGG
20060611C-000324 : TCCAGGCCATAACGCAAACGGGGAGATGCCCACCCCAAGGACTGACTGGNTGGGTGCTGT
---------+---------+---------+---------+---------+---------+ 1076
ADR01_0007_F02.b : ccaaaaccaaaccgggaaaggcccaccccaaggatgactggctgcggcttccaaaaactc
ADR01_0092_A11.b : TCCAGGCCATAACGCAAACGGGGAGATGCCCACCCCAAGGACTGACTGGNTGGGTGCTGT
20060611C-000324 : CCCAAAACTTCCC...............................................
---------+---------+---------+---------+---------+---------+ 1089
ADR01_0007_F02.b : ccgcttgattcccggatctggaaactccccaaccaacctttacaggtgatttcgcataaa
ADR01_0092_A11.b : CCCAAAACTTCCCggttggaattccggaacctgggaaacccccccaaccctacccttttc
20060611C-000324 : ............................................................
---------+---------+---------+---------+---------+---------+ 1089
ADR01_0007_F02.b : gtcaaccggaaacctccttaaaattcaaacggcccttcgggaggagagggaaaaccgttg
ADR01_0092_A11.b : cgggtgattcgcgtaaaaggttttaccgggaagaacccccttaaaatttgaaagcgcact
20060611C-000324 : ............................................................
---------+---------+---------+---------+---------+---------+ 1089
ADR01_0007_F02.b : tcacggaggaaaaccggaattattttttcccaaaaaaacccccccctggggggggtaatt
ADR01_0092_A11.b : ttttg
20060611C-000324 : ............................................................
---------+---------+---------+---------+---------+---------+ 1089
ADR01_0007_F02.b : tggggaaccaccgcgatttccttaaaaacgccgggtgggaaaacccaatattggggaaaa
ADR01_0092_A11.b :
20060611C-000324 : ............................................................
---------+---------+---------+---------+---------+---------+ 1089
ADR01_0007_F02.b : tacacacccc
ADR01_0092_A11.b :