[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20060611C-001115
Length:
1,184
Sequence:
[FASTA format sequence]
ATCTTTGTTG GGGGCAGCAG GGCCGGGCGT CTGGAGATGC CGAAGTCGTG CGCTGCCCGG
CAGTGTTGCA ACCGCTACAG CAGTCGCAGG AAGCAGCTCA CCTTCCACCG GTTCCCGTTC
AGCCGCCCAG AGCTGCTAAA GGAATGGGTG CTGAACATCG GCCGAGGCGA CTTCGAGCCC
AAGCAGCACA CGGTCATCTG CTCGGAGCAC TTCCGCCCCG AGTGCTTCAG CGCCTTTGGG
AACCGCAAGA ACCTGAAGCA CAACGCGGTG CCCACGGAGT TCACCTTCCA GGGGCCCCCG
CAGCTGGTGC GGGAGACGGC TGACCCTGAT GGCCAGATCG GGGCCGCCTC TGAGAAGGGA
GAGGTCCACC CTGAGACGGG GCCCAGCGAG TGTGGCCCGG GGAGGAAGAG GGACACGGCA
CTCGAGGTGC GGCAGCCGCC CCCGGACGCC GGGGGCCCCC GAGCACAGGG CCAGCCTGGC
AGAACAGGAG CCGTGGCCAA GGCCCCGGGG CAGCCGGCCA GCCCCCCGGG GTCCGGAAGA
CCGCCGTCCA CGCAGCCACC GGACCACAGC TATGCCCTTC TGGACTTGGA CGCCTTAAAA
AAGAAACTCT TCCTGACTCT GCGGGAGAAC GAGAGGCTCC GCAGGCGCTT GCGGGCCCAG
AGGCTGGTGA TGCGGAGGAT GGCCAGCCAC CTCCAAGCCT GCCGGGCCGG GTCGCGGCCA
GAGCAGCAGA GCTGAGCCTG ACATCCGGGC TTCCTCCCCG GAGCCCCTGG CCCTGGCGTC
GCCAAGAGCC CAGCGCTGCG GCCGCAGGTG AAGGTCAGCG GCATCGGGCA TGGAGGGGGC
AGGGCCGGGA GCAGACCCCC AGGGTCCCCG CTGTCCCCCC ACACAAGCTG GGCCAGCGTC
TGGGGAACAC CCCAAGCCAC ACGGGCAGGT GCTCCCAAAA GGGGTAGCGG GCGTGGGGTG
GGGCCGGGGG GGGCGCCGGG CCGACTCTGG GGGAAGTTGA GCCGGTCCCC TTTGGCCCCC
TGGAACAGCC CGCTGGCGGT TCTGGGGGCC CAAAACTTGG CTTTTTGGTT CTTAAGGAGC
CAACCCCCCG GCTTGGGCCC AGGGGTCCGG GCCCCACCGG GCGGTAAAAT AAAAAGCAAT
TTTTTTCCCT AAGGGGGAAA AAAAAAAAAA AAAAAAAAAA AAAA
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | THAP3 | THAP domain containing, apoptosis associated protein 3 | 221 | 7e-58 | O |
|
| THAP1 | THAP domain containing, apoptosis associated protein 1 | 90.9 | 2e-18 | O |
|
| THAP2 | THAP domain containing, apoptosis associated protein 2 | 76.6 | 4e-14 | O |
|
| THAP8 | THAP domain containing 8 | 61.6 | 1e-09 | O |
|
| THAP4 | THAP domain containing 4 | 54.7 | 2e-07 | O |
|
| THAP7 | THAP domain containing 7 | 53.9 | 3e-07 | O |
|
| THAP7 | THAP domain containing 7 | 53.9 | 3e-07 | O |
|
| THAP9 | THAP domain containing 9 | 52.4 | 7e-07 | O |
|
| THAP6 | THAP domain containing 6 | 50.1 | 4e-06 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20060611C-001115 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
MLN01_0069_F02.b : ngggggctaggactatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPL01_0044_G05.b : nnnccgctaggactatnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0052_C10.b : nnngatgxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0004_D10.b : ggtgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20060611C-001115 : ....................ATCTTTGTTGGGGGCAGCAGGGCCGGGCGTCTGGAGATGC
---------+---------+---------+---------+---------+---------+ 40
MLN01_0069_F02.b : xxxxxxxxxxxxxxxxxxxxATCTTTGTTGGGGGCAGCAGGGCCGGGCGTCTGGAGATGC
SPL01_0044_G05.b : xxxxxxxxxxxxxxxxxxxxxTCTTTGTTGGGGGCAGCAGGGCCGGGCGTCTGGAGATGC
ITT01_0052_C10.b : xxxxxxxxxxxxxxxxxxxxxTCTTTGTTGGGGGCAGCAGGGCCGGGCGTCTGGAGATGC
OVR01_0004_D10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGGAGATGC
20060611C-001115 : CGAAGTCGTGCGCTGCCCGGCAGTGTTGCAACCGCTACAGCAGTCGCAGGAAGCAGCTCA
---------+---------+---------+---------+---------+---------+ 100
MLN01_0069_F02.b : CGAAGTCGTGCGCTGCCCGGCAGTGTTGCAACCGCTACAGCAGTCGCAGGAAGCAGCTCA
SPL01_0044_G05.b : CGAAGTCGTGCGCTGCCCGGCAGTGTTGCAACCGCTACAGCAGTCGCAGGAAGCAGCTCA
ITT01_0052_C10.b : CGAAGTCGTGCGCTGCCCGGCAGTGTTGCAACCGCTACAGCAGTCGCAGGAAGCAGCTCA
OVR01_0004_D10.b : CGAAGTCGTGCGCTGCCCGGCAGTGTTGCAACCGCTACAGCAGTCGCAGGAAGCAGCTCA
20060611C-001115 : CCTTCCACCGGTTCCCGTTCAGCCGCCCAGAGCTGCTAAAGGAATGGGTGCTGAACATCG
---------+---------+---------+---------+---------+---------+ 160
MLN01_0069_F02.b : CCTTCCACCGGTTCCCGTTCAGCCGCCCAGAGCTGCTAAAGGAATGGGTGCTGAACATCG
SPL01_0044_G05.b : CCTTCCACCGGTTCCCGTTCAGCCGCCCAGAGCTGCTAAAGGAATGGGTGCTGAACATCG
ITT01_0052_C10.b : CCTTCCACCGGTTCCCGTTCAGCCGCCCAGAGCTGCTAAAGGAATGGGTGCTGAACATCG
OVR01_0004_D10.b : CCTTCCACCGGTTCCCGTTCAGCCGCCCAGAGCTGCTAAAGGAATGGGTGCTGAACATCG
20060611C-001115 : GCCGAGGCGACTTCGAGCCCAAGCAGCACACGGTCATCTGCTCGGAGCACTTCCGCCCCG
---------+---------+---------+---------+---------+---------+ 220
MLN01_0069_F02.b : GCCGAGGCGACTTCGAGCCCAAGCAGCACACGGTCATCTGCTCGGAGCACTTCCGCCCCG
SPL01_0044_G05.b : GCCGAGGCGACTTCGAGCCCAAGCAGCACACGGTCATCTGCTCGGAGCACTTCCGCCCCG
ITT01_0052_C10.b : GCCGAGGCGACTTCGAGCCCAAGCAGCACACGGTCATCTGCTCGGAGCACTTCCGCCCCG
OVR01_0004_D10.b : GCCGAGGCGACTTCGAGCCCAAGCAGCACACGGTCATCTGCTCGGAGCACTTCCGCCCCG
20060611C-001115 : AGTGCTTCAGCGCCTTTGGGAACCGCAAGAACCTGAAGCACAACGCGGTGCCCACGGAGT
---------+---------+---------+---------+---------+---------+ 280
MLN01_0069_F02.b : AGTGCTTCAGCGCCTTTGGGAACCGCAAGAACCTGAAGCACAACGCGGTGCCCACGGAGT
SPL01_0044_G05.b : AGTGCTTCAGCGCCTTTGGGAACCGCAAGAACCTGAAGCACAACGCGGTGCCCACGGAGT
ITT01_0052_C10.b : AGTGCTTCAGCGCCTTTGGGAACCGCAAGAACCTGAAGCACAACGCGGTACCCACGGAGT
OVR01_0004_D10.b : AGTGCTTCAGCGCCTTTGGGAACCGCAAGAACCTGAAGCACAACGCGGTGCCCACGGAGT
20060611C-001115 : TCACCTTCCAGGGGCCCCCGCAGCTGGTGCGGGAGACGGCTGACCCTGATGGCCAGATCG
---------+---------+---------+---------+---------+---------+ 340
MLN01_0069_F02.b : TCACCTTCCAGGGGCCCCCGCAGCTGGTGCGGGAGACGGCTGACCCTGATGGCCAGATCG
SPL01_0044_G05.b : TCACCTTCCAGGGGCCCCCGCAGCTGGTGCGGGAGACGGCTGACCCTGATGGCCAGATCG
ITT01_0052_C10.b : TCACCTTCCAGGGGCCCCCGCAGCTGGTGCGGGAGACGGCTGACCCTGATGGCCAGATCG
OVR01_0004_D10.b : TCACCTTCCAGGGGCCCCCGCAGCTGGTGCGGGAGACGGCTGACCCTGATGGCCAGATCG
20060611C-001115 : GGGCCGCCTCTGAGAAGGGAGAGGTCCACCCTGAGACGGGGCCCAGCGAGTGTGGCCCGG
---------+---------+---------+---------+---------+---------+ 400
MLN01_0069_F02.b : GGGCCGCCTCTGAGAAGGGAGAGGTCCACCCTGAGACGGGGCCCAGCGAGTGTGGCCCGG
SPL01_0044_G05.b : GGGCCGCCTCTGAGAAGGGAGAGGTCCACCCTGAGACGGGGCCCAGCGAGTGTGGCCCGG
ITT01_0052_C10.b : GGGCCGCCTCTGAGAAGGGAGAGGTCCACCCTGAGACGGGGCCCAGCGAGTGTGGCCCGG
OVR01_0004_D10.b : GGGCCGCCTCTGAGAAGGGAGAGGTCCACCCTGAGACGGGGCCCAGCGAGTGTGGCCCGG
20060611C-001115 : GGAGGAAGAGGGACACGGCACTCGAGGTGCGGCAGCCGCCCCCGGACGCCGGGGGCCCCC
---------+---------+---------+---------+---------+---------+ 460
MLN01_0069_F02.b : GGAGGAAGAGGGACACGGCACTCGAGGTGCGGCAGCCGCCCCCGGACGCCGGGGGCCCCC
SPL01_0044_G05.b : GGAGGAAGAGGGACACGGCACTCGAGGTGCGGCAGCCGCCCCCGGACGCCGGGGGCCCCC
ITT01_0052_C10.b : GGAGGAAGAGGGACACGGCACTCGAGGTGCGGCAGCCGCCCCCGGACGCCGGGGGCCCCC
OVR01_0004_D10.b : GGAGGAAGAGGGACACGGCACTCGAGGTGCGGCAGCCGCCCCCGGACGCCGGGGGCCCCC
20060611C-001115 : GAGCACAGGGCCAGCCTGGCAGAACAGGAGCCGTGGCCAAGGCCCCGGGGCAGCCGGCCA
---------+---------+---------+---------+---------+---------+ 520
MLN01_0069_F02.b : GAGCACAGGGCCAGCCTGGCAGAACAGGAGCCGTGGCCAAGGCCCCGGGGCAGCCGGCCA
SPL01_0044_G05.b : GAGCACAGGGCCAGCCTGGCAGAACAGGAGCCGTGGCCAAggccccggggcagccggcca
ITT01_0052_C10.b : GAGCACAGGGCCAGCCTGGCAGAACAGGAGCCGTGGCCAAggccccggggcagccggcca
OVR01_0004_D10.b : GAGCACAGGGCCAGCCTGGCAGAACAGGAGCCGTGGCCAAGGCCCCGGGGCAGCCGGCCA
20060611C-001115 : GCCCCCCGGGGTCCGGAAGACCGCCGTCCACGCAGCCACCGGACCACAGCTATGCCCTTC
---------+---------+---------+---------+---------+---------+ 580
MLN01_0069_F02.b : GCCCCCCGGGGTCCGGAAGACCGCCGTCCACGCAGCCACCGGACCACAGCTATGCCCTTC
SPL01_0044_G05.b : gccccccgggggccggAAGACCGCCGTCCACGCAGCCACCGGACCACAGCTATGCCCTTC
ITT01_0052_C10.b : gccccccgggggccggAAGACCGCCGTCCACGCAGCCACCGGACCACAGCTATGCCCTTC
OVR01_0004_D10.b : GCCCCCCGGGGTCCGGAAGACCGCCGTCCACGCAGCCACCGGACCACAGCTATGCCCTTC
20060611C-001115 : TGGACTTGGACGCCTTAAAAAAGAAACTCTTCCTGACTCTGCGGGAGAACGAGAGGCTCC
---------+---------+---------+---------+---------+---------+ 640
MLN01_0069_F02.b : TGGACTTGGACGCCTTAAAAAAGAAACTCTTCCTGACTCTGCGGGAGAACGAGAGGCTCC
SPL01_0044_G05.b : TGGACTTGGACGCCTTAAAAAAGAAACTCTTCCTGACTCTGCGGGAGAACGAGAGGCTCC
ITT01_0052_C10.b : TGGACTTGGACGCCTTAAAAAAGAAACTCTTCTTGACTCTGCGGGAGAACGAGAGGCTCC
OVR01_0004_D10.b : TGGACTTGGACGCCTTAAAAAAGAAACTCTTCCTGACTCTGCGGGAGAACGAGAGGCTCC
20060611C-001115 : GCAGGCGCTTGCGGGCCCAGAGGCTGGTGATGCGGAGGATGGCCAGCCACCTCCAAGCCT
---------+---------+---------+---------+---------+---------+ 700
MLN01_0069_F02.b : GCAGGCGCTTGCGGGCCCAGAGGCTGGTGATGCGGAGGATGGCCAGCCACCTCCAAGCCT
SPL01_0044_G05.b : GCAGGCGCTTGCGGGCCCAGAGGCTGGTGATGCGGAGGATGGCCAGCCACCTCCAAGCCT
ITT01_0052_C10.b : GCAGGCGCTTGCGGGCCCAGAGGCTGGTGATGCGGAGGATGGCCAGCCACCTCCAAGCCT
OVR01_0004_D10.b : GCAGGCGCTTGCGGGCCCAGAGGCTGGTGATGCGGAGGATGGCCAGCCACCTCCAAGCCT
20060611C-001115 : GCCGGGCCGGGTCGCGGCCAGAGCAGCAGAGCTGAGCCTGACATCCGGGCTTCCTCCCCG
---------+---------+---------+---------+---------+---------+ 760
MLN01_0069_F02.b : GCCGGGCCGGGTCGCGGCCAGAGCAGCAGAGCTGAGCCTGACATCCGGGCTTCCTCCCCG
SPL01_0044_G05.b : GCCGGGCCGGGTCGCGGCCAGAGCAGCAGAGCTGAGCCTGACATCCGGGGCTCCTCCCCG
ITT01_0052_C10.b : GCCGGGCCGGGTCGCGGCCAGAGCAGCAGAGCTGAGCCTGACATCCGGGCTTCCTCCCCG
OVR01_0004_D10.b : GCCGGGCCGGGTCGCGGCCAGAGCAGCAGAGCTGAGCCTGACATCCGGGCTTCCTCCCCG
20060611C-001115 : GAGCCCCTGGCCCTGGCGTCGCCAAGAGCCCAGCGCTGCGGCC*GCAGGTGAAGGTCAGC
---------+---------+---------+---------+---------+---------+ 819
MLN01_0069_F02.b : GAGCCCCTGGCCCTGGCGTCGCCAAGAGCCCAGCGCTGCGGCC*GCAGGTGAAGGTCAGC
SPL01_0044_G05.b : GAGCCCCTGGCCCTGGCGTCGCCCAGAGCCCAGCGCTGCGGCCCGCAGTGAAAGGCCACC
ITT01_0052_C10.b : GAGCCCCTGGCCCTGGCGTCGCCAAGAGCCCAGCGCTGCGGCC*GCAGGTGAAGGTCAGC
OVR01_0004_D10.b : GAGCCCCTGGCCCTGGCGTCGCCAAGAGCCCAGCGCTGCGGCC*GCAGGTGAAGGTCAGC
20060611C-001115 : GGCATCGGGCAT*GGAGGGGGCAG*GGCCGGGAGCAGA*CCCCCAGGGTCCCCGCTGTCC
---------+---------+---------+---------+---------+---------+ 876
MLN01_0069_F02.b : GGCATCGGGCAT*GGAGGGGGCAG*GGCCGGGAGCAGA*CCCCCAG*GTCCCCGCTGTCC
SPL01_0044_G05.b : GGCATCGGGCATTGGAGGGGGCAGGGGCCGGGAACAAAACCCCCAGGGTCCCGGCTGTCC
ITT01_0052_C10.b : GGCATCGGGCAT*GGAGGGGGCAG*GGCCGGGAGCAGA*CCCCCAGGGTCCCCGCTGTCC
OVR01_0004_D10.b : GGCATCGGGCAT*GGAGGGGGCAG*GGCCGGGAGCAGA*CCCCCAGGGTCCCCGCTGTCC
20060611C-001115 : CCCCA*CACAAGCTGGGCCAGCGTCTGGGGAACACCCCAAGCCACACGGGCAGGTGCTCC
---------+---------+---------+---------+---------+---------+ 935
MLN01_0069_F02.b : CCCCA*CACAAGCTGGGGCAGCGTCTGGGGAACACCCCNAGC*ACACGGGCAGGTGCtcc
SPL01_0044_G05.b : CCCCcaaaaaaaagttggggcccagcgtcttggggaaaaaccccccagccacaccggggc
ITT01_0052_C10.b : CCCCAACACAAGCTGGGCCAGCGTCTGGGGAACACCCCAAGC*ACACGGGCAGGTGCTCC
OVR01_0004_D10.b : CCCCA*CACAAGCTGGGCCAGCGTCTGGGGAACACCCCAAGCCACACGGGCAGGTGCTCC
20060611C-001115 : CAAAAGGGGTAGCGGGCGTGGGGTGGGGCCGGGGGGGGCGCCGGGCCGACTCTGGGGGAA
---------+---------+---------+---------+---------+---------+ 995
MLN01_0069_F02.b : caaaannggtancgggcgtgggntggccgtgggggccccgccgactctggggcanctgaa
SPL01_0044_G05.b : aggggggctcccaaaaaaggtttaaccgggccttgggggtggtcccgggttggggggccc
ITT01_0052_C10.b : Ccagaggggtanncggcgtggggtggtcggtgggggccccggccgactctggggcaactg
OVR01_0004_D10.b : CAAAAGGGGTAGCGGGCGTGGGGTggggccggggggggcgccgggccgACTCTGGGGGAA
20060611C-001115 : GTTGAGCCGGTCCCCTTTGGCCCCCTGGAACAGCCCGCTGGCGGTTCTGGGGGCCCAAAA
---------+---------+---------+---------+---------+---------+ 1055
MLN01_0069_F02.b : cctcccctctgtgctggaacgccggctggcctctggggcgaccctgcttctgttcaagga
SPL01_0044_G05.b : cccggcccaaaatttggggggaaaactagaaaccccttcccccttttgttcccccttgta
ITT01_0052_C10.b : agccgttccctctgtcggctggacagcccgctggcgctctgggggcgaacctggctttct
OVR01_0004_D10.b : GTTGAGCCGGTCCCCTTTGGCCCCCTGGAACAGCCCGCTGGCGGTTCTGGGGGCCCAAAA
20060611C-001115 : CTTGGCTTTTTGGTTCTTAAGGAGCCAACCCCCCGGCTTGGGCCCAGGGGTCCGGGCCCC
---------+---------+---------+---------+---------+---------+ 1115
MLN01_0069_F02.b : ccaccccggcgggcaggtccggccacgcgtaataacatcttctgggcnnaaaaataaana
SPL01_0044_G05.b : aacaccccctcttgggggtcttccttgggggcgcaaacaaattgtggtttttct
ITT01_0052_C10.b : gtctaggaacaaccccggctggccagggtcgcgccacgccgtaaaaacatcttctaggga
OVR01_0004_D10.b : CTTGGCTTTTTGGTTCTTAAGGAGCCAACCCCCCGGCTTGGGCCCAGGGGTCCGGGCCCC
20060611C-001115 : ACCGGGCGGTAAAATAAAAAGCAATTTTTTTCCCTAAGGGGGAAAAAAAAAAAAAAAAAA
---------+---------+---------+---------+---------+---------+ 1175
MLN01_0069_F02.b : nnaaaananaannnggggccatggtctcactggagcccgccgcctaaattcctcgggggc
SPL01_0044_G05.b :
ITT01_0052_C10.b : aaaaaaaaaaaaaaaaaaaaaaaagggccaatggcccaaactgaggtccggcccccctaa
OVR01_0004_D10.b : ACCGGGCGGTAAAATAAAAAGCAATTTTTTTCCCTAAGGGGGaaaaaaaaaaaaaaaaaa
20060611C-001115 : AAAAAAAAA...................................................
---------+---------+---------+---------+---------+---------+ 1184
MLN01_0069_F02.b : aagttacgtacagttttgttaaaagggcccaaagagcatattaaagggcgggccctttta
SPL01_0044_G05.b :
ITT01_0052_C10.b : aattctcgaggggccaaactatcgcacccgtttttgtgaaaaggggtcccaaaggggcca
OVR01_0004_D10.b : aaaaaaaaaaaaaggggggcccacccaatttggggggcctctc
20060611C-001115 : ............................................................
---------+---------+---------+---------+---------+---------+ 1184
MLN01_0069_F02.b : accgcgtgggaaactt
SPL01_0044_G05.b :
ITT01_0052_C10.b : tataaacaagacgtggcgggcttttaagcccggcggagacacttactgggaatttaaaga
OVR01_0004_D10.b :
20060611C-001115 : ............................................................
---------+---------+---------+---------+---------+---------+ 1184
MLN01_0069_F02.b :
SPL01_0044_G05.b :
ITT01_0052_C10.b : actctcttcggtggcaattggccacacccccaattaacgccgggaaaaaattttgggtag
OVR01_0004_D10.b :
20060611C-001115 : ............................................................
---------+---------+---------+---------+---------+---------+ 1184
MLN01_0069_F02.b :
SPL01_0044_G05.b :
ITT01_0052_C10.b : gtgtaaccccttcttgcgcgaaattcccaaaat
OVR01_0004_D10.b :
TOP
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