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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20060611C-003420

Length: 1,560

Sequence [FASTA format sequence]
TGTATATATA TGGCAAATTC ACTTAAAGGA CCAGCTACTG ATTGAGTCCA ACTAGATAGG
GCAGCCCACA TCAACTTTTT CACTGACACC GTGTGACAGT CTTGAGGCTA AACACTAAAG
ATTGAGTTCC TGTTGTGGCT CAGTGGGTTA AGGACCTGAT GTTGTCTCTG AGCGAGGCCA
GGGATCGAAC CTGCGACCTC CTGGATGCTA GTCAGATTCC TTAACCGCTG AGCCACGACG
GGAACTCCAG GAATATATAT TTTTAGATGA GGAAACAGGC TGATATATTG GAAAGACATA
AGGAGGATTG CATCCGGATG CGGCAGCTGT ATGATTGGGA TCCGGGGGGT CCCTCCAGAA
CTGCGCCGCG CATTGCAGCA GGAAGAGCAT AACTTTGGGG GACCCGCGCG TGGGCCCCGC
CCCTCAACCC CTTTCCAGAG ACATTGGCCA CGCCCCCTGA TCCGGCCCCG CCCCGGGCTC
CCGAAACGAC CATTCCCAGC TGTAGCTGCG CTCGCAGCCC GTCCCCATTG GTCGCTCCCC
TGGAAGCCCC GCCCCCTGCC CCTTTCCGGA AGCTGCGTGT TGCAGCCGCG CCCGCCCTGC
CCCAAGTGTA TCCCAGGCGG CGAGCCCCTA GCACCTGCTG CGGTTGAGGG TCTGCGGGCT
GCTGCGGTTG GACCCCGGCT CCACCCGGCA TGAACCGCTA CATTCTGCCG CTGTCCGTGC
TGGGCACGGC GGTGGGTGGC GCCGTGCTGC TCAAGGACTT TGTTGCTGGA GGGGCTTGTC
CCAGCAAGGC CACCATTCCC GGGAAGACTG TCATTGTGAC AGGTGCCAAC ACGGGCATCG
GGAAGCAGAC GGCCCTGGAG CTGGCCAAGA GAGGAGGCAA CATCATTCTG GCCTGCCGAG
ACCTGGAGAA GTGTGAGGCG GCGGCCAAGG ACATTCGCGG GGAAACCCTG AATCACCGCG
TCAGCGCCCG GCACCTGGAC TTGGCCTCCC TGACGTCCGT CCGAGAGTTT GCAGCCAAGA
TCAACGAAGA GGAGGAGCAC CTGCACGTCC TGATCAACAA CGCTGCCGTG ATGCGGTGCC
CCCACTGGAC CACGGAGGAT GGCTTTGAGA TGCAGCTTGG CGTTAACTAC CTGGGTCACT
TTCTTTTGAC CAACTTGCTG CTGGACAAGC TGAAAGCCTC TGCCCCCTCT CGAATCATCA
ACCTCTCGTC CTTGGCCCAC GTTGCTGGGC ACATCGACTT TGACGACCTG AACTGGGAAA
AGAGGAAGTA CGACACAAAG GCAGCCTACT GCCAGAGTAA GCTGGCGCTG GTCCTCTTCT
CCATGGAACT GAGCCAGCGG CTGCAAGGCA CGGGCGTCAC GGTCAATGCC CTGCACCCTG
GCGTGGCCAG GACCGAGCTG GGCAGACACA CGGGCATGCA CAATTCTGCC TTCTCCAGCT
TCACGCTCGG GCCCATCTTC TGGCTGCTGG TCAAGAGCCC CCAGCTGGCA GCTCAGCCCA
GCACGTACCT GGCCGTGGCC GAGGAGCTGG AGAGCGTCTC CGGCAAGTAC TTTGATGGAT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRDH13retinol dehydrogenase 13 (all-trans/9-cis)369e-102O
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)2564e-68O
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)2493e-66O
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)2233e-58O
Contig/Assembly ProteinDHRSXdehydrogenase/reductase (SDR family) X-linked1781e-44O
Contig/Assembly ProteinMGC23280hypothetical protein MGC232801602e-39O
Contig/Assembly ProteinWWOXWW domain containing oxidoreductase1551e-37O
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 187.43e-17
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 187.43e-17
Contig/Assembly ProteinDHRS8dehydrogenase/reductase (SDR family) member 866.27e-11O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Members: 3      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
ITT010030H02ITT01_0030_H02.bBW978736 
SPL010001E10SPL01_0001_E10.bBP158273 
UTR010018G08UTR01_0018_G08.bBP172888 AK239989

  

Alignment:      TOP

20060611C-003420 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
UTR01_0018_G08.b : gggcacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0030_H02.b :
SPL01_0001_E10.b :
20060611C-003420 : ...................TGTATATATATGGCAAATTCACTTAAAGGACCAGCTACTGA
---------+---------+---------+---------+---------+---------+ 41
UTR01_0018_G08.b : xxxxxxxxxxxxxxxxxxxTGTATATATATGGCAAATTCACTTAAAGGACCAGCTACTGA
ITT01_0030_H02.b :
SPL01_0001_E10.b :
20060611C-003420 : TTGAGTCCAACTAGATAGGGCAGCCCACATCAACTTTTTCACTGACACCGTGTGACAGTC
---------+---------+---------+---------+---------+---------+ 101
UTR01_0018_G08.b : TTGAGTCCAACTAGATAGGGCAGCCCACATCAACTTTTTCACTGACACCGTGTGACAGTC
ITT01_0030_H02.b :
SPL01_0001_E10.b :
20060611C-003420 : TTGAGGCTAAACACTAAAGATTGAGTTCCTGTTGTGGCTCAGTGGGTTAAGGACCTGATG
---------+---------+---------+---------+---------+---------+ 161
UTR01_0018_G08.b : TTGAGGCTAAACACTAAAGATTgagttcctgttgtggctcagtgggttaaggacctgatg
ITT01_0030_H02.b :
SPL01_0001_E10.b :
20060611C-003420 : TTGTCTCTGAGCGAGGCCAGGGATCGAACCTGCGACCTCCTGGATGCTAGTCAGATTCCT
---------+---------+---------+---------+---------+---------+ 221
UTR01_0018_G08.b : ttgtctctgagcgaggccagggatcgaacctgcgacctcctggatgctagtcagattcct
ITT01_0030_H02.b :
SPL01_0001_E10.b :
20060611C-003420 : TAACCGCTGAGCCACGACGGGAACTCCAGGAATATATATTTTTAGATGAGGAAACAGGCT
---------+---------+---------+---------+---------+---------+ 281
UTR01_0018_G08.b : taaccgctgagccacgacgggaactccAGGAATATATATTTTTAGATGAGGAAACAGGCT
ITT01_0030_H02.b :
SPL01_0001_E10.b :
20060611C-003420 : GATATATTGGAAAGACATAAGGAGGATTGCATCCGGATGCGGCAGCTGTATGATTGGGAT
---------+---------+---------+---------+---------+---------+ 341
UTR01_0018_G08.b : GATATATTGGAAAGACATAAGGAGGATTGCATCCGGATGCGGCAGCTGTATGATTGGGAT
ITT01_0030_H02.b :
SPL01_0001_E10.b :
20060611C-003420 : CCGGGGGGTCCCTCCAGAACTGCGCCGCGCATTGCAGCAGGAAGAGCATAACTTTGGGGG
---------+---------+---------+---------+---------+---------+ 401
UTR01_0018_G08.b : CCGGGGGGTCCCTCCAGAACTGCGCCGCGCATTGCAGCAGGAAGAGCATAACTTTGGGGG
ITT01_0030_H02.b :
SPL01_0001_E10.b :
20060611C-003420 : ACCCGCGCGTGGGCCCCGCCCCTCAACCCCTTTCCAGAGACATTGGCCACGCCCCCTGAT
---------+---------+---------+---------+---------+---------+ 461
UTR01_0018_G08.b : ACCCGCGCGTGGGCCCCGCCCCTCAACCCCTTTCCAGAGACATTGGCCACGCCCCCTGAT
ITT01_0030_H02.b :
SPL01_0001_E10.b :
20060611C-003420 : CCGGCCCCGCCCCGGGCTCCCGAAACGACCATTCCCAGCTGTAGCTGCGCTCGCAGCCCG
---------+---------+---------+---------+---------+---------+ 521
UTR01_0018_G08.b : CCGGCCCCGCCCCGGGCTCCCGAAACGACCATTCCCAGCTGTAGCTGCGCTCGCAGCCCG
ITT01_0030_H02.b :
SPL01_0001_E10.b :
20060611C-003420 : TCCCCATTGGTCGCTCCCCTGGAAGCCCCGCCCCCTGCCCCTTTCCGGAAGCTGCGTGTT
---------+---------+---------+---------+---------+---------+ 581
UTR01_0018_G08.b : TCCCCATTGGTCGCTCCCCTGGAAGCCCCGCCCCCTGCCCCTTTCCGGAAGCTGCGTGTT
ITT01_0030_H02.b : nnggatgaacaxxxxxxxxxxxxxxxxx
SPL01_0001_E10.b : txxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20060611C-003420 : GCAGCCGCGCCCGCCCTGCCCCAAGTGTATCCCAGGCGGCGAGCCCCTAGCACCTGCTGC
---------+---------+---------+---------+---------+---------+ 641
UTR01_0018_G08.b : GCAGCCGCGCCCGCCCTGCCCCAAGTGTATCCCAGGCGGCGAGCCCCTAGCACCTGCTGC
ITT01_0030_H02.b : xxxxxxxxxxxxxxxxxxxxxxxxxaGTATCCCAGGCGGCGAGCCCCTAGCACCTGCTGC
SPL01_0001_E10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGTATCCCAGGCGGCGAGCCCCTAGCACCTGCTGC
20060611C-003420 : GGTTGAGGGTCTGCGGGCTGCTGCGGTTGGACCCCGGCTCCACCCGGCATGAACCGCTAC
---------+---------+---------+---------+---------+---------+ 701
UTR01_0018_G08.b : GGTTGAGGGTCTGCGGGCTGCTGCGGTTGGACCCCGGCTCCACCCGGCATGAACCGCTAC
ITT01_0030_H02.b : GGTTGAGGGTCTGCGGGCTGCTGCGGTTGGACCCCGGCTCCACCCGGCATGAACCGCTAC
SPL01_0001_E10.b : GGTTGAGGGTCTGCGGGCTGCTGCGGTTGGACCCCGGCTCCACCCGGCATGAACCGCTAC
20060611C-003420 : ATTCTGCCGCTGTCCGTGCTGGGCACGGCGGTGGGTGGCGCCGTGCTGCTCAAGGACTTT
---------+---------+---------+---------+---------+---------+ 761
UTR01_0018_G08.b : ATTCTGCCGCTGTCCGTGCTGGGCACGGCGGTGGGTGGCGCCGTGCTGCTCAAGtgagta
ITT01_0030_H02.b : ATTCTGCCGCTGTCCGTGCTGGGCACGGCGGTGGGTGCCGCCGTGCTGCTCAAGGACTTT
SPL01_0001_E10.b : ATTCTGCCGCTGTCCGTGCTGGGCACGGCGGTGGGTGGCGCCGTGCTGCTCAAGGACTTT
20060611C-003420 : GTTGCTGGAGGGGCTTGTCCCAGCAAGGCCACCATTCCCGGGAAGACTGTCATTGTGACA
---------+---------+---------+---------+---------+---------+ 821
UTR01_0018_G08.b : ggtgcgggccccgcgggcgcgggaacggtgagcaggtgggcgagctcaaggctgggtgga
ITT01_0030_H02.b : GTTGCTGGAGGGGCTTGTCCCAGCAAGGCCACCATTCCCGGGAAGACTGTCATTGTGACA
SPL01_0001_E10.b : GTTGCTGGAGGGGCTTGTCCCAGCAAGGCCACCATTCCCGGGAAGACTGTCATTGTGACA
20060611C-003420 : GGTGCCAACACGGGCATCGGGAAGCAGACGGCCCTGGAGCTGGCCAAGAGAGGAGGCAAC
---------+---------+---------+---------+---------+---------+ 881
UTR01_0018_G08.b : gctcgccaacctctccccgaccctggagtccttcagctcacctgtcccgcggtgggcc
ITT01_0030_H02.b : GGTGCCAACACGGGCATCGGGAAGCAGACGGCCCTGGAGCTGGCCAAGAGAGGAGGCAAC
SPL01_0001_E10.b : GGTGCCAACACGGGCATCGGGAAGCAGACGGCCCTGGAGCTGGCCAAGAGAGGAGGCAAC
20060611C-003420 : ATCATTCTGGCCTGCCGAGACCTGGAGAAGTGTGAGGCGGCGGCCAAGGACATTCGCGGG
---------+---------+---------+---------+---------+---------+ 941
UTR01_0018_G08.b :
ITT01_0030_H02.b : ATCATTCTGGCCTGCCGAGACCTGGAGAAGTGTGAGGCGGCGGCCAAGGACATTCGCGGG
SPL01_0001_E10.b : ATCATTCTGGCCTGCCGAGACCTGGAGAAGTGTGAGGCGGCGGCCAAGGACATTCGCGGG
20060611C-003420 : GAAACCCTGAATCACCGCGTCAGCGCCCGGCACCTGGACTTGGCCTCCCTGACGTCCGTC
---------+---------+---------+---------+---------+---------+ 1001
UTR01_0018_G08.b :
ITT01_0030_H02.b : GAAACCCTGAATCACCGCGTCAGCGCCCGGCACCTGGACTTGGCCTCCCTGACGTCCGTC
SPL01_0001_E10.b : GAAACCCTGAATCACCGCGTCAGCGCCCGGCACCTGGACTTGGCCTCCCTGACGTCCGTC
20060611C-003420 : CGAGAGTTTGCAGCCAAGATCAACGAAGAGGAGGAGCACCTGCACGTCCTGATCAACAAC
---------+---------+---------+---------+---------+---------+ 1061
UTR01_0018_G08.b :
ITT01_0030_H02.b : CGAGAGTTTGCAGCCAAGATCAACGAAGAGGAGGAGCACCTGCACGTCCTGATCAACAAC
SPL01_0001_E10.b : CGAGAGTTTGCAGCCAAGATCAACGAAGAGGAGGAGCACCTGCACGTCCTGATCAACAAC
20060611C-003420 : GCTGCCGTGATGCGGTGCCCCCACTGGACCACGGAGGATGGCTTTGAGATGCAGCTTGGC
---------+---------+---------+---------+---------+---------+ 1121
UTR01_0018_G08.b :
ITT01_0030_H02.b : GCTGCCGTGATGCGGTGCCCCCACTGGACCACGGAGGATGGCTTTGAGATGCAGCTTGGC
SPL01_0001_E10.b : GCTGCCGTGATGCGGTGCCCCCACTGGACCACGGAGGATGGCTTTGAGATGCAGCTTGGC
20060611C-003420 : GTTAACTACCTGGGTCACTTTCTTTTGACCAACTTGCTGCTGGACAAGCTGAAAGCCTCT
---------+---------+---------+---------+---------+---------+ 1181
UTR01_0018_G08.b :
ITT01_0030_H02.b : GTTAACTACCTGGGTCACTTTCTTTTGACCAACTTGCTGCTGGACAAGCTGAAAGCCTCT
SPL01_0001_E10.b : GTTAACTACCTGGGTCACTTTCTTTTGACCAACTTGCTGCTGGACAAGCTGAAAGCCTCT
20060611C-003420 : GCCCCCTCTCGAATCATCAACCTCTCGTCCTTGGCCCACGTTGCTGGGCACATCGACTTT
---------+---------+---------+---------+---------+---------+ 1241
UTR01_0018_G08.b :
ITT01_0030_H02.b : GCCCCCTCTCGAATCATCAACCTCTCGTCCTTGGCCCACGTTGCTGGGCACATCGACTTT
SPL01_0001_E10.b : GCCCCCTCGCGAATCATCAACCTCTCGTCCTTGGCCCACGTTGCTGGGCACATCGACTTT
20060611C-003420 : GACGACCTGAACTGGGAAAAGAGGAAGTACGACACAAAGGCAGCCTACTGCCAGAGTAAG
---------+---------+---------+---------+---------+---------+ 1301
UTR01_0018_G08.b :
ITT01_0030_H02.b : GACGACCTGAACTGGGAAAAGAGGAAGTACGACACAAAGGCAGCCTACTGCCAGAGTAAG
SPL01_0001_E10.b : GACGACCTGAACTGGGAAAAGAGGAAGCACGACACAAAGGCAGCCTACTGCCAGAGTAAG
20060611C-003420 : CTGGCGCTGGTCCTCTTCTCCATGGAACTGAGCCAGCGGCTGCAAGGCACGGGCGTCACG
---------+---------+---------+---------+---------+---------+ 1361
UTR01_0018_G08.b :
ITT01_0030_H02.b : CTGGCGCTGGTCCTCTTCTCCATGGAACTGAGCCGGCGGCTGCAAGGCACGGGCGTCACG
SPL01_0001_E10.b : CTGGCGCTGGTCCTCTTCTCCATGGAACTGAGCCAGCGGCTGCAAGGCACGGGCGTCACG
20060611C-003420 : GTCAATGCCCTGCACCCTGGCGTGGCCAGGACCGAGCTGGGCAGACACACGGGCATGCAC
---------+---------+---------+---------+---------+---------+ 1421
UTR01_0018_G08.b :
ITT01_0030_H02.b : GTCAATGCCCTGCACCCTGGCGTGGCCAGGACCGAGCTGGGCAGACACACGGGCATGCAC
SPL01_0001_E10.b : GTCAATGCCCTGCACCCTGGCGTGGCCAGGACCGAGCTGGGCAGACACACGGGCATGCAC
20060611C-003420 : AATTCTGCCTTCTCCAGCTTCACGCTCGGGCCCATCTTCTGGCTGCTGGTCAAGAGCCCC
---------+---------+---------+---------+---------+---------+ 1481
UTR01_0018_G08.b :
ITT01_0030_H02.b : AATTCTGCCTTCTCCAGCTTCACGCTCGGGCCCATCTTCTGGCTGCTGGTCAAGAGCCCC
SPL01_0001_E10.b : AATTCTGCCTTCTCCAGCTTCACGCTCGGGGCCATCTTCTGGCTGCTGGTCAAGAGCCCC
20060611C-003420 : CAGCTGGCAGCTCAGCCCAGCACGTACCTGGCCGTGGCCGAGGAGCTGGAGAGCGTCTCC
---------+---------+---------+---------+---------+---------+ 1541
UTR01_0018_G08.b :
ITT01_0030_H02.b : CAGCTGGCAGCCCAGCCCAGCACGTACCTGGCCGTGGCCGAAGAGCTGGAAAGCGTCTCC
SPL01_0001_E10.b : CAGCTGGCAGCTCAGCCCAGCACGTACCTGGCCGTGGCCGAGGAGCTGGAGAGCGTCCTC
20060611C-003420 : GGCAAGTACTTTGATGGAT.........................................
---------+---------+---------+---------+---------+---------+ 1560
UTR01_0018_G08.b :
ITT01_0030_H02.b : GGCAAGTACTTTGATGGATtcagagagaaggctccgggcccccgaactgaaagatgagag
SPL01_0001_E10.b : GGGCAGTACTTTGATGGATtcagagagaagggctccggccccccaaagctgagggatgaa
20060611C-003420 : ............................................................
---------+---------+---------+---------+---------+---------+ 1560
UTR01_0018_G08.b :
ITT01_0030_H02.b : gtagcccgaagctttgggcctgaagtgcccgcctggtgggcttggaactgtcctctggag
SPL01_0001_E10.b : ggagggtagcccaaaaggcttttgggcctgaaaattggcc
20060611C-003420 : ............................................................
---------+---------+---------+---------+---------+---------+ 1560
UTR01_0018_G08.b :
ITT01_0030_H02.b : ccctccaaaggggacaccccctccccagtaacccctgaaagccaacagggaggcagcgtc
SPL01_0001_E10.b :
20060611C-003420 : ............................................................
---------+---------+---------+---------+---------+---------+ 1560
UTR01_0018_G08.b :
ITT01_0030_H02.b : ccggtcaggggcggaccaccccccaacaggttgaccgcatgcttgcccacccctaggggg
SPL01_0001_E10.b :
20060611C-003420 : ............................................................
---------+---------+---------+---------+---------+---------+ 1560
UTR01_0018_G08.b :
ITT01_0030_H02.b : catatggccaaggaaggtgctgcaagccccaacacccctagggggatatctccctctggc
SPL01_0001_E10.b :
20060611C-003420 : ............................................................
---------+---------+---------+---------+---------+---------+ 1560
UTR01_0018_G08.b :
ITT01_0030_H02.b : cagggtggccctaacgggggttctgggaagtgtacta
SPL01_0001_E10.b :