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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20060611C-005278

Length: 1,193

Sequence [FASTA format sequence]
AGGGTATTTC CGGTTCGGCA TGCCACTGCT CGGTCTTTTC CTCAGCCGGG CCTCGGCGTG
AGAGGCCGTG CAGGTCGTCT CTCTGAGCTA TCCGGTACCA TCCTCGTCGC TCCGGCGACA
TCTGCATCTG CTGCCGCCAT GACTGAACAG ATGACTCTCC GTGGCACCCT CAAGGGCCAT
AACGGCTGGG TGACCCAGAT TGCTACCACT CCCCAGTTCC CGGACATGAT ACTGTCCGCT
TCTCGAGACA AGACCATCAT CATGTGGAAG CTGACCAGAG ATGAGACCAA TTATGGAATC
CCACAGCGTG CTCTTCGGGG TCACTCCCAC TTTGTTAGTG ACGTGGTCAT CTCCTCAGAT
GGCCAGTTTG CCCTCTCGGG CTCCTGGGAT GGAACCCTTC GCCTCTGGGA TCTCACAACG
GGCACCACCA CGCGCCGATT TGTAGGCCAT ACTAAGGATG TGCTGAGTGT GGCCTTCTCC
TCTGACAACC GACAAATTGT CTCTGGCTCC CGAGATAAAA CCATCAAGCT ATGGAATACT
CTGGGTGTGT GCAAATACAC TGTCCAGGAT GAGAGCCACT CAGAGTGGGT GTCTTGTGTC
CGCTTCTCAC CCAACAGCAG CAATCCCATT ATTGTTTCCT GTGGCTGGGA CAAGCTGGTC
AAGGTATGGA ACTTGGCTAA CTGCAAGCTG AAAACCAATC ACATCGGCCA CACAGGCTAC
CTGAACACTG TGACTGTCTC TCCAGATGGA TCCCTCTGTG CTTCTGGAGG CAAGGATGGC
CAGGCCATGT TGTGGGACCT TAATGAAGGC AAGCACCTTT ACACGCTAGA TGGTGGGGAT
ATCATCAATG CCCTGTGCTT CAGTCCCAAT CGCTACTGGC TCTGTGCTGC TACAGGCCCT
AGCATCAAGA TCTGGGACTT GGAGGGCAAG ATCATTGTAA ATGAACTGAA GCAGGAAGTT
ATCAGTACCA GCAGCAAAGC AGAACCGCCC CAGTGTACCT CTCTGGGCCT GGTCTGCTGA
TGGCCCAAAC TCTGTTTGCT GGCTACCCAA ACCACCTTGG TTGCGAAGGG GGGGGAGGTG
AACCTTTTGC CCCCCCCCTA AAAAACTGGG CAAAAACTTT TAAAAAAAAA AAAAAAAACT
GGGGTTTTTT TTCTTTGAAT TATAAAAAAA AAAAAAAAAA AAAAAAAAAA AAA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinGNB2L1guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1602e-171O
Contig/Assembly ProteinLOC643534similar to Guanine nucleotide-binding protein beta subunit 2-like 1 (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase)2671e-71O
Contig/Assembly ProteinLOC647756similar to Guanine nucleotide-binding protein beta subunit 2-like 1 (Receptor of activated protein kinase C 1) (RACK1) (Receptor for activated C kinase)2671e-71O
Contig/Assembly ProteinPAFAH1B1platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa1264e-29
Contig/Assembly ProteinWDR5BWD repeat domain 5B1142e-25O
Contig/Assembly ProteinWDR5WD repeat domain 51125e-25O
Contig/Assembly ProteinWDR5WD repeat domain 51125e-25O
Contig/Assembly ProteinWDR51BWD repeat domain 51B1102e-24O
Contig/Assembly ProteinLOC644529similar to CG7704-PA1063e-23O
Contig/Assembly ProteinWDR69WD repeat domain 691064e-23


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LNG010009A05LNG01_0009_A05.bBP433336 
LNG010047A04LNG01_0047_A04.bBP433282 
OVR010048D10OVR01_0048_D10.bBP142956 
TES010004C12TES01_0004_C12.bCJ030247 

  

Alignment:      TOP

20060611C-005278 : ..........................................................AG
---------+---------+---------+---------+---------+---------+ 2
TES01_0004_C12.b : ttctactgttgctatAG
LNG01_0009_A05.b : gagtttttnaacagcattgtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0048_D10.b : gggacatxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LNG01_0047_A04.b : cgcctcccccccagcaatgtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20060611C-005278 : GGTATTTCCGGTTCGGCATGCCACTGCTCGGTCTTTTCCTCAGCCGGGCCTCGGCGTGAG
---------+---------+---------+---------+---------+---------+ 62
TES01_0004_C12.b : GGTATTTCCGGTTCGGCATGCCACTGCTCGGTCTTTTCCTCAGCCGGGCCTCGGCGTGAG
LNG01_0009_A05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTTTTTTTCCTCAGCCGGGCCTCGGCGTGAG
OVR01_0048_D10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTTTCCTCAGCCGGGCCTCGGCGTGAG
LNG01_0047_A04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTCCTCAGCCGGGCCTCGGCGTGAG
20060611C-005278 : AGGCCGTGCAGGTCGTCTCTCTGAGCTATCCGGTACCATCCTCGTCGCTCCGGCGACATC
---------+---------+---------+---------+---------+---------+ 122
TES01_0004_C12.b : AGGCCGTGCAGGTTGTCTCTCTGAGCTATCCGGTACCATCCTCGTCGCTCCGGCGACATC
LNG01_0009_A05.b : AGGCCGTGCAGGTCGTCTCTCTGAGCTATCCGGTACCATCCTCGTCGCTCCGGCGACATC
OVR01_0048_D10.b : AGGCCGTGCAGGTTGTCTCTCTGAGCTATCCGGTACCGTCCTCGTCGCTCCGGCGACATC
LNG01_0047_A04.b : AGGCCGTGCAGGTCGTCTCTCTGAGCTATCCGGTACCATCCTCGTCGCTCCGGCGACATC
20060611C-005278 : TGCATCTGCTGCCGCCATGACTGAACAGATGACTCTCCGTGGCACCCTCAAGGGCCATAA
---------+---------+---------+---------+---------+---------+ 182
TES01_0004_C12.b : TGCATCTGCTGCCGCCATGACTGAACAGATGACTCTCCGTGGCACCCTCAAGGGCCATAA
LNG01_0009_A05.b : TGCATCTGCTGCCGCCATGACTGAACAGATGACTCTCCGTGGCACCCTCAAGGGCCATAA
OVR01_0048_D10.b : TGCATCTGCTGCCGCCATGACTGAACAGATGACTCTCCGTGGCACCCTCAAGGGCCATAA
LNG01_0047_A04.b : TGCATCTGCTGCCGCCATGACTGAACAGATGACTCTCCGTGGCACCCTCAAGGGCCATAA
20060611C-005278 : CGGCTGGGTGACCCAGATTGCTACCACTCCCCAGTTCCCGGACATGATACTGTCCGCTTC
---------+---------+---------+---------+---------+---------+ 242
TES01_0004_C12.b : CGGCTGGGTGACCCAGATTGCTACCACTCCCCAGTTCCCGGACATGATACTGTCCGCTTC
LNG01_0009_A05.b : CGGCTGGGTGACCCAGATTGCTACCACTCCCCAGTTCCCGGACATGATACTGTCCGCTTC
OVR01_0048_D10.b : CGGCTGGGTGACCCAGATTGCTACCACTCCCCAGTTCCCGGACATGATACTGTCCGCTTC
LNG01_0047_A04.b : CGGCTGGGTGACCCAGATTGCTACCACTCCCCAGTTCCCGGACATGATACCGTCCGCTTC
20060611C-005278 : TCGAGACAAGACCATCATCATGTGGAAGCTGACCAGAGATGAGACCAATTATGGAATCCC
---------+---------+---------+---------+---------+---------+ 302
TES01_0004_C12.b : TCGAGACAAGACCATCATCATGTGGAAGCTGACCAGAGATGAGACCAATTATGGAATCCC
LNG01_0009_A05.b : TCGAGACAAGACCATCATCATGTGGAAGCTGACCAGAGATGAGACCAATTATGGAATCCC
OVR01_0048_D10.b : TCGAGACAAGACCATCATCATGTGGAAGCTGACCAGAGATGAGACCAATTATGGAATCCC
LNG01_0047_A04.b : TCGAGACAAGACCATCATCATGTGGAAGCTGACCAGAGATGAGACCAATTATGGAATCCC
20060611C-005278 : ACAGCGTGCTCTTCGGGGTCACTCCCACTTTGTTAGTGACGTGGTCATCTCCTCAGATGG
---------+---------+---------+---------+---------+---------+ 362
TES01_0004_C12.b : ACAGCGTGCTCTTCGGGGTCACTCCCACTTTGTTAGTGACGTGGTCATCTCCTCAGATGG
LNG01_0009_A05.b : ACAGCGTGCTCTTCGGGGTCACTCCCACTTTGTTAGTGACGTGGTCATCTCCTCAGATGG
OVR01_0048_D10.b : ACAGCGTGCTCTTCGGGGTCACTCCCACTTTGTTAGTGACGTGGTCATCTCCTCAGATGG
LNG01_0047_A04.b : ACAGCGTGCTCTTCGGGGTCACTCCCACTTTGTTAGTGACGTGGTCATCTCCTCAGATGG
20060611C-005278 : CCAGTTTGCCCTCTCGGGCTCCTGGGATGGAACCCTTCGCCTCTGGGATCTCACAACGGG
---------+---------+---------+---------+---------+---------+ 422
TES01_0004_C12.b : CCAGTTTGCCCTCTCGGGCTCCTGGGATGGAACCCTTCGCCTCTGGGATCTCACAACGGG
LNG01_0009_A05.b : CCAGTTTGCCCTCTCGGGCTCCTGGGATGGAACCCTTCGCCTCTGGGATCTCACAACGGG
OVR01_0048_D10.b : CCAGTTTGCCCTCTCGGGCTCCTGGGATGGAACCCTTCGCCTCTGGGATCTCACAACGGG
LNG01_0047_A04.b : CCAGTTTGCCCTCTCGGGCTCCTGGGATGGAACCCTTCGCCTCTGGGATCTCACAACGGG
20060611C-005278 : CACCACCACGCGCCGATTTGTAGGCCATACTAAGGATGTGCTGAGTGTGGCCTTCTCCTC
---------+---------+---------+---------+---------+---------+ 482
TES01_0004_C12.b : CACCACCACGCGCCGATTTGTAGGCCATATTAAGGATGTGCTGAGTGTGGCCTTCTCTTC
LNG01_0009_A05.b : CACCACCACGCGCCGATTTGTAGGCCATACTAAGGATGTGCTGAGTGTGGCCTTCTCCTC
OVR01_0048_D10.b : CACCACCACGCGCCGATTTGTAGGCCATACTAAGGATGTGCTGAGTGTGGCCTTCTCCTC
LNG01_0047_A04.b : CACCACCACGCGCCGATTTGTAGGCCATACTAAGGATGTGCTGAGTGTGGCCTTCTCCTC
20060611C-005278 : TGACAACCGACAAATTGTCTCTGGCTCCCGAGATAAAACCATCAAGCTATGGAATACTCT
---------+---------+---------+---------+---------+---------+ 542
TES01_0004_C12.b : TGACAACCGACAAATTGTCTCTGGCTCCCGAGATAAAACCATCAAGCTATGGAATACTCT
LNG01_0009_A05.b : TGACAACCGACAAATTGTCTCTGGCTCCCGAGATAAAACCATCAAGCTATGGAATACTCT
OVR01_0048_D10.b : TGACAACCGACAAATTGTCTCTGGCTCCCGAGATAAAACCATCAAGCTATGGAATACTCT
LNG01_0047_A04.b : TGACAACCGACAAATTGTCTCTGGCTCCCGAGATAAAACCATCAAGCTATGGAATACTCT
20060611C-005278 : GGGTGTGTGCAAATACACTGTCCAGGATGAGAGCCACTCAGAGTGGGTGTCTTGTGTCCG
---------+---------+---------+---------+---------+---------+ 602
TES01_0004_C12.b : GGGTGTGTGCAAATACACTGTCCAGGATGAGAGCCACTCAGAGTGGGTGTCTTGTGTCCG
LNG01_0009_A05.b : GGGTGTGTGCAAATACACTGTCCAGGATGAGAGCCACTCAGAGTGGGTGTCTTGTGTCCG
OVR01_0048_D10.b : GGGTGTGTGCAAATACACTGTCCAGGATGAGAGCCACTCAGAGTGGGTGTCTTGTGTCCG
LNG01_0047_A04.b : GGGTGTGTGCAAATACACTGTCCAGGATGAGAGCCACTCAGAGTGGGTGTCTTGTGTCCG
20060611C-005278 : CTTCTCACCCAACAGCAGCAATCCCATTATTGTTTCCTGTGGCTGGGACAAGCTGGTCAA
---------+---------+---------+---------+---------+---------+ 662
TES01_0004_C12.b : CTTCTCACCCAACAGCAGCAATCCCATTATTGTTTCCTGTGGCTGGGACAAGCTGGTCAA
LNG01_0009_A05.b : CTTCTCACCCAACAGCAGCAATCCCATTATTGTTTCCTGTGGCTGGGACAAGCTGGTCAA
OVR01_0048_D10.b : CTTCTCACCCAACAGCAGCAATCCCATTATTGTTTCCTGTGGCTGGGACAAGCTGGTCAA
LNG01_0047_A04.b : CTTCTCACCCAACAGCAGCAATCCCATTATTGTTTCCTGTGGCTGGGACAAGCTGGTCAA
20060611C-005278 : GGTATGGAACTTGGCTAACTGCAAGCTGAAAACCAATCACATCGGCCACACAGGCTACCT
---------+---------+---------+---------+---------+---------+ 722
TES01_0004_C12.b : GGTATGGAACTTGGCTAACTGCAAGCTGAAAACCAATCACATCGGCCACACAGGCTACCT
LNG01_0009_A05.b : GGTATGGAACTTGGCTAACTGCAAGCTGAAAACCAATCACATCGGCCACACAGGCTACCT
OVR01_0048_D10.b : GGTATGGAACTTGGCTAACTGCAAGCTGAAAACCAATCACATCGGCCACACAGGCTACCT
LNG01_0047_A04.b : GGTATGGAACTTGGCTAACTGCAAGCTGAAAACCAATCACATCGGCCACACAGGCTACCT
20060611C-005278 : GAACACTGTGACTGTCTCTCCAGATGGATCCCTCTGTGCTTCTGGAGGCAAGGATGGCCA
---------+---------+---------+---------+---------+---------+ 782
TES01_0004_C12.b : GAACACTGTGACTGTCTCTCCAGATGGATCCCTCTGTGCTTCTGGAGGCAAGGATGGCCA
LNG01_0009_A05.b : GAACACTGTGACTGTCTCTCCAGATGGACCCCTCTGTGCTTCTGGAGGCAAGGATGGCCA
OVR01_0048_D10.b : GAACACTGTGACTGTCTCTCCAGATGGATCCCTCTGTGCTTCTGGAGGCAAGGATGGCCA
LNG01_0047_A04.b : GAACACTGTGACTGTCTCTCCAGATGGATCCCTCTGTGCTTCTGGAGGCAAGGATGGCCA
20060611C-005278 : GGCCATGTTGTGGGACCTTAATGAAGGCAAGCACCTTTACACGCTAGATGGTGGGGATAT
---------+---------+---------+---------+---------+---------+ 842
TES01_0004_C12.b : GGCCATGTTGTGGGACCTTAATGAAGGCAAGCACCTTTACACGCTAGATGGTGGGGATAT
LNG01_0009_A05.b : GGCCATGTTGTGGGACCTTAATGAAGGCAAGCACCTTTACACGCTAGATGGTGGGGATAT
OVR01_0048_D10.b : GGCCATGTTGTGGGACCTTAATGAAGGCAAGCACCTTTACACGCTAGATGGTGGGGATAT
LNG01_0047_A04.b : GGCCATGTTGTGGGACCTTAATGAAGGCAAGCACCTTTACACGCTAGATGGTGGGGATAT
20060611C-005278 : CATCAATGCCCTGTGCTTCAGTCCCAATCGCTACTGGCTCTGTGCTGCTACAGGCCCTAG
---------+---------+---------+---------+---------+---------+ 902
TES01_0004_C12.b : CATCAATGCCCTGTGCTTCAGTCCCAATCGCTACTGGCTCTGTGCTGCTACAGGCCCTAN
LNG01_0009_A05.b : CATCAATGCCCTGTGCTTCAGTCCCAATCGCTACTGGCTCTGTGCTGCTACAGGCCCTAG
OVR01_0048_D10.b : CATCAATGCCCTGTGCTTCAGTCCCAATCGCTACTGGCTCTGTGCTGCTACAGGCCCTAG
LNG01_0047_A04.b : CATCAATGCCCTGTGCTTCAGTCCCAATCGCTACTGGCTCTGTGCTGCTACAGGCCCTAG
20060611C-005278 : CATCAAGAT*CTGGGACTTGGAGGGCAAGATCA*TTGTAAATGAAC*TGAAGCAGGAAGT
---------+---------+---------+---------+---------+---------+ 959
TES01_0004_C12.b : CATCAAGATTCTGGGACTTGGAGGGCAAGAACATTTGTAAATGAACCTGAAGCAGGAAAT
LNG01_0009_A05.b : CATCAAGAT*CTGGGACTTGGAGGGGCAGATCA*TTGTAGATGAAC*TGAAGCAGGAAGG
OVR01_0048_D10.b : CATCCAGAT*CTGGGACTTGGAGGGCAAGATCATTGTAAAATGAAC*TGAAACAGGAAGT
LNG01_0047_A04.b : CATNCAGAT*CTGGGACTTGGAGGGCAAGATCA*TTGTAGATGAAC*TGAAGCAGGAAGT
20060611C-005278 : TATCAGT*ACCAGCAGCAAAGCAGAACC*GCCCCAGTGTACCT*CTCTGGGCCTGGTCTG
---------+---------+---------+---------+---------+---------+ 1016
TES01_0004_C12.b : TATCAGT*ACCAGCAGCAAAACAGAAAC*CCCCCCATGTACCT*CTCTGGCCCTGGTCTG
LNG01_0009_A05.b : TATCAGT*ACCAGCAGCAAAGCAGAACC*GCCCCAGTGTACTT*CTCTTGGCCTGGTCTG
OVR01_0048_D10.b : TATCAATTACCAGCAGCAAAGCAAAACCGGCCCCAGGGTACCTTCTCTGGCCTGGGCCTG
LNG01_0047_A04.b : TATCAGT*ACCAGCAGCAAAGCAGACCC*GCCCCAGTGTACCT*CTCTGGGCCTGGTCTG
20060611C-005278 : CTGAT*GGCCCAAACTCTG*TTTGCTGGC**TACCCAAA*CCACCTTGGTTGCGAAGGGG
---------+---------+---------+---------+---------+---------+ 1071
TES01_0004_C12.b : CTGAA*GGCCCAAACTCTGGTTTGCGGGC**TACCCAAA*CAAACCTG*TTGCCAATTGT
LNG01_0009_A05.b : CTGAT*GCCCCG*ACTCTG*TTTGCTGGC**TACCCAGA*CCACCTTGGTTGCAAAGGGG
OVR01_0048_D10.b : CTTAAGGGCCCAAACCCTGTTTTGCTGGGCTTACCCAAAACCACCTGGGTGGCGAAGGGG
LNG01_0047_A04.b : CTGAT*GGCC*AGACTCTG*TTTGCTGGC**TACCCAGA*CAACC**GGGTGCGAAGTGT
20060611C-005278 : GGGGA**GGTGAACCTTTTGCCCCCCCCC****TAAAAAAC**TGGGCAAAAA***CTTT
---------+---------+---------+---------+---------+---------+ 1120
TES01_0004_C12.b : GGCCA**GGGTAACCATTGGCCCCCCGCC****TAAAAAAA**TGGGCAAAAC***TTTT
LNG01_0009_A05.b : GGCAA**GGTGAACCTTTTGGCCCCCGCC****TAAAAAACC*TGGGCAAAAA***Cttt
OVR01_0048_D10.b : GGGGAAGGGGGACCCTTTTGGCCCCCCCCCCTTTAAAAAACATTGGGCAAAAAACttttt
LNG01_0047_A04.b : GGGCA**GGTGAACCATTGGCCCCCCGC*****TAGAAAACA*TGTGCAAAAA***Cttt
20060611C-005278 : TAAAAAA*AAAAAAAAAAACTGGGGTTTTTTTTCTTTGAATTATAAAAAAAAAAAAAAAA
---------+---------+---------+---------+---------+---------+ 1179
TES01_0004_C12.b : TAAAAAA*AAAAAAAcgtgggtn
LNG01_0009_A05.b : taaaaaa*taaaaaaaaaaCTGGGGTTTTTTTcttgaaactaaaaaa
OVR01_0048_D10.b : taaaaaataaaaaaaaaaaCTTGGGGTTTTTTTCTTTGAATTATaaaaaaaaaaaaaaaa
LNG01_0047_A04.b : ttaaaaa*aaaaaaaaaaaCTGGGGTTTTTTCTgtgatctnnnnnnnnnnnnnnnnnnnn
20060611C-005278 : AAAAAAAAAAAAAA..............................................
---------+---------+---------+---------+---------+---------+ 1193
TES01_0004_C12.b :
LNG01_0009_A05.b :
OVR01_0048_D10.b : aaaaaaaaaaaaaagggggccccccccaactgtgtggggggtc
LNG01_0047_A04.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
20060611C-005278 : ............................................................
---------+---------+---------+---------+---------+---------+ 1193
TES01_0004_C12.b :
LNG01_0009_A05.b :
OVR01_0048_D10.b :
LNG01_0047_A04.b : nn