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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20060611C-007581

Length: 1,042

Sequence [FASTA format sequence]
GCACTCCAGG AGGACACGCG GGCAGCTGGG GCGTGGGATT CCTGCAGAGA CCTCGGTGGA
GGGTCAGAGG CCCGCGCCGA GCCCGTGTCC ACGGGGGTCG CTCCTCCTCC GCTGGAGGGA
CTGACTTACA ATTTGGGTCC AGAGCGCACA GCGCGGGGCT ACGAGGGTGC GCAGTTCCCC
GGGTCCCCCG AGTCCCCGAC GCCCGGCGAG GAGATCTGGG TTTTCCAGCG CGCCCCGCAA
GACGCCTCTG CTCAGGAGCC CGGCGCCGGG GCCCCGCGAT GGCCGCGGGC CGCAGCCTCA
GGGAGCTGCT GCCGCGTGGG TGCCGGGGCG CCCCTCCCTA GCGGGGCGCA GCCTGCGCCC
GGTCCCCGCC CGACCAGCGG AATGGGGGGC GGAGGGTCTG CCCTGAGGGT CTGCGCGGAC
CACCGCGGGG GCATCAACTG GCTCAGCCTG AGCCCCGACG GGCAGCGCCT GCTGACGGGC
AGCGAGGACG GCACCGCCCG GCTCTGGAGC ACCGCGGACG GCCAGTGCTG CGCCCTCCTG
CAAGGACATG AAAGCTACGT GACCTTCTGC CAGCTGGAGG ACGAAGCTGC CTTCACGTGC
AGCGCTGACT GCACCATCCG GAAGTGGGAC GTGCTGACCG GGCAGTGTCT GCAGGTGTTC
CGGGGACACA CATCCATTGT GAACAGGATC CTGGTCACCA ACAACCAGCT CTTCAGCAGT
TCCTATGACC GGACAGCTCG CGCCTGGAGT GTAGACAAAG GGCAGGTGTC GCGGGAGTTC
CGGGGCCACC GCAACTGTGT GCTGACTCTA GCCTACTCTG CCCCCTGGGA CCTGCCTGGG
GCTCCCTGCG TGGAGGAGGC CGTGGCTGGG GGGCTTCTGG TGACGGGAAG CACAGACGGC
ACAGCCAAGG TGTGGCAAGT GGCCAGTGGC TGCTGCCACC AGACGCTGCG GGGCCACACG
GGCGCCGTGC TCTGCCTGGT GTTGGACACA CCTGGGCACA CAGCCTTCAC CGGCAGCACC
GACGCCACCA TCCGCGCCTG GG


SNP mapping information
SNP IDRel.Chr.Location (cM)
SNPW020670.9b189.9
SNPW020670.91b189.9


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinWD repeat domain 861902e-48O
Contig/Assembly Proteinsimilar to CG7704-PA1325e-31O
Contig/Assembly Proteinsimilar to CG7704-PA1295e-30O
Contig/Assembly ProteinF-box and WD-40 domain protein 7 (archipelago homolog, Drosophila)1124e-25
Contig/Assembly ProteinF-box and WD-40 domain protein 7 (archipelago homolog, Drosophila)1124e-25
Contig/Assembly ProteinF-box and WD-40 domain protein 7 (archipelago homolog, Drosophila)1124e-25
Contig/Assembly ProteinTAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa1094e-24
Contig/Assembly ProteinWD repeat domain 51002e-21O
Contig/Assembly ProteinWD repeat domain 51002e-21O
Contig/Assembly Proteinplatelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa1003e-21


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Members: 2      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
OVR010011G02OVR01_0011_G02.bBP143986 AK347335
OVR010031F06OVR01_0031_F06.bBP143692 AK347434

  

Alignment:      TOP

20060611C-007581 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVR01_0031_F06.b : aggcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0011_G02.b :
20060611C-007581 : .........................GCACTCCAGGAGGACACGCGGGCAGCTGGGGCGTG
---------+---------+---------+---------+---------+---------+ 35
OVR01_0031_F06.b : xxxxxxxxxxxxxxxxxxxxxxxxxGCACTCCAGGAGGACACGCGGGCAGCTGGGGCGTG
OVR01_0011_G02.b :
20060611C-007581 : GGATTCCTGCAGAGACCTCGGTGGAGGGTCAGAGGCCCGCGCCGAGCCCGTGTCCACGGG
---------+---------+---------+---------+---------+---------+ 95
OVR01_0031_F06.b : GGATTCCTGCAGAGACCTCGGTGGAGGGTCAGAGGCCCGCGCCGAGCCCGTGTCCACGGG
OVR01_0011_G02.b : ncaacaattgaacatxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20060611C-007581 : GGTCGCTCCTCCTCCGCTGGAGGGACTGACTTACAATTTGGGTCCAGAGCGCACAGCGCG
---------+---------+---------+---------+---------+---------+ 155
OVR01_0031_F06.b : GGTCGCTCCTCCTCCGCTGGAGGGACTGACTTACAATTTGGGTCCAGAGCGCACAGCGCG
OVR01_0011_G02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCACAGCGCG
20060611C-007581 : GGGCTACGAGGGTGCGCAGTTCCCCGGGTCCCCCGAGTCCCCGACGCCCGGCGAGGAGAT
---------+---------+---------+---------+---------+---------+ 215
OVR01_0031_F06.b : GGGCTACGAGGGTGCGCAGTTCCCCGGGTCCCCCGAGTCCCCGACGCCCGGCGAGGAGAT
OVR01_0011_G02.b : GGGCTACGAGGGTGCGCAGTTCCCCGGGTCCCCCGAGTCCCCGACGCCCGGCGAGGAGAT
20060611C-007581 : CTGGGTTTTCCAGCGCGCCCCGCAAGACGCCTCTGCTCAGGAGCCCGGCGCCGGGGCCCC
---------+---------+---------+---------+---------+---------+ 275
OVR01_0031_F06.b : CTGGGTTTTCCAGCGCGCCCCGCAAGACGCCTCTGCTCAGGAgcccggcgccggggcccc
OVR01_0011_G02.b : CTGGGTTTTCCAGCGCGCCCCGCAAGACGCCTCTGCTCAGGAgcccggcgccggggcccc
20060611C-007581 : GCGATGGCCGCGGGCCGCAGCCTCAGGGAGCTGCTGCCGCGTGGGTGCCGGGGCGCCCCT
---------+---------+---------+---------+---------+---------+ 335
OVR01_0031_F06.b : gcgatggccgcgggccgcAGCCTCAGGGAGCTGCTGCCGCGTGGGTGCCGGGGCGCCCCT
OVR01_0011_G02.b : gcgatggccgcgggccgcAGCCTCAGGGAGCTGCTGCCGCGTGGGTGCCGGGGCGCCCCT
20060611C-007581 : CCCTAGCGGGGCGCAGCCTGCGCCCGGTCCCCGCCCGACCAGCGGAATGGGGGGCGGAGG
---------+---------+---------+---------+---------+---------+ 395
OVR01_0031_F06.b : CCCTAGCGGGGCGCAGCCTGCGCCCGGTCCCCGCCCGACCAGCGGAATGGGGGGCGGAGG
OVR01_0011_G02.b : CCCTAGCGGGGCGCAGCCTGCGCCCGGTCCCCGCCCGACCAGCGGAATGGGGGGCGGAGG
20060611C-007581 : GTCTGCCCTGAGGGTCTGCGCGGACCACCGCGGGGGCATCAACTGGCTCAGCCTGAGCCC
---------+---------+---------+---------+---------+---------+ 455
OVR01_0031_F06.b : GTCTGCCCTGAGGGTCTGCGCGGACCACCGCGGGGGCATCAACTGGCTCAGCCTGAGCCC
OVR01_0011_G02.b : GTCTGCCCTGAGGGTCTGCGCGGACCACCGCGGGGGCATCAACTGGCTCAGCCTGAGCCC
20060611C-007581 : CGACGGGCAGCGCCTGCTGACGGGCAGCGAGGACGGCACCGCCCGGCTCTGGAGCACCGC
---------+---------+---------+---------+---------+---------+ 515
OVR01_0031_F06.b : CGACGGGCAGCGCCTGCTGACGGGCAGCGAGGACGGCACCGCCCGGCTCTGGAGCACCGC
OVR01_0011_G02.b : CGACGGGCAGCGCCTGCTGACGGGCAGCGAGGACGGCACCGCCCGGCTCTGGAGCACCGC
20060611C-007581 : GGACGGCCAGTGCTGCGCCCTCCTGCAAGGACATGAAAGCTACGTGACCTTCTGCCAGCT
---------+---------+---------+---------+---------+---------+ 575
OVR01_0031_F06.b : GGACGGCCAGTGCTGCGCCCTCCTGCAAGGACATGAAAGCTACGTGACCTTCTGCCAGCT
OVR01_0011_G02.b : GGACGGCCAGTGCTGCGCCCTCCTGCAAGGACATGAAAGCTACGTGACCTTCTGCCAGCT
20060611C-007581 : GGAGGACGAAGCTGCCTTCACGTGCAGCGCTGACTGCACCATCCGGAAGTGGGACGTGCT
---------+---------+---------+---------+---------+---------+ 635
OVR01_0031_F06.b : GGAGGACGAAGCTGCCTTCACGTGCAGCGCTGACTGCACCATCCGGAAGTGGGACGTGCT
OVR01_0011_G02.b : GGAGGACGAAGCTGCCTTCACGTGCAGCGCTGACTGCACCATCCGGAAGTGGGACGTGCT
20060611C-007581 : GACCGGGCAGTGTCTGCAGGTGTTCCGGGGACACACATCCATTGTGAACAGGATCCTGGT
---------+---------+---------+---------+---------+---------+ 695
OVR01_0031_F06.b : GACCGGGCAGTGTCTGCAGGTGTTCCGGGGACACACATCCATTGTGAACAGGATCCTGGT
OVR01_0011_G02.b : GACCGGGCAGTGTCTGCAGGTGTTCCGGGGACACACATCCATTGTGAACAGGATCCTGGT
20060611C-007581 : CACCAACAACCAGCTCTTCAGCAGTTCCTATGACCGGACAGCTCGCGCCTGGAGTGTAGA
---------+---------+---------+---------+---------+---------+ 755
OVR01_0031_F06.b : CACCAACAACCAGCTCTTCAGCAGTTCCTATGACCGGACAGCTCGCGCCTGGAGTGTAGA
OVR01_0011_G02.b : CACCAACAACCAGCTCTTCAGCAGTTCCTATGACCGGACAGCTCGCGCCTGGAGTGTAGA
20060611C-007581 : CAAAGGGCAGGTGTCGCGGGAGTTCCGGGGCCACCGCAACTGTGTGCTGACTCTAGCCTA
---------+---------+---------+---------+---------+---------+ 815
OVR01_0031_F06.b : CAAAGGGCAGGTGTCGCGGGAGTTCCGGGGCCACCGCAACTGTGTGCTGACTCTAGCCTA
OVR01_0011_G02.b : CAAAGGGCAGGTGTCGCGGGAGTTCCGGGGCCACCGCAACTGTGTGCTGACTCTAGCCTA
20060611C-007581 : CTCTGCCCCCTG*GGACCTGCCTGGGGCTCCCTGCGTGGAGGAGGCC*GTGGCTGGGGGG
---------+---------+---------+---------+---------+---------+ 873
OVR01_0031_F06.b : CTCTGCCCCCTGGGGACCTGCCTGGGGGTCCCTGCGTGGAAGAGGCCCGGGGCTGGGGGG
OVR01_0011_G02.b : CTCTGCCCCCTG*GGACCTGCCTGGGGCTCCCTGCGTGGAGGAGGCC*GTGGCTGGGGGG
20060611C-007581 : CTTCTGGTGACGGGAAGCACAGACGGCACAGCCAAGGTGTGGCAAGTGGCCAGTGGCTGC
---------+---------+---------+---------+---------+---------+ 933
OVR01_0031_F06.b : Ctttctggtgacgggaagcacagacgggacaaccaaggggggggcaggtgggcagtgggc
OVR01_0011_G02.b : CTTCTGGTGACGGGAAGCACAGACGGCACAGCCAAGGTGTGGCAAGTGGCCAGTGGCTGC
20060611C-007581 : TGCCACCAGACGCTGCGGGGCCACACGGGCGCCGTGCTCTGCCTGGTGTTGGACACACCT
---------+---------+---------+---------+---------+---------+ 993
OVR01_0031_F06.b : tggtgccaccaaacgctgcgggggccacccgggcgcccgggttttgcctgggggttggac
OVR01_0011_G02.b : TGCCACCAGACGCTGCGGGGCCACACGGGCGCCGTGCTCTGCCTGGTGTTGGACACACCT
20060611C-007581 : GGGCACACAGCCTTCACCGGCAGCACCGACGCCACCATCCGCGCCTGGG...........
---------+---------+---------+---------+---------+---------+ 1042
OVR01_0031_F06.b : aaaccttgggcccccaagccctttcccggggagaaccgaaagcccccctttcccccgccc
OVR01_0011_G02.b : GGGCACACAGCCTTCACCGGCAGCACCGACGCCACCATCCGCGCCTGGGacttcttgagt
20060611C-007581 : ............................................................
---------+---------+---------+---------+---------+---------+ 1042
OVR01_0031_F06.b : tgggaacattcctgagaggggggaaccccttgggccggggttttcgggggagccccccag
OVR01_0011_G02.b : ggggaggcgctgcgcgtgttccgggagcacaggggctcatcatctgtcctggagctggtg
20060611C-007581 : ............................................................
---------+---------+---------+---------+---------+---------+ 1042
OVR01_0031_F06.b : gggcttctccctttattttttttttttgggaaagttgggttggagaaaccccgggggacc
OVR01_0011_G02.b : aaccggcacgtgtactcgggcaacggcgacagggacggttcaagtgctgggttggcggga
20060611C-007581 : ............................................................
---------+---------+---------+---------+---------+---------+ 1042
OVR01_0031_F06.b : cggtggggtatttcttctcgggggcggccaaggcccccccccccaaaaaaga
OVR01_0011_G02.b : ccggggcgaggggcgtggcgccacgtttcccccgccccccaaaaccccggggtgaagccc
20060611C-007581 : ............................................................
---------+---------+---------+---------+---------+---------+ 1042
OVR01_0031_F06.b :
OVR01_0011_G02.b : ccccttaaagataccccccgcccggggggccc