[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20060611C-008114
Length:
1,053
Sequence:
[FASTA format sequence]
ATTTCTCGGG GGAATGAGCG ACGGTGGACA CAGGCCTTTA GCGACGCCGT CCGTAGGCTG
CCTGGCTTGG TGGTGCTGGA CGCGGAGACA GTGGACTCGG TCAACTCTCC TTCCGGTCCC
GGGTGCAAAA AGCCGAGGCG CCCAGTCTCC TTTAATTGCG GTGGGCGGGG CGGGGCGAAG
CGACCCGCGT TGCTATTGGC GGCGGTTGGG GGCGCGGAAA CTGAACGCGC CTCAACGGCA
GCCGCTGCTT CCTCCGGCGC CTTGGGCGCT CCCAGCCCCG CCATGGCATC GCCCTACCCG
GAGGACCCCT CGCTGGAGAG GCATTTTAAG GGTCACCGAG ATGCAGTTAC CTGTGTGGAC
TTCAGTTTCA ACATGAAGCA GCTGGCCAGC GGCTCCATGG ACTCCTGCCT CATGGTGTGG
CACATGAAGC CCCAGTCACG TGCCTACCGC TTCACCGGCC ACAAGGATGC GGTCACCTGT
GTGAACTTCT CCCCTTCGGG ACACCTGCTT GCCTCGGGCT CTCGCGACAA GACCGTTCGC
ATCTGGGTAC CCAATATCAA AGGCGAGTCA ACTGTGTTTC GTGCACACAC GGCCACGGTG
AGGAGCGTCC ATTTCTGCAG CGATGGCCAG TCCTTTGTGA CGGCCTCTGA CGACAAGACA
ATCAAGGTGT GGTCAACCCA TCGCCAAAAA TTCCTATTCT CCCTGAGCCA GCACATCAAC
TGGGTCCGCT GTGCCAAGTT CTCCCCGGAT GGCCGGCTCA TTGTGTCTGC CAGTGACGAC
AAGACTGTCA AGCTGTGGGA CAAGACCAGC CGGGAGTGTG TCCACTCGTA CTGTGAGCAT
GGCGGCTTTG TCACCTACGT GGACTTCCAC CCCAGCGGCA CATGTGTCGC TGCTGCCGGC
ATGGACAACA CGGTGAAAGT GTGGGACGTG CGGACTCACC GGCTCTTGCA GCATTATCAA
TTGCACAGCG CAGCGGTGAA CGCCCTCTCC TTTCCCCCGT CGGGAAACTA CCTGGGCACA
GCCTCCAGCG ACTCCACCCT GAAGATCCTG GAC
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | WDR51A | WD repeat domain 51A | 508 | e-144 | O |
|
| WDR51B | WD repeat domain 51B | 351 | 7e-97 | O |
|
| WDR69 | WD repeat domain 69 | 139 | 3e-33 | |
|
| WDR5B | WD repeat domain 5B | 135 | 8e-32 | O |
|
| WDR5 | WD repeat domain 5 | 132 | 4e-31 | O |
|
| WDR5 | WD repeat domain 5 | 132 | 4e-31 | O |
|
| PAFAH1B1 | platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa | 132 | 4e-31 | |
|
| KATNB1 | katanin p80 (WD repeat containing) subunit B 1 | 125 | 8e-29 | O |
|
| GNB2L1 | guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 | 115 | 8e-26 | O |
|
| WDR57 | WD repeat domain 57 (U5 snRNP specific) | 115 | 8e-26 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20060611C-008114 : ..................ATTTCTCGGGGGAATGAGCGACGGTGGACACAGGCCTTTAGC
---------+---------+---------+---------+---------+---------+ 42
TES01_0021_B08.b : nncccgctgtggctctggATTTCTCGGGGGAATGAGCGACGGTGGACACAGGCCTTTAGC
TES01_0032_E01.b :
THY01_0010_H02.b :
OVR01_0053_F09.b :
20060611C-008114 : GACGCCGTCCGTAGGCTGCCTGGCTTGGTGGTGCTGGACGCGGAGACAGTGGACTCGGTC
---------+---------+---------+---------+---------+---------+ 102
TES01_0021_B08.b : GACGCCGTCCGTAGGCTGCCTGGCTTGGTGGTGCTGGACGCGGAGACAGTGGACTCGGTC
TES01_0032_E01.b :
THY01_0010_H02.b :
OVR01_0053_F09.b :
20060611C-008114 : AACTCTCCTTCCGGTCCCGGGTGCAAAAAGCCGAGGCGCCCAGTCTCCTTTAATTGCGGT
---------+---------+---------+---------+---------+---------+ 162
TES01_0021_B08.b : AACTCTCCTTCCGGTCCCGGGTGCAAAAAGCCGAGGCGCCCAGTCTCCTTTAATTGCGGT
TES01_0032_E01.b :
THY01_0010_H02.b : ggcaxxxxxxxxx
OVR01_0053_F09.b :
20060611C-008114 : GGGCGGGGCGGGGCGAAGCGACCCGCGTTGCTATTGGCGGCGGTTGGGGGCGCGGAAACT
---------+---------+---------+---------+---------+---------+ 222
TES01_0021_B08.b : GGGCGGGGCGGGGCGAAGCGACCCGCGTTGCTATTGGCGGCGGTTGGGGGCGCGGAAACT
TES01_0032_E01.b :
THY01_0010_H02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0053_F09.b : tttttcgattggactaanacxxxxxxxxxxx
20060611C-008114 : GAACGCGCCTCAACGGCAGCCGCTGCTTCCTCCGGCGCCTTGGGCGCTCCCAGCCCCGCC
---------+---------+---------+---------+---------+---------+ 282
TES01_0021_B08.b : GAACGCGCCTCAACGGCAGCCGCTGCTTCCTCCGGCGCCTTGGGCGCTCCCAGCCCCGCC
TES01_0032_E01.b : gttggctctggGCTGCTTC*TCCGGCGCCTTGGGCGCTCCCAGCCCCGCC
THY01_0010_H02.b : xxxxxxxxxxxxxcggcagccGCTGCTTCCTCCGGCGCCTTGGGCGCTCCCAGCCCCGCC
OVR01_0053_F09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCCCCGCC
20060611C-008114 : ATGGCATCGCCCTACCCGGAGGACCCCTCGCTGGAGAGGCATTTTAAGGGTCACCGAGAT
---------+---------+---------+---------+---------+---------+ 342
TES01_0021_B08.b : ATGGCATCGCCCTACCCGGAGGACCCCTCGCTGGAGAGGCATTTTAAGGGTCACCGAGAT
TES01_0032_E01.b : ATGGCATCGCCCTACCCGGAGGACCCCTCGCTGGAGAGGCATTTTAAGGGTCACCGAGAT
THY01_0010_H02.b : ATGGCATCGCCCTACCCGGAGGACCCCTCGCTGGAGAGGCATTTTAAGGGTCACCGAGAT
OVR01_0053_F09.b : ATGGCATCGCCCTACCCGGAGGACCCCTCGCTGGAGAGGCATTTTAAGGGTCACCGAGAT
20060611C-008114 : GCAGTTACCTGTGTGGACTTCAGTTTCAACATGAAGCAGCTGGCCAGCGGCTCCATGGAC
---------+---------+---------+---------+---------+---------+ 402
TES01_0021_B08.b : GCAGTTACCTGTGTGGACTTCAGTTTCAACATGAAGCAGCTGGCCAGCGGCTCCATGGAC
TES01_0032_E01.b : GCAGTTACCTGTGTGGACTTCAGTTTCAACATGAAGCAGCTGGCCAGCGGCTCCATGGAC
THY01_0010_H02.b : GCAGTTACCTGTGTGGACTTCAGTTTCAACATGAAGCAGCTGGCCAGCGGCTCCATGGAC
OVR01_0053_F09.b : GCAGTTACCTGTGTGGACTTCAGTTTCAACATGAAGCAGCTGGCCAGCGGCTCCATGGAC
20060611C-008114 : TCCTGCCTCATGGTGTGGCACATGAAGCCCCAGTCACGTGCCTACCGCTTCACCGGCCAC
---------+---------+---------+---------+---------+---------+ 462
TES01_0021_B08.b : TCCTGCCTCATGGTGTGGCACATGAAGCCCCAGTCACGTGCCTACCGCTTCACCGGCCAC
TES01_0032_E01.b : TCCTGCCTCATGGTGTGGCACATGAAGCCCCAGTCACGTGCCTACCGCTTCACCGGCCAC
THY01_0010_H02.b : TCCTGCCTCATGGTGTGGCACATGAAGCCCCAGTCACGTGCCTACCGCTTCACCGGCCAC
OVR01_0053_F09.b : TCCTGCCTCATGGTGTGGCACATGAAGCCCCAGTCACGTGCCTACCGCTTCACCGGCCAC
20060611C-008114 : AAGGATGCGGTCACCTGTGTGAACTTCTCCCCTTCGGGACACCTGCTTGCCTCGGGCTCT
---------+---------+---------+---------+---------+---------+ 522
TES01_0021_B08.b : AAGGATGCGGTCACCTGTGTGAACTTCTCCCCTTCGGGACACCTGCTTGCCTCGGGCTCT
TES01_0032_E01.b : AAGGATGCGGTCACCTGTGTGAACTTCTCCCCTTCGGGACACCTGCTTGCCTCGGGCTCT
THY01_0010_H02.b : AAGGATGCGGTCACCTGTGTGAACTTCTCCCCTTCGGGACACCTGCTTGCCTCGGGCTCT
OVR01_0053_F09.b : AAGGATGCGGTCACCTGTGTGAACTTCTCCCCTTCGGGACACCTGCTTGCCTCGGGCTCT
20060611C-008114 : CGCGACAAGACCGTTCGCATCTGGGTACCCAATATCAAAGGCGAGTCAACTGTGTTTCGT
---------+---------+---------+---------+---------+---------+ 582
TES01_0021_B08.b : CGCGACAAGACCGTTCGCATCTGGGTACCCAATATCAAAGGCGAGTCAACTGTGTTTCGT
TES01_0032_E01.b : CGCGACAAGACCGTTCGCATCTGGGTACCCAATATCAAAGGCGAGTCAACTGTGTTTCGT
THY01_0010_H02.b : CGCGACAAGACCGTTCGCATCTGGGTACCCAATATCAAAGGCGAGTCAACTGTGTTTCGT
OVR01_0053_F09.b : CGCGACAAGACCGTTCGCATCTGGGTACCCAATATCAAAGGCGAGTCAACTGTGTTCCGT
20060611C-008114 : GCACACACGGCCACGGTGAGGAGCGTCCATTTCTGCAGCGATGGCCAGTCCTTTGTGACG
---------+---------+---------+---------+---------+---------+ 642
TES01_0021_B08.b : GCACACACGGCCACGGTGAGGAGCGTCCATTTCTGCAGCGATGGCCAGTCCTTTGTGACG
TES01_0032_E01.b : GCACACACGGCCACGGTGAGGAGCGTCCATTTCTGCAGCGATGGCCAGTCCTTTGTGACG
THY01_0010_H02.b : GCACACACGGCCACGGTGAGGAGCGTCCATTTCTGCAGCGATGGCCAGTCCTTTGTGACG
OVR01_0053_F09.b : GCACACACGGCCACGGTGAGGAGCGTCCATTTCTGCAGCGATGGCCAGTCCTTTGTGACG
20060611C-008114 : GCCTCTGACGACAAGACAATCAAGGTGTGGTCAACCCATCGCCAAAAATTCCTATTCTCC
---------+---------+---------+---------+---------+---------+ 702
TES01_0021_B08.b : GCCTCTGACGACAAGACAATCAAGGTGTGGTCAACCCATCGCCAAAAATTCCTATTCTCC
TES01_0032_E01.b : GCCTCTGACGACAAGACAATCAAGGTGTGGTCAACCCATCGCCAAAAATTCCTATTCTCC
THY01_0010_H02.b : GCCTCTGACGACAAGACAATCAAGGTGTGGTCAACCCATCGCCAAAAATTCCTATTCTCC
OVR01_0053_F09.b : GCCTCTGACGACAAGACAATCAAGGTGTGGTCAACCCATCGCCAAAAATTCCTATTCTCC
20060611C-008114 : CTGAGCCAGCACATCAACTGGGTCCGCTGTGCCAAGTTCTCCCCGGATGGCCGGCTCATT
---------+---------+---------+---------+---------+---------+ 762
TES01_0021_B08.b : CTGAGCCAGCACATCAACTGGGTCCGCTGTGCCGAGTTCTCCCCGGATGGCCGGCTCATT
TES01_0032_E01.b : CTGAGCCAGCACATCAACTGGGTCCGCTGTGCCAAGTTCTCCCCGGATGGCCGGCTCATT
THY01_0010_H02.b : CTGAGCCAGCACATCAACTGGGTCCGCTGTGCCAAGTTCTCCCCGGATGGCCGGCTCATT
OVR01_0053_F09.b : CTGAGCCAGCACATCAACTGGGTCCGCTGTGCCAAGTTCTCCCCGGATGGCCGGCTCATT
20060611C-008114 : GTGTCTGCCAGTGACGACAAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAGTGTGTC
---------+---------+---------+---------+---------+---------+ 822
TES01_0021_B08.b : GTGTCTGCCAGTGACGACCAAACTGTCAAGCTGTGGGACCAGACCAGCCCGGAGTGTGTC
TES01_0032_E01.b : GTGTCTGCCAGTGACGACAAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAGTGTGTC
THY01_0010_H02.b : GTGTCTGCCAGTGACGACCAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAGTGTGTC
OVR01_0053_F09.b : GTGTCTGCCAGTGACGACAAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAGTGTGTC
20060611C-008114 : CACTCGTACTGTGAGCATGGCGGCTTTGTCACCTACGTGGACTTCCACCCCAGCGGCAC*
---------+---------+---------+---------+---------+---------+ 881
TES01_0021_B08.b : CACTCGTACTGTGAGCATGGCGGGCTTGTCACCTACGTGGACTTTCCCCCCAGCGGCAC*
TES01_0032_E01.b : CACTCGTACTGTGAGCATGGCGGCTTTGTCACCTACTTGGACTTCCACCCCATCGGCACA
THY01_0010_H02.b : CACTCGTACTGTGAGCATGGCGGCTTTGTCACCTACGTGGACTTCCACCCCAGCGGCAC*
OVR01_0053_F09.b : CACTCGTACTGTGAGCATGGCGGCTTTGTCACCTACGTGGACTTCCACCCCAGCGGCAC*
20060611C-008114 : ATGTGTCGCTGCTGCCGGCATGGACAACACGGTGAAAG*TGTGGGACGTGCGGACTCACC
---------+---------+---------+---------+---------+---------+ 940
TES01_0021_B08.b : Atgtgttcctgctgcccgcatggacaaaccggtgaagtgtgggaaatgcggatccccggc
TES01_0032_E01.b : ATGTGTCGCTGCTGCCGGCATGGACAACACGGTGAAtgtgtgggacgtgcggactctccg
THY01_0010_H02.b : ATGTGTCGCTGCTGCCGGCATGGACAACACGGTGAAGGGCGTGGGACGTGCGGACTCACC
OVR01_0053_F09.b : ATGTGTCGCTGCTGCCGGCATGGACAACACGGTGAAAG*TGTGGGACGTGCGGACTCACC
20060611C-008114 : GGCTCTTGCAGCATTATCAATTGCACAGCGCAGCGGTGAACGCCCTCTCCTTTCCCCCGT
---------+---------+---------+---------+---------+---------+ 1000
TES01_0021_B08.b : tcttgcaactttatcatttcacaacgcaacggtgaaagccctttccttccacccgtggga
TES01_0032_E01.b : gctcttgcagcatttaatcattgcacatcgcatcgggtaatctcctttcccttctacccg
THY01_0010_H02.b : GGCTCTTGCAGCATTATCAATTGCACAGCGCACCGGTGAACGTCCTCTCCTTTCCCCCGT
OVR01_0053_F09.b : GGCTCTTGCAGCATTATCAATTGCACAGCGCAGCGGTGAACGCCCTCTCCTCCCACCCGT
20060611C-008114 : CGGGAAACTACCTGGGCACAGCCTCCAGCGACTCCACCCTGAAGATCCTGGAC.......
---------+---------+---------+---------+---------+---------+ 1053
TES01_0021_B08.b : aattacttggtaaagcctccagcgaatccccctgaaaaactggacctctggagggccggt
TES01_0032_E01.b : tttgggaatttaacttggtcacagccttccatcgactccaccctgtaaaatcctggaact
THY01_0010_H02.b : CGGGAAAC*ACCTGGGCACAGTCTTCCGCGAATCCACCTTGAGGATCCTGGACctctcga
OVR01_0053_F09.b : CGGGAAACTACCTGGTCACAGCCTCCAGCGACTCCACCCTGAAGATCCTGGACctcatgg
20060611C-008114 : ............................................................
---------+---------+---------+---------+---------+---------+ 1053
TES01_0021_B08.b : tgttcttaaccctccaggggattagggtccagccccaacggtgccttttcaaaacggggg
TES01_0032_E01.b : tcttggatgggcctgctgctttaaactctcccacgggcttcataggttccatccaccacc
THY01_0010_H02.b : agggccgcctgcn
OVR01_0053_F09.b : aagggccggctgctatacacgctccacgggcatcaagggtcacccaccacgtttgccttt
20060611C-008114 : ............................................................
---------+---------+---------+---------+---------+---------+ 1053
TES01_0021_B08.b : ataattttgcttcgggaggtttgattaaaaatgaaggtttgaaaaagaactttaaggctc
TES01_0032_E01.b : ttttgccttttttctaaaacgggggaataatttggcctctgggaggtctttaatgaaata
THY01_0010_H02.b :
OVR01_0053_F09.b : tcaaaaacgggggaaatattttgcttctgggaggttctgatgaaccaattgaatggtttg
20060611C-008114 : ............................................................
---------+---------+---------+---------+---------+---------+ 1053
TES01_0021_B08.b : caatttgggggaatccctaaaagggaaaggcccccccccgccgggccaccctctcggaac
TES01_0032_E01.b : tctaatgtttttgaaaaaataaacttttaatgtttatccattatttgaaaaattcttcaa
THY01_0010_H02.b :
OVR01_0053_F09.b : gaaaaaataactttgaatgttctccgattaa
20060611C-008114 : ............................................................
---------+---------+---------+---------+---------+---------+ 1053
TES01_0021_B08.b : ttcccaaagagg
TES01_0032_E01.b : agaatgataagatcctcctatctcttgacaggctcaatttcctctcagtaattattctca
THY01_0010_H02.b :
OVR01_0053_F09.b :
20060611C-008114 : ............................................................
---------+---------+---------+---------+---------+---------+ 1053
TES01_0021_B08.b :
TES01_0032_E01.b : taaggtgtattttctccttccctcttaatcttgtggtcatgaatatcgttaattattcta
THY01_0010_H02.b :
OVR01_0053_F09.b :
20060611C-008114 : ............................................................
---------+---------+---------+---------+---------+---------+ 1053
TES01_0021_B08.b :
TES01_0032_E01.b : aaatccttccccactttcaccattatataattctttataaactcttaaacaaatctgtgt
THY01_0010_H02.b :
OVR01_0053_F09.b :
20060611C-008114 : ............................................................
---------+---------+---------+---------+---------+---------+ 1053
TES01_0021_B08.b :
TES01_0032_E01.b : aacatacttggatccatatgatatatcccctctcactattatacctcatcttgtacatat
THY01_0010_H02.b :
OVR01_0053_F09.b :
20060611C-008114 : ............................................................
---------+---------+---------+---------+---------+---------+ 1053
TES01_0021_B08.b :
TES01_0032_E01.b : ctttattttccacataagtaaatatttataattgtcttgttaatacacttcttactttgt
THY01_0010_H02.b :
OVR01_0053_F09.b :
20060611C-008114 : ............................................................
---------+---------+---------+---------+---------+---------+ 1053
TES01_0021_B08.b :
TES01_0032_E01.b : atctttatcaccacttttacggagtaataatattaatacctcttatttctgtgtgactta
THY01_0010_H02.b :
OVR01_0053_F09.b :
20060611C-008114 : ............................................................
---------+---------+---------+---------+---------+---------+ 1053
TES01_0021_B08.b :
TES01_0032_E01.b : ctccttatacttattcttttcatgctgatac
THY01_0010_H02.b :
OVR01_0053_F09.b :
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