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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20060611C-009837

Length: 827

Sequence [FASTA format sequence]
CCACACCCTC TGTTATTAAA AACTCTGGGA ACAGAGAAAA GATTCTCCTC TTCGAATGAC
TGAAACACAG CAAGATGTGG AGCTTCAGTT TCCTTCTCTT TTGGGGGTGT TGTGGTTTCT
ACAGCTGGGT AATATTCACG TTATCTCCGT TGGAGTCAAT GGCACAGTCT GGGAATGAGT
GTACAGATAC CACCATGTGT CCGGCATATG CAACCTGCAC CAACACTTCA GACAGTTACT
ACTGCAGTTG CAAAAGAGGC TTTCTGTCCA CCAACGGACA GATGCAGTTC AAAGATCCAA
CGGTGGAATG CCTAGATATA GATGAGTGTT CTCAAAGCCC CCCAGTATGT GGTCCACACT
CAATCTGCAA GAACCTGCCA GGGAGGTACA GGTGCAGCTG TTTGACTGGT TTCTCATCTC
CCACTGGAAA CAACTGGATC TTGGGAAAGA AAGGTCGTTT CATCTGTACA GATGTAAATG
AATGTGCCAA TCCCAAAACT TGCCCAGAGC ACGCGATTTG CCGAAACAGT GTGGGGAGCT
ACTCTTGTGT CTGCAAGCCC GGATTTGAAT CCAGCAGGGG AAAGACGAGT GTCCAGGGCC
CGGGACAGAT GTGTAGAGAT GTGGATGAGT GTTCCAGCAA CTCAACTCTT TGTGGTCCTA
GTTCTGTCTG TACCAACCTC CCAGGAAAAT ACAGTTGCTC CTGCCTGCCT GGGTTCTTTT
CACCTGGTGT TTGGAGTCCT GAGAAACCTG GAGCTTTCAA ATGTACAGGG GTTCCCTTCA
AATGTAAAGA AGACGTGATG CCCAACAATG AGTGGGTCCA GCTATGC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinEMR1egf-like module containing, mucin-like, hormone receptor-like 13062e-83O
Contig/Assembly ProteinEMR2egf-like module containing, mucin-like, hormone receptor-like 21454e-35
Contig/Assembly ProteinEMR2egf-like module containing, mucin-like, hormone receptor-like 21454e-35
Contig/Assembly ProteinCD97CD97 molecule1423e-34
Contig/Assembly ProteinLTBP4latent transforming growth factor beta binding protein 41254e-29
Contig/Assembly ProteinFBN1fibrillin 11254e-29
Contig/Assembly ProteinNELL1NEL-like 1 (chicken)1223e-28
Contig/Assembly ProteinFBN3fibrillin 31187e-27
Contig/Assembly ProteinCD97CD97 molecule1185e-27O
Contig/Assembly ProteinFBLN5fibulin 51187e-27


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Members: 2      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
AMP010026F05AMP01_0026_F05.bBW956964 
DCI010100C11DCI01_0100_C11.bDB798440 AK391528

  

Alignment:      TOP

20060611C-009837 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
DCI01_0100_C11.b : nnnnnnccgatacaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0026_F05.b : tttaaagaatctaax
20060611C-009837 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
DCI01_0100_C11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0026_F05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20060611C-009837 : .........................................CCACACCCTCTGTTATTAA
---------+---------+---------+---------+---------+---------+ 19
DCI01_0100_C11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCACACCCTCTGTTATTAA
AMP01_0026_F05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20060611C-009837 : AAACTCTGGGAACAGAGAAAAGATTCTCCTCTTCGAATGACTGAAACACAGCAAGATGTG
---------+---------+---------+---------+---------+---------+ 79
DCI01_0100_C11.b : AAACTCTGGGAACAGAGAAAAGATTCTCCTCTTCGAATGACTGAAACACAGCAAGATGTG
AMP01_0026_F05.b : xxxxxxxxxxxxxxxxxxxxxxxxxCTCCTCTTCGAATGACAGAAACACAGCAAGATGTG
20060611C-009837 : GAGCTTCAGTTTCCTTCTCTTTTGGGGGTGTTGTGGTTTCTACAGCTGGGTAATATTCAC
---------+---------+---------+---------+---------+---------+ 139
DCI01_0100_C11.b : GAGCTTCAGTTTCCTTCTCTTTTGGGGGTGTTGTGGTTTCTACAGCTGGGTAATATTCAC
AMP01_0026_F05.b : GAGCTTCAGTTTCCTTCTCTTTTGGGGGTGTTGTGGTTTCTACAGCTGGGTAATATTCAC
20060611C-009837 : GTTATCTCCGTTGGAGTCAATGGCACAGTCTGGGAATGAGTGTACAGATACCACCATGTG
---------+---------+---------+---------+---------+---------+ 199
DCI01_0100_C11.b : GTTATCTCCGTTGGAGTCAATGGCACAGTCTGGGAATGAGTGTACAGATACCACCATGTG
AMP01_0026_F05.b : GTTATCTCCGTTGGAGTCAATGGCACAGTCTGGGAATGAGTGTACAGATACCACCATGTG
20060611C-009837 : TCCGGCATATGCAACCTGCACCAACACTTCAGACAGTTACTACTGCAGTTGCAAAAGAGG
---------+---------+---------+---------+---------+---------+ 259
DCI01_0100_C11.b : TCCGGCATATGCAACCTGCACCAACACTTCAGACAGTTACTACTGCAGTTGCAAAAGAGG
AMP01_0026_F05.b : TCCGGCATATGCAACCTGCACCAACACTTCAGACAGTTACTACTGCAGTTGCAAAAGAGG
20060611C-009837 : CTTTCTGTCCACCAACGGACAGATGCAGTTCAAAGATCCAACGGTGGAATGCCTAGATAT
---------+---------+---------+---------+---------+---------+ 319
DCI01_0100_C11.b : CTTTCTGTCCACCAACGGACAGATGCAGTTCAAAGATCCAACGGTGGAATGCCTAGATAT
AMP01_0026_F05.b : CTTTCTGTCCACCAACGGACAGATGCAGTTCAAAGATCCAACGGTGGAATGCCTAGATAT
20060611C-009837 : AGATGAGTGTTCTCAAAGCCCCCCAGTATGTGGTCCACACTCAATCTGCAAGAACCTGCC
---------+---------+---------+---------+---------+---------+ 379
DCI01_0100_C11.b : AGATGAGTGTTCTCAAAGCCCCCCAGTATGTGGTCCACACTCAATCTGCAAGAACCTGCC
AMP01_0026_F05.b : AGATGAGTGTTCTCAAAGCCCCCCAGTATGTGGTCCTCACTCAATCTGCAAGAACCTGCC
20060611C-009837 : AGGGAGGTACAGGTGCAGCTGTTTGACTGGTTTCTCATCTCCCACTGGAAACAACTGGAT
---------+---------+---------+---------+---------+---------+ 439
DCI01_0100_C11.b : AGGGAGGTACAGGTGCAGCTGTTTGACTGGTTTCTCATCTCCCACTGGAAACAACTGGAT
AMP01_0026_F05.b : AGGGAGGTACAGGTGCAGCTGTTTGACTGGTTTCTCATCTCCCACTGGAAACAACTGGAT
20060611C-009837 : CTTGGGAAAGAAAGGTCGTTTCATCTGTACAGATGTAAATGAATGTGCCAATCCCAAAAC
---------+---------+---------+---------+---------+---------+ 499
DCI01_0100_C11.b : CTTGGGAAAGAAAGGTCGTTTCATCTGTACAGATGTAAATGAATGTGCCAATCCCAAAAC
AMP01_0026_F05.b : CTTGGGAAAGAAAGGTCGTTTCATCTGTACAGATGTAAATGAATGTGCCAATCCCAAAAC
20060611C-009837 : TTGCCCAGAGCACGCGATTTGCCGAAACAGTGTGGGGAGCTACTCTTGTGTCTGCAAGCC
---------+---------+---------+---------+---------+---------+ 559
DCI01_0100_C11.b : TTGCCCAGAGCACGCGATTTGCCGAAACAGTGTGGGGAGCTACTCTTGTGTCTGCAAGCC
AMP01_0026_F05.b : TTGCCCAGAGCACGCGATTTGCCGAAACAGTGTGGGGAGCTACTCTTGTGTCTGCAAGCC
20060611C-009837 : CGGATTTGAATCCAGCAGGGGAAAGACGAGTGTCCAGGGCCCGGGACAGATGTGTAGAGA
---------+---------+---------+---------+---------+---------+ 619
DCI01_0100_C11.b : CGGATTTGAATCCAGCAGGGGAAAGACGAGTGTCCAGGGCCCGGGACAGATGTGTAGAGA
AMP01_0026_F05.b : CGGATTTGAATCCAGCAGGGGAAAGACGAGTGTCCAGGGCCCGGGACAGATGTGTAGAGA
20060611C-009837 : TGTGGATGAGTGTTCCAGCAACTCAACTCTTTGTGGTCCTAGTTCTGTCTGTACCAACCT
---------+---------+---------+---------+---------+---------+ 679
DCI01_0100_C11.b : TGTGGATGAGTGTTCCAGCAACTCAACTCTTTGTGGTCCTAGTTCTGTCTGTACCAACCT
AMP01_0026_F05.b : TGTGGATGAGTGTTCCAGCAACTCAACTCTTTGTGGTCCTAGTTCTGTCTGTACCAACCT
20060611C-009837 : CCCAGGAAAATACAGTTGCTCCTGCCTGCCTGGGTTCTTTTCACCTGGTGTTTGGAGTCC
---------+---------+---------+---------+---------+---------+ 739
DCI01_0100_C11.b : CCCAGGAAAATACAGTTGCTCCTGCCTGCCTGGGTTCTTTTCACCTGNNTGTTGGAGTCC
AMP01_0026_F05.b : CCCAGGAAAATACAGTTGCTCCTGCCTGCCTGGGTTCTTTTCACCTGGTGTTTGGAGTCC
20060611C-009837 : TGAGAAACCTGGAGCTTTCAAATGTACAGGGGTTCCCTTCAAATGTAAAGAAGACGTGAT
---------+---------+---------+---------+---------+---------+ 799
DCI01_0100_C11.b : TGAGAAACCCTGAGCTTTCAAATGTACAGGGGTTCCCTTCAAATGNTAAGAAGACGTGAT
AMP01_0026_F05.b : TGAGAAACCTGAGGCTTTCA*ATGTACAGGGGTTCCCTTCAAATGTAAAGAAGACGTGAT
20060611C-009837 : GCCCAACAATGAGTGGGTCCAGCTATGC................................
---------+---------+---------+---------+---------+---------+ 827
DCI01_0100_C11.b : GCCCCAACATGAGTGGGTCCAGCTATGCaaagatggagcagcagtgaagcctaaatacgt
AMP01_0026_F05.b : GCCCAACAATGAGTGGGTCCAGCTATGCccaagaggagcagcagtgaagcctaaatacgt
20060611C-009837 : ............................................................
---------+---------+---------+---------+---------+---------+ 827
DCI01_0100_C11.b : tttcttttgtgcagtaatgaatgccaccttcagcgttctggatgatgcctgtaaaaaaac
AMP01_0026_F05.b : tttcttttgtgcagtaatgaatgccactttcacgttctggaggatgcctgtaaaaaacac
20060611C-009837 : ............................................................
---------+---------+---------+---------+---------+---------+ 827
DCI01_0100_C11.b : accgctgttctctgaagaatcggctgaaaaattgcttctgtgatgaaaaacattcccccg
AMP01_0026_F05.b : cgctggttccttaaaaataccgctgaaagattttcctcggtgatgaaaaaacattccacg
20060611C-009837 : ............................................................
---------+---------+---------+---------+---------+---------+ 827
DCI01_0100_C11.b : gtccagtttcccaaaaagaaaaatccaccctggcccaattttaataaaaaggggaaaacc
AMP01_0026_F05.b : gtccagtttccccaaaagaaatattccccctggccaattcttatgaaaaagggaaagccc
20060611C-009837 : ............................................................
---------+---------+---------+---------+---------+---------+ 827
DCI01_0100_C11.b : cccaattggttctttttggaaacctcgcgaatgttccttcaacctttcaagggaatactt
AMP01_0026_F05.b : ctttggctctttctaaaacccccgaagttcttcaacctttaaagaaatttaggggggacc
20060611C-009837 : ............................................................
---------+---------+---------+---------+---------+---------+ 827
DCI01_0100_C11.b : taatttttaaca
AMP01_0026_F05.b : tttttggcaaaaacatttgggacaacttggggtccccggaattccctt