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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-001315

Length: 1,188

Sequence [FASTA format sequence]
NTTGAACAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXTTT
CCCTTGACTT CATCCCCTCT GCTGTGAAAT GAGGTCAGGC CACTCTTAAT CCTATGATTC
TGTGCTCCCT GGTGTTTCTG TTGAGCTGCT GGCTTTGACA TCTGTGAATC TGGAGGACCA
GTTGCTACAT CAATGAGCCA GAGAAAATGG GGAAAGCGGT ATTTACTATC AGAATGCAGA
CAGCAGAAGA ATAGGGCACG GGGGTCACCA CGTACGCAGT GCACCCAGGC ATCGTCCAGT
CTGAGCTGGT CCGGCATTCC TTCCTGCTGT GCCTGCTCTG GCGGCTCTTC TCCCGCTTCC
TCAAAACAGC GCGGGAGGGG GCCCAGACCA GCCTGCACTG CGCCCTGGCC GAGGGCTTGG
AGCCCCTGAG CGGCAAGTAC TTCAGTGACT GCAAGAGGGC CTGGGTGTCG CCAAGGGCCC
GGAATAACAA AACGGCCGAG CGCTTGTGGA ACGTCAGCTG CGAGCTCCTG GGAATCCAGT
GGGAGTAGAG CTGCTGGAAG ATGCGCGGCT GTATCAAGCC TGGTCCAGGC CATAACGCAG
ACCGGGGAGA TGGCCCACCC CGAAGGACTG ACCTGGCTGG CTGCTGTNCC CAACACTTCC
CTGCTTTGAT TCTCCTGATC CTTGNAAACC TNCCCACACC TAACCCTCTT ACCCAGCTGA
TTCTCGGCAT AAGAAGTTCA TACCTGGAGA GCATCGTCCT TGAAGACTTG CAAAGTCNNN
GCACTTCTCG GGGCAAGAAG ACGGGGCCAA ATGCCAGCTG GGCACGGGAT GGCAAAAGAA
CTGGGAAATT GATTCAATTT CTTCACAATA ACAAAAACCC CACCGGCACC TCGGGAAGGG
TCATGTTACA TTTTTCCGGG AATAGAACTC AACCCTGACC AAATCCTTCC TCTTGAAAAA
TATCCGGCAT CTGGAAATGG GAATTTAAAA TGGCCACCCG AAATTTATTT TTGGGGGGCA
AATTGGAAAA ACCCAAAAAA CCTTCCGGAA CCTGAAAACC TCCCGGGGAA GGGGGAATAG
AAATTGAATT TTCCCCGGGG GAATTTAAAA AAATTTTTAT ATACCTTTTG AAATTTTCAC
CCTTTCGGGG AAAAAAATTG GTTCCCAATC CTTTGGCTCC TTAGACCCCA GTCCGGGGGG
GTTTCCTCCT TCCCGGTAAA ATTTCTCCAT TCGGGAAAAA AAACTTTTCT CTCACGTGTT
AGGGGGTTCT TCCCTCTTCC TAAAAAAAAA AATTCCCGGT GTATTATCGT GCTACATTGT
GACAATAAAA TACCCCTATA ATTAT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)1942e-49
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)1357e-32
Contig/Assembly ProteinMGC23280hypothetical protein MGC2328092.85e-19
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)80.13e-15
Contig/Assembly ProteinRDH13retinol dehydrogenase 13 (all-trans/9-cis)69.36e-12
Contig/Assembly ProteinWWOXWW domain containing oxidoreductase69.36e-12
Contig/Assembly ProteinDHRSXdehydrogenase/reductase (SDR family) X-linked59.75e-09


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRdh12retinol dehydrogenase 121733e-43
Contig/Assembly ProteinRdh11retinol dehydrogenase 111281e-29
Contig/Assembly ProteinRdh14retinol dehydrogenase 14 (all-trans and 9-cis)81.32e-15
Contig/Assembly ProteinWwoxWW domain-containing oxidoreductase71.22e-12
Contig/Assembly ProteinRdh13retinol dehydrogenase 13 (all-trans and 9-cis)69.37e-12
Contig/Assembly ProteinDhrsxdehydrogenase/reductase (SDR family) X chromosome51.62e-06


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC490744similar to retinol dehydrogenase 12 (all-trans and 9-cis)1942e-49
Contig/Assembly ProteinLOC480366similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)1296e-30
Contig/Assembly ProteinLOC491173similar to retinol dehydrogenase 11 (predicted)93.24e-19
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)81.61e-15
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)81.61e-15
Contig/Assembly ProteinLOC611373similar to Retinol dehydrogenase 1372.48e-13
Contig/Assembly ProteinLOC475790similar to Retinol dehydrogenase 1265.11e-10
Contig/Assembly ProteinLOC609792similar to dehydrogenase/reductase (SDR family) X-linked52.87e-07


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDSSDR2double substrate-specificity short chain dehydrogenase/reductase 21911e-48
Contig/Assembly ProteinLOC505995similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)1327e-31
Contig/Assembly ProteinLOC505995similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)1327e-31
Contig/Assembly ProteinMGC139505similar to retinol dehydrogenase 11 (predicted)942e-19
Contig/Assembly ProteinMGC139076similar to retinol dehydrogenase 14 (all-trans and 9-cis)80.52e-15
Contig/Assembly ProteinMGC140618similar to retinol dehydrogenase 13 (all-trans and 9-cis)70.92e-12
Contig/Assembly ProteinLOC507942similar to retinol dehydrogenase 11 (predicted)60.13e-09
Contig/Assembly ProteinLOC513482similar to dehydrogenase/reductase (SDR family) X-linked51.61e-06


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
ADR010041B04ADR01_0041_B04.bDB785112