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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-003774

Length: 863

Sequence [FASTA format sequence]
NNTTAGGTAT CCTAAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX
ACATTCTC TTTGCTTGTA
TTGCTGTCCA TCTTGAGCCA CGATACCTCT ACCGACCCTC ATCTAGGCAT CTAACGACAA
AATGACCATA CGTGAGGTCC CAGTCCTACG ATTTGTCAAC ACCATCGTGA ACCTTCATAA
ATCATGGGCT ATCGTAAAGA ATCCCGTGAT CATCCAAGCT GAGTTCTATC TGACCCCCGA
CCAATCTGGC CAGTTTATGT TTGACTTTGA CTGTGATGAG AGTTTCCACG TGGATATGTA
AAAGAGGGAG ACCGTCTGGC GACTTGTATA ATTTGGACAT TTTGCCAGAC TTTGAGGCTC
ATGGTGCACT AGTCCACATA ACTGTGGACA ATGCCCACCT GGACATCGTG ATCAATCGCT
CCAACAGCAC CGTAACACCT ATGTACCTCC AGAAGTGACT GTGCTCTCAG ACAAGCCTGT
TGAACTGAGA GAGCCCGACA TCCTCATCTG TTTCAGCTAC TCAGTTCTCC CCGCCAGTGG
TCAATGTCAC CTGTCTTCTA TATGGCTCCC CTGTCACCAT ATGAGTGTCA TAGACAGTCT
TCCTGCCCCG GGAGGACCAC CTTTTCCACA AGTTCCACTA TCTCCCCTTC ATGCCCTCTA
CCTAGGATGT CTATGACTGC CATGTGGAGC ACTGGTGTTT GGACAAGCCT CTTCTCAAGC
ACTGGGAGAT TGAGTCTCAA ACCCCCCTCC CACAAACTAC AAATAACACG TGTGTGCTCT
GGGACTGAAT TGTGCTCTGG TGCGGATCAT CCTCCGAAAA CGTCTTCTCA ATCAGGGTTT
GCCCCAAAGC TACCCCAAGA AAACCCAGGG CCCCTGTGAG GTGCTTTGCG GGAATGGACT
TGATTAAGAT CATGAAAAAA TTTCTCTTGA AACTTTAAAA ACCCACGAAA CTCCTCTATC
ACCTCCTGAA AAAACCTCAT TAATATTTCA GCCCGAACCC CCCCAATGTT AACCTTTTTA
ACTAAATTTA CATCCGTAAA CCCCGTGTTA CCCTTTTTGC GGGATTCCCC TTTCAACCTT
TTATACCCNC AAGCTTTAAA AATCCCGTTT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DRAmajor histocompatibility complex, class II, DR alpha1555e-38O
Contig/Assembly ProteinHLA-DPA1major histocompatibility complex, class II, DP alpha 11163e-26O
Contig/Assembly ProteinHLA-DOAmajor histocompatibility complex, class II, DO alpha1093e-24O
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)1056e-23O
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)1056e-23O
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)1056e-23O
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)1056e-23O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 11041e-22O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 188.26e-22O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 188.26e-22O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Eahistocompatibility 2, class II antigen E alpha1431e-34O
Contig/Assembly ProteinH2-Oahistocompatibility 2, O region alpha locus1055e-23O
Contig/Assembly ProteinH2-Aahistocompatibility 2, class II antigen A, alpha90.92e-18O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDLA-DRA1MHC class II DR alpha chain1587e-39O
Contig/Assembly Proteindqa1MHC class II DLA DQalpha chain1002e-21O
Contig/Assembly ProteinLOC474869similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)99.83e-21O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBOLA-DRAmajor histocompatibility complex, class II, DR alpha1471e-35O
Contig/Assembly ProteinLOC525727similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)1092e-24O
Contig/Assembly ProteinLOC525727similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)1048e-23O
Contig/Assembly ProteinBOLA-DQA1histocompatibility complex, class II, DQ alpha, type 11041e-22O
Contig/Assembly ProteinBOLA-DQAmajor histocompatibility complex, class II, DQ alpha994e-21O
Contig/Assembly ProteinBOLA-DYAmajor histocompatibility complex, class II, DY alpha96.72e-20O
Contig/Assembly ProteinBOLA-DQA2major histocompatibility complex, class II, DQ alpha 195.16e-20O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
AMP010018B10AMP01_0018_B10.b