[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-003774
Length:
863
Sequence:
[FASTA format sequence]
NNTTAGGTAT CCTAAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXACATTCTC TTTGCTTGTA
TTGCTGTCCA TCTTGAGCCA CGATACCTCT ACCGACCCTC ATCTAGGCAT CTAACGACAA
AATGACCATA CGTGAGGTCC CAGTCCTACG ATTTGTCAAC ACCATCGTGA ACCTTCATAA
ATCATGGGCT ATCGTAAAGA ATCCCGTGAT CATCCAAGCT GAGTTCTATC TGACCCCCGA
CCAATCTGGC CAGTTTATGT TTGACTTTGA CTGTGATGAG AGTTTCCACG TGGATATGTA
AAAGAGGGAG ACCGTCTGGC GACTTGTATA ATTTGGACAT TTTGCCAGAC TTTGAGGCTC
ATGGTGCACT AGTCCACATA ACTGTGGACA ATGCCCACCT GGACATCGTG ATCAATCGCT
CCAACAGCAC CGTAACACCT ATGTACCTCC AGAAGTGACT GTGCTCTCAG ACAAGCCTGT
TGAACTGAGA GAGCCCGACA TCCTCATCTG TTTCAGCTAC TCAGTTCTCC CCGCCAGTGG
TCAATGTCAC CTGTCTTCTA TATGGCTCCC CTGTCACCAT ATGAGTGTCA TAGACAGTCT
TCCTGCCCCG GGAGGACCAC CTTTTCCACA AGTTCCACTA TCTCCCCTTC ATGCCCTCTA
CCTAGGATGT CTATGACTGC CATGTGGAGC ACTGGTGTTT GGACAAGCCT CTTCTCAAGC
ACTGGGAGAT TGAGTCTCAA ACCCCCCTCC CACAAACTAC AAATAACACG TGTGTGCTCT
GGGACTGAAT TGTGCTCTGG TGCGGATCAT CCTCCGAAAA CGTCTTCTCA ATCAGGGTTT
GCCCCAAAGC TACCCCAAGA AAACCCAGGG CCCCTGTGAG GTGCTTTGCG GGAATGGACT
TGATTAAGAT CATGAAAAAA TTTCTCTTGA AACTTTAAAA ACCCACGAAA CTCCTCTATC
ACCTCCTGAA AAAACCTCAT TAATATTTCA GCCCGAACCC CCCCAATGTT AACCTTTTTA
ACTAAATTTA CATCCGTAAA CCCCGTGTTA CCCTTTTTGC GGGATTCCCC TTTCAACCTT
TTATACCCNC AAGCTTTAAA AATCCCGTTT
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
HLA-DRA | major histocompatibility complex, class II, DR alpha | 155 | 5e-38 | O | ||
HLA-DPA1 | major histocompatibility complex, class II, DP alpha 1 | 116 | 3e-26 | O | ||
HLA-DOA | major histocompatibility complex, class II, DO alpha | 109 | 3e-24 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 105 | 6e-23 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 105 | 6e-23 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 105 | 6e-23 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 105 | 6e-23 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 104 | 1e-22 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 88.2 | 6e-22 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 88.2 | 6e-22 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Ea | histocompatibility 2, class II antigen E alpha | 143 | 1e-34 | O | ||
H2-Oa | histocompatibility 2, O region alpha locus | 105 | 5e-23 | O | ||
H2-Aa | histocompatibility 2, class II antigen A, alpha | 90.9 | 2e-18 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
DLA-DRA1 | MHC class II DR alpha chain | 158 | 7e-39 | O | ||
dqa1 | MHC class II DLA DQalpha chain | 100 | 2e-21 | O | ||
LOC474869 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 99.8 | 3e-21 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BOLA-DRA | major histocompatibility complex, class II, DR alpha | 147 | 1e-35 | O | ||
LOC525727 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 109 | 2e-24 | O | ||
LOC525727 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 104 | 8e-23 | O | ||
BOLA-DQA1 | histocompatibility complex, class II, DQ alpha, type 1 | 104 | 1e-22 | O | ||
BOLA-DQA | major histocompatibility complex, class II, DQ alpha | 99 | 4e-21 | O | ||
BOLA-DYA | major histocompatibility complex, class II, DY alpha | 96.7 | 2e-20 | O | ||
BOLA-DQA2 | major histocompatibility complex, class II, DQ alpha 1 | 95.1 | 6e-20 | O |
Locus | Definition | Score | E value | FL |
---|
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