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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-004057

Length: 1,000

Sequence [FASTA format sequence]
NAAAAGCGAA TCTAAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X
CTCTCGCTG CGCTTCAGCA
GCCGCAGCTG CCTCTAGGCA AGATGATTGG GGTCCTGCTC CTGCTCCTTC TTCTCCCTTT
GCTCCTGTAC ATCGCTGTAC CCCAAATCAG GAAAATGCTG TCCAGCGGGG TGTGTACATC
AACCGTCCAG CTTCCTGGGA AGGTCGCTGT GGTCACTGGA GCCAACACAG GCATTGGGAA
GGAGACGGCC AAAGAGCTGG CTAAAAGAGG AGCCCGTGTA TATTTAGCCT GCCGGGATGT
GCAAAAGGGG GAATCGGTAG CCAGAGAAAT CCAGAACATG ACAGGAAACC AACAGGTATT
GGTGCGGAAA CTGGACCTGG CTGATACTAA ATCTATTCGA GCTTTTGCTA AGGGCTTCTT
AGCAGAAGAA AAGCATCTCC ACATTTTGAT CAACAATGCA GGAGTGATGA TGTGTCCTTA
CTCCAAGACA GCAGACGGCT TTGAGACGCA CATGGGAGTC AACCACTTAG GTCACTTCCT
CCTGACCCAT CTGTTACTAG AGAAGCTGAA GGAATCAGCC CCATCAAGGG TAGTGAATGT
GTCTTCCTTA GCACATCACA TGGGAAGGAT CCACTTCCAT AACCTGCAGG GCTCTGGCGT
TACAACATAC TCAGTACACC CTGGCACAGT TGACTCTGAA TTGGTTCGGC ACTCATCCCT
CCTGAGATGG ATTTGGTGGC TTTTCTCCTT CTTCATNCAG ACCCCTCAGC AGGGAGCCCA
GACCAGCCTG TACTGTGCCT TANCAGAAGG TCTTGAGGTT CTAAGTGGGA AACATTTCAG
TGACTGCCAT GTGGCATGGG TCTCTGCCCA GGCTCGTAAC GAGACAGTAG CAAGGCGGCT
ATGGGATGTC AGCTGTGACC TGCTGGGCAT CCCCTATGGA TGACGGGTGA TGGCATTTGG
ACCAAAAAAA CCTGCACCAA CTATTCATAC TCCCGCCCAA AAGATTCCCT TTCGAAGGGC
CAAACTTTAG CCAAAAACGC AAACCTCCAC CCTTGCGGTT GAAGTTGAAA AAACCCCTGT
TAACTGCGAA CCCCTAAACC CTTGGATTGC AAAATTATTT GTCCATACT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)453e-127O
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)361e-100O
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)1787e-45O
Contig/Assembly ProteinMGC23280hypothetical protein MGC232801702e-42O
Contig/Assembly ProteinRDH13retinol dehydrogenase 13 (all-trans/9-cis)1454e-35O
Contig/Assembly ProteinWWOXWW domain containing oxidoreductase1388e-33
Contig/Assembly ProteinDHRSXdehydrogenase/reductase (SDR family) X-linked1371e-32O
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 191.31e-18
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 191.31e-18
Contig/Assembly ProteinDHRS7dehydrogenase/reductase (SDR family) member 760.52e-09O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRdh11retinol dehydrogenase 11416e-116O
Contig/Assembly ProteinRdh12retinol dehydrogenase 123456e-95O
Contig/Assembly ProteinRdh13retinol dehydrogenase 13 (all-trans and 9-cis)2124e-55O
Contig/Assembly ProteinRdh14retinol dehydrogenase 14 (all-trans and 9-cis)1771e-44O
Contig/Assembly ProteinDhrsxdehydrogenase/reductase (SDR family) X chromosome1425e-34O
Contig/Assembly ProteinWwoxWW domain-containing oxidoreductase1388e-33
Contig/Assembly Protein2610209N15RikRIKEN cDNA 2610209N15 gene1381e-32O
Contig/Assembly ProteinDhrs7dehydrogenase/reductase (SDR family) member 765.11e-10O
Contig/Assembly ProteinDhrs7bdehydrogenase/reductase (SDR family) member 7B58.51e-08O
Contig/Assembly ProteinHpgdhydroxyprostaglandin dehydrogenase 15 (NAD)55.11e-07O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC480366similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)433e-121
Contig/Assembly ProteinLOC490744similar to retinol dehydrogenase 12 (all-trans and 9-cis)3562e-98O
Contig/Assembly ProteinLOC611373similar to Retinol dehydrogenase 132086e-54O
Contig/Assembly ProteinLOC491173similar to retinol dehydrogenase 11 (predicted)1962e-50O
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)1771e-44O
Contig/Assembly ProteinLOC475790similar to Retinol dehydrogenase 121587e-39
Contig/Assembly ProteinLOC609792similar to dehydrogenase/reductase (SDR family) X-linked1402e-33
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)1232e-28O
Contig/Assembly ProteinLOC610120similar to WW domain-containing oxidoreductase isoform 11059e-23
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)62.85e-10O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC505995similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)389e-108O
Contig/Assembly ProteinLOC505995similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)383e-106O
Contig/Assembly ProteinDSSDR2double substrate-specificity short chain dehydrogenase/reductase 23547e-98O
Contig/Assembly ProteinMGC139505similar to retinol dehydrogenase 11 (predicted)2024e-52O
Contig/Assembly ProteinMGC139076similar to retinol dehydrogenase 14 (all-trans and 9-cis)1787e-45
Contig/Assembly ProteinLOC507942similar to retinol dehydrogenase 11 (predicted)1571e-38O
Contig/Assembly ProteinLOC507931similar to Retinol dehydrogenase 131432e-34O
Contig/Assembly ProteinLOC513482similar to dehydrogenase/reductase (SDR family) X-linked1056e-23O
Contig/Assembly ProteinLOC507276similar to short chain dehydrogenase/reductase99.44e-21O
Contig/Assembly ProteinMGC140618similar to retinol dehydrogenase 13 (all-trans and 9-cis)80.52e-15O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR120-beta-hydroxysteroid dehydrogenase53.11e-08O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
AMP010024D01AMP01_0024_D01.bBW956783